ISMARA results for ENCODE cell lines, H3K27me3 (Ernst 2011)

All motifs sorted by activity significance

Motif name	Z-value	Associated genes	Profile	Logo
RREB1.p2	6.538	RREB1 (HNT)
NRF1.p2	6.351	NRF1 (EWG, ALPHA-PAL)
ELK1,4_GABP{A,B1}.p3	5.123	GABPA (E4TF1A, NFT2, NRF2, E4TF1-60, NRF2A) GABPB1 (E4TF1-47, GABPB) ELK4 (SAP1) ELK1
ZNF143.p2	4.763	ZNF143 (SBF, pHZ-1, STAF)
HIC1.p2	4.747	HIC1 (ZBTB29)
PITX1..3.p2	4.734	PITX2 (IGDS, RS, Brx1, Otlx2, ARP1) PITX3 PITX1 (PTX1, POTX)
SNAI1..3.p2	4.462	SNAI2 (SLUGH1) SNAI1 (SNA, SLUGH2, SNAH) SNAI3 (SMUC, Zfp293)
YY1.p2	4.205	YY1 (NF-E1, DELTA, UCRBP, YIN-YANG-1, INO80S)
TFCP2.p2	3.943	TFCP2 (CP2, LSF, LBP-1C, TFCP2C)
REST.p3	3.794	REST (NRSF, XBR)
TFAP2{A,C}.p2	3.601	TFAP2C (AP2-GAMMA, ERF1, TFAP2G, hAP-2g) TFAP2A (AP-2)
EHF.p2	3.404	EHF
HMGA1,2.p2	3.385	HMGA1 HMGA2 (BABL, LIPO)
FOS_FOS{B,L1}_JUN{B,D}.p2	3.358	FOS (c-fos, AP-1) JUNB FOSL1 (fra-1) JUND (AP-1) FOSB (G0S3, GOSB, GOS3, AP-1, MGC42291, DKFZp686C0818)
MZF1.p2	3.317	MZF1 (MZF1B, ZSCAN6, MZF-1, Zfp98)
TFAP2B.p2	3.311	TFAP2B (AP2-B)
MTF1.p2	3.294	MTF1
ZEB1.p2	3.290	ZEB1 (BZP, ZEB, AREB6, NIL-2-A, Zfhep, Zfhx1a)
AHR_ARNT_ARNT2.p2	3.231	ARNT (HIF-1beta, bHLHe2) AHR ARNT2 (KIAA0307, bHLHe1)
HOX{A6,A7,B6,B7}.p2	3.121	HOXB6 HOXA7 HOXB7 HOXA6
KLF12.p2	3.102	KLF12 (AP-2rep, HSPC122, AP2REP)
EBF1.p2	2.992	EBF1 (OLF1)
PAX5.p2	2.958	PAX5 (BSAP)
MAZ.p2	2.923	MAZ (ZF87, Pur-1, Zif87, ZNF801)
ZIC1..3.p2	2.829	ZIC1 (ZIC, ZNF201) ZIC2 (HPE5) ZIC3 (HTX, ZNF203)
MYFfamily.p2	2.794	MYOD1 (PUM, MYOD, bHLHc1) MYF6 (MRF4, bHLHc4) MYF5 (bHLHc2) MYOG (bHLHc3)
PRRX1,2.p2	2.761	PRRX2 (PRX2, PMX2) PRRX1 (PHOX1)
ELF1,2,4.p2	2.658	ELF2 (EU32, NERF, NERF-2, NERF-1A, NERF-1B) ELF1 ELF4 (MEF, ELFR)
NFY{A,B,C}.p2	2.639	NFYC (CBF-C) NFYB (CBF-A, HAP3) NFYA (HAP2, CBF-B)
TFDP1.p2	2.634	TFDP1 (Dp-1, DRTF1, DP1)
ZNF384.p2	2.620	ZNF384 (CAGH1A, CIZ, NMP4, NP)
SP1.p2	2.575	SP1
TEAD1.p2	2.544	TEAD1 (TEF-1) TEAD2 (ETF, TEF4, TEF-4, TEAD-2) TEAD3 (TEF5, TEAD5, TEF-5, DTEF-1, ETFR-1, TEAD-3) TEAD4 (TEF3, RTEF1, TEF-3, EFTR-2, TEFR-1, TCF13L1, hRTEF-1B)
CREB1.p2	2.509	CREB1
SMAD1..7,9.p2	2.502	SMAD5 (Dwfc, JV5-1) SMAD1 (MADR1, JV4-1) SMAD3 (JV15-2, HsT17436) SMAD4 (DPC4) SMAD2 (MADR2, JV18-1) SMAD6 (HsT17432) SMAD7 SMAD9
