PRJNA207719: Tissue specific transcriptome profiling
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
| Motif name | Z-value | Associated genes | Profile | Logo |
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| rest | 8.36 |
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| hoxb6a+hoxb6b | 7.50 |
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| maza+mazb | 6.23 |
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| arnt2 | 5.62 |
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| zbtb14 | 5.04 |
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| hnf1a | 4.92 |
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| zeb1a+zeb1b | 4.85 |
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| hnf1ba+hnf1bb | 4.85 |
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| irf1b+irf2+irf2a | 4.82 |
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| yy1a+yy1b | 4.70 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.