HNF4A_NR2F1,2.p2	2.496	NR2F1 (EAR-3, COUP-TFI, TCFCOUP1, SVP44) NR2F2 (COUP-TFII, COUPTFB, SVP40) HNF4A (NR2A1, HNF4)
ZNF423.p2	2.474	ZNF423 (KIAA0760, OAZ, Roaz, Ebfaz, Zfp104)
NFE2L1.p2	2.459	NFE2L1 (NRF1, LCR-F1, FLJ00380, TCF11)
GATA1..3.p2	2.458	GATA1 (ERYF1, NFE1) GATA2 (NFE1B) GATA3 (HDR)
CRX.p2	2.447	CRX (CRD, LCA7, OTX3)
IRF1,2,7.p3	2.439	IRF1 (MAR, IRF-1) IRF2 (IRF-2, DKFZp686F0244) IRF7 (IRF7A, IRF-7H)
HMX1.p2	2.404	HMX1 (H6, NKX5-3)
MYOD1.p2	2.394	MYOD1 (PUM, MYOD, bHLHc1)
GTF2I.p2	2.382	GTF2I (TFII-I, BAP-135, SPIN, BTKAP1, DIWS, IB291)
NHLH1,2.p2	2.342	NHLH1 (NSCL, NSCL1, bHLHa35) NHLH2 (NSCL2, bHLHa34)
KLF4.p3	2.289	KLF4 (EZF, GKLF)
MAFB.p2	2.268	MAFB
TLX1..3_NFIC{dimer}.p2	2.254	TLX1 TLX3 (RNX)
ATF5_CREB3.p2	2.248	ATF5 CREB3 (LZIP, Luman)
EP300.p2	2.213	EP300 (p300, KAT3B)
IKZF2.p2	2.204	IKZF2 (Helios)
BPTF.p2	2.202	BPTF (FAC1, NURF301)
EN1,2.p2	2.181	EN1 EN2
EGR1..3.p2	2.168	EGR3 (PILOT) EGR1 (TIS8, G0S30, NGFI-A, KROX-24, ZIF-268, AT225, ZNF225) EGR2
HBP1_HMGB_SSRP1_UBTF.p2	2.147	HMGB2 HMGB3 (HMG2A, MGC90319) SSRP1 (FACT80) UBTF (UBF, NOR-90) HBP1
RUNX1..3.p2	2.143	RUNX1 (PEBP2A2, AMLCR1) RUNX3 (AML2, PEBP2A3) RUNX2 (AML3, PEBP2A1, PEBP2aA1)
FOX{D1,D2}.p2	2.126	FOXD2 (FREAC9) FOXD1 (FREAC4)
TCF4_dimer.p2	2.112	TCF4 (E2-2, ITF2, PTHS, SEF2, SEF2-1, SEF2-1A, SEF2-1B, bHLHb19, MGC149723, MGC149724)
ETS1,2.p2	2.111	ETS2 ETS1 (FLJ10768, ETS-1)
ESR1.p2	2.066	ESR1 (NR3A1, Era)
SPI1.p2	2.061	SPI1 (PU.1, SPI-A, OF, SFPI1, SPI-1)
HLF.p2	2.039	HLF (MGC33822)
bHLH_family.p2	2.035	ARNTL (MOP3, JAP3, BMAL1, PASD3, bHLHe5) MITF (WS2A, MI, bHLHe32) MXI1 (MXD2, MAD2, MXI, bHLHc11) TFE3 (TFEA, bHLHe33) CLOCK (KIAA0334, KAT13D, bHLHe8) OLIG2 (RACK17, OLIGO2, bHLHe19) MXD4 (MAD4, MSTP149, MST149, bHLHc12) HEY2 (bHLHb32) HEY1 (HESR-1, CHF2, HESR1, HRT-1, CHF-2, HERP2, BHLHb31) HEYL (bHLHb33) MLXIPL (WS-bHLH, MIO, CHREBP, MONDOB) HES6 (bHLHc23) MXD3 (MAD3, bHLHc13) ARNTL2 (BMAL2, MOP9, CLIF, PASD9, bHLHe6) ID1 (dJ857M17.1.2, bHLHb24) MNT (ROX, MXD6, MAD6, bHLHd3) OLIG1 (BHLHB6, bHLHe21) NPAS2 (MOP4, PASD4, bHLHe9)
NFATC1..3.p2	2.034	NFATC3 (NFAT4, NFATX) NFATC2 (NF-ATP, NFATp, NFAT1) NFATC1 (NF-ATC, NFATc, NFAT2)
TFAP4.p2	2.031	TFAP4 (AP-4)
DBP.p2	1.967	DBP (DABP)
E2F1..5.p2	1.931	E2F4 (E2F-4) E2F5 E2F2 (E2F-2) E2F1 (RBP3) E2F3
NR5A1,2.p2	1.926	NR5A1 (FTZ1, SF-1, ELP, AD4BP) NR5A2 (FTZ-F1beta, hB1F, LRH-1, FTZ-F1, hB1F-2, B1F2)
RXR{A,B,G}.p2	1.890	RXRA (NR2B1) RXRB (NR2B2, H-2RIIBP, RCoR-1) RXRG (NR2B3)
ZFP161.p2	1.879	ZFP161 (ZNF478, ZBTB14)
MYB.p2	1.866	MYB (c-myb)
ZBTB16.p2	1.859	ZBTB16 (PLZF)
PAX2.p2	1.853	PAX2
SRY.p2	1.845	SRY (TDF)
HAND1,2.p2	1.816	HAND1 (eHand, Thing1, Hxt, bHLHa27) HAND2 (dHand, Thing2, Hed, bHLHa26)
TBP.p2	1.782	TBP (TFIID)
STAT2,4,6.p2	1.772	STAT2 (STAT113) STAT4 STAT6 (D12S1644, IL-4-STAT)
EVI1.p2	1.755	EVI1 (MDS1-EVI1, PRDM3)
CDX1,2,4.p2	1.748	CDX1 CDX2 CDX4
ONECUT1,2.p2	1.727	ONECUT2 (OC-2) ONECUT1 (HNF-6)
ZNF148.p2	1.696	ZNF148 (BERF-1, ZBP-89, BFCOL1, HT-BETA, ZFP148, pHZ-52)
SOX5.p2	1.695	SOX5 (L-SOX5, MGC35153)
FOXL1.p2	1.677	FOXL1 (FREAC7, FKH6)
POU1F1.p2	1.669	POU1F1 (GHF-1)
SPZ1.p2	1.656	SPZ1 (NYD-TSP1, FLJ25709)
POU5F1.p2	1.640	POU5F1 (OCT3, Oct4, MGC22487)
SRF.p3	1.618	SRF (MCM1)
ATF2.p2	1.607	ATF2 (TREB7, CRE-BP1, HB16)
NKX3-2.p2	1.566	NKX3-2 (NKX3B, NKX3.2)
RFX1..5_RFXANK_RFXAP.p2	1.555	RFX1 (EF-C) RFXAP RFX5 RFXANK (BLS, RFX-B, ANKRA1, F14150_1, MGC138628) RFX4 RFX3 RFX2 (FLJ14226)
POU5F1_SOX2{dimer}.p2	1.537	POU5F1 (OCT3, Oct4, MGC22487) SOX2
ZBTB6.p2	1.531	ZBTB6 (ZID)
FOXN1.p2	1.526	FOXN1 (FKHL20)
CTCF.p2	1.510	CTCF
NR3C1.p2	1.507	NR3C1 (GR)
ESRRA.p2	1.499	ESRRA (ERR1, ERRalpha, NR3B1, ERRa)
SPIB.p2	1.487	SPIB (SPI-B)
TBX4,5.p2	1.457	TBX5 TBX4
TGIF1.p2	1.448	TGIF1
FOXO1,3,4.p2	1.441	FOXO1 (FKH1) FOXO4 (AFX1) FOXO3 (AF6q21, FOXO2)
BACH2.p2	1.435	BACH2
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	1.425	ARNT (HIF-1beta, bHLHe2) MAX (bHLHd4) MYC (c-Myc, bHLHe39) USF1 (UEF, MLTFI, bHLHb11) BHLHB2 (DEC1, bHLHe40) ARNT2 (KIAA0307, bHLHe1)
GLI1..3.p2	1.422	GLI1 GLI2 (THP2, HPE9, THP1) GLI3 (PAP-A, PAPA, PAPA1, PAPB, ACLS, PPDIV)
SOX2.p2	1.406	SOX2
EOMES.p2	1.405	EOMES (TBR2)
FOXA2.p3	1.405	FOXA2
NFKB1_REL_RELA.p2	1.391	RELA (p65) REL (I-Rel) NFKB1 (KBF1, p105)
GATA6.p2	1.386	GATA6
TLX2.p2	1.385	TLX2 (Enx, Tlx2, NCX)
CEBPA,B_DDIT3.p2	1.373	DDIT3 (CHOP10, GADD153, CHOP) CEBPA (C/EBP-alpha) CEBPB (LAP, CRP2, NFIL6, IL6DBP)
HSF1,2.p2	1.364	HSF1 (HSTF1) HSF2
NR1H4.p2	1.334	NR1H4 (FXR, RIP14, HRR1, HRR-1)
ADNP_IRX_SIX_ZHX.p2	1.328	SIX5 ZHX1 IRX4 ADNP (KIAA0784, ADNP1) ZHX3 (KIAA0395) ZHX2 (KIAA0854) IRX5 (IRX-2a) SIX2
MEF2{A,B,C,D}.p2	1.327	MEF2A (RSRFC4, RSRFC9) MEF2C MEF2D MEF2BNB-MEF2B (MEF2B, LOC729991-MEF2B) MEF2B (RSRFR2, FLJ32648)
LMO2.p2	1.324	LMO2 (TTG2, RHOM2, RBTN2)
HOX{A4,D4}.p2	1.324	HOXA4 HOXD4
HIF1A.p2	1.317	HIF1A (MOP1, HIF-1alpha, PASD8, HIF1)
GTF2A1,2.p2	1.317	GTF2A1 (TFIIA) GTF2A2 (TFIIA, HsT18745)
NKX3-1.p2	1.305	NKX3-1 (NKX3.1, BAPX2)
NKX2-2,8.p2	1.303	NKX2-2 (NKX2.2) NKX2-8 (NKX2.8, Nkx2-9)
FOXD3.p2	1.286	FOXD3 (Genesis, HFH2)
GFI1.p2	1.278	GFI1
PAX4.p2	1.235	PAX4
POU3F1..4.p2	1.228	POU3F1 (OCT6, SCIP) POU3F3 (BRN1, OTF8) POU3F2 (POUF3, BRN2, OCT7) POU3F4 (BRN4, OTF9)
STAT5{A,B}.p2	1.223	STAT5B STAT5A (MGF)
EWSR1-FLI1.p2	1.215	FLI1 (EWSR2, SIC-1) EWSR1 (EWS, K984G1.4)
HOX{A5,B5}.p2	1.207	HOXB5 HOXA5
PRDM1.p3	1.202	PRDM1 (PRDI-BF1)
GFI1B.p2	1.197	GFI1B
MYBL2.p2	1.185	MYBL2 (BMYB, B-MYB)
NFE2L2.p2	1.185	NFE2L2 (NRF2)
PATZ1.p2	1.185	PATZ1 (MAZR, dJ400N23, ZBTB19, ZSG, RIAZ, PATZ)
ARID5B.p2	1.161	ARID5B (FLJ21150, MRF2)
CDC5L.p2	1.157	CDC5L (PCDC5RP, hCDC5, CEF1)
FOXP3.p2	1.148	FOXP3 (JM2, XPID, AIID, PIDX, DIETER, SCURFIN)
TP53.p2	1.116	TP53 (p53, LFS1)
HES1.p2	1.115	HES1 (FLJ20408, HES-1, Hes1, bHLHb39)
HNF1A.p2	1.111	HNF1A (HNF1, LFB1)
NFIL3.p2	1.102	NFIL3 (E4BP4, NFIL3A, NF-IL3A)
FOXQ1.p2	1.094	FOXQ1 (HFH1)
ATF4.p2	1.076	ATF4 (TAXREB67, CREB-2)
XBP1.p3	1.072	XBP1
SOX17.p2	1.072	SOX17
DMAP1_NCOR{1,2}_SMARC.p2	1.034	SMARCA1 (SNF2LB, NURF140, ISWI, SWI) SMARCC2 (BAF170, Rsc8, CRACC2) SMARCA5 (hSNF2H, hISWI, ISWI) NCOR1 (N-CoR, hCIT529I10, TRAC1, hN-CoR, KIAA1047, MGC104216) NCOR2 (SMRT, SMRTE, TRAC-1, CTG26, TNRC14) DMAP1 (DNMAP1, FLJ11543, KIAA1425, DNMTAP1, EAF2, SWC4)
LEF1_TCF7_TCF7L1,2.p2	1.033	TCF7 (TCF-1) TCF7L2 (TCF-4) LEF1 (TCF1ALPHA) TCF7L1
LHX3,4.p2	1.023	LHX3 LHX4 (Gsh4)
FOSL2.p2	1.007	FOSL2 (FRA2, FLJ23306)
IKZF1.p2	0.996	IKZF1 (hIk-1, LyF-1, Hs.54452, IKAROS)
RXRG_dimer.p3	0.991	NR1H2 (NER, NER-I, RIP15, LXR-b) RXRA (NR2B1) PPARG (PPARG1, PPARG2, NR1C3, PPARgamma) PPARA (hPPAR, NR1C1) RXRB (NR2B2, H-2RIIBP, RCoR-1) RXRG (NR2B3)
NANOG{mouse}.p2	0.991	NANOG (FLJ12581, FLJ40451)
NKX2-3_NKX2-5.p2	0.984	NKX2-5 (CSX1, NKX2.5, NKX4-1) NKX2-3 (NKX2.3, CSX3, NKX4-3)
NKX6-1,2.p2	0.982	NKX6-1 (Nkx6.1) NKX6-2 (NKX6B, GTX, NKX6.1)
ZNF238.p2	0.980	ZNF238 (C2H2-171, TAZ-1, RP58, ZBTB18)
JUN.p2	0.979	JUN (c-Jun, AP-1) JUND (AP-1) JUNB
PBX1.p2	0.965	PBX1
AIRE.p2	0.959	AIRE (PGA1, APS1)
POU6F1.p2	0.951	POU6F1 (BRN5, MPOU, TCFB1)
SOX{8,9,10}.p2	0.945	SOX9 (SRA1) SOX8 SOX10 (DOM, WS4, WS2E)
FOX{F1,F2,J1}.p2	0.932	FOXF2 (FREAC2) FOXJ1 (HFH-4, HFH4) FOXF1 (FREAC1)
NFIX.p2	0.924	NFIX (NF1A)
POU2F1..3.p2	0.921	POU2F2 (OCT2) POU2F1 (OCT1) POU2F3 (OCT11, PLA-1, Skn-1a, Epoc-1)
NFE2.p2	0.919	NFE2 (NF-E2)
FOX{I1,J2}.p2	0.916	FOXI1 (FREAC6) FOXJ2 (FHX)
FEV.p2	0.891	FEV (PET-1, HSRNAFEV)
NANOG.p2	0.890	NANOG (FLJ12581, FLJ40451)
ALX1.p2	0.884	ALX1
AR.p2	0.879	AR (AIS, NR3C4, SMAX1, HUMARA)
SREBF1,2.p2	0.866	SREBF1 (SREBP1, bHLHd1) SREBF2 (SREBP2, bHLHd2)
RXRA_VDR{dimer}.p2	0.850	VDR (NR1I1)
TAL1_TCF{3,4,12}.p2	0.849	TCF3 (E2A, ITF1, MGC129647, MGC129648, bHLHb21) TCF4 (SEF2-1B, ITF2, bHLHb19) TAL1 (SCL, bHLHa17) TCF12 (HEB, HTF4, HsT17266, bHLHb20)
ATF6.p2	0.842	ATF6 (ATF6A)
NKX2-1,4.p2	0.796	NKX2-1 (TTF-1) NKX2-4 (NKX2.4)
PPARG.p2	0.796	PPARG (PPARG1, PPARG2, NR1C3, PPARgamma)
TFEB.p2	0.748	TFEB
FOX{C1,C2}.p2	0.725	FOXC1 (FREAC3, ARA, IGDA, IHG1) FOXC2 (MFH-1)
T.p2	0.711	T
MSX1,2.p2	0.625	MSX1 (HYD1, OFC5) MSX2 (CRS2, FPP, HOX8, MSH, PFM)
RBPJ.p2	0.615	RBPJ (SUH, IGKJRB, RBPJK, KBF2, RBP-J, CBF1)
NR6A1.p2	0.580	NR6A1 (GCNF1, RTR)
HOXA9_MEIS1.p2	0.575	MEIS1 HOXA9
STAT1,3.p3	0.559	STAT1 (STAT91, ISGF-3) STAT3 (APRF)
PDX1.p2	0.548	PDX1 (IDX-1, STF-1, PDX-1, MODY4)
CUX2.p2	0.535	CUX2 (KIAA0293, CDP2)
RORA.p2	0.529	RORA (RZRA, ROR1, ROR2, ROR3, NR1F1)
PAX6.p2	0.498	PAX6 (D11S812E, AN, WAGR)
VSX1,2.p2	0.351	VSX2 (RET1) VSX1 (PPD)
GZF1.p2	0.232	GZF1 (dJ322G13.2, ZBTB23)
PAX3,7.p2	0.155	PAX7 (Hup1) PAX3 (HUP2)
PAX8.p2	0.115	PAX8

All samples sorted alphabetically

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