ISMARA results for ENCODE cell lines, H3K27me3 (Ernst 2011)

ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.

All motifs sorted by activity significance

Motif name Z-value Associated genes Profile Logo
SNAI1..3.p2 5.233 SNAI2 (SLUGH1)
SNAI1 (SNA, SLUGH2, SNAH)
SNAI3 (SMUC, Zfp293)
REST.p3 4.882 REST (NRSF, XBR)
FOS_FOS{B,L1}_JUN{B,D}.p2 4.621 FOS (c-fos, AP-1)
JUNB
FOSL1 (fra-1)
JUND (AP-1)
FOSB (G0S3, GOSB, GOS3, AP-1, MGC42291, DKFZp686C0818)
HIC1.p2 4.194 HIC1 (ZBTB29)
PITX1..3.p2 4.033 PITX2 (IGDS, RS, Brx1, Otlx2, ARP1)
PITX3
PITX1 (PTX1, POTX)
TFCP2.p2 3.985 TFCP2 (CP2, LSF, LBP-1C, TFCP2C)
NRF1.p2 3.840 NRF1 (EWG, ALPHA-PAL)
YY1.p2 3.775 YY1 (NF-E1, DELTA, UCRBP, YIN-YANG-1, INO80S)
ELK1,4_GABP{A,B1}.p3 3.660 GABPA (E4TF1A, NFT2, NRF2, E4TF1-60, NRF2A)
GABPB1 (E4TF1-47, GABPB)
ELK4 (SAP1)
ELK1
ZEB1.p2 3.620 ZEB1 (BZP, ZEB, AREB6, NIL-2-A, Zfhep, Zfhx1a)
TEAD1.p2 3.547 TEAD1 (TEF-1)
TEAD2 (ETF, TEF4, TEF-4, TEAD-2)
TEAD3 (TEF5, TEAD5, TEF-5, DTEF-1, ETFR-1, TEAD-3)
TEAD4 (TEF3, RTEF1, TEF-3, EFTR-2, TEFR-1, TCF13L1, hRTEF-1B)
TFAP2{A,C}.p2 3.492 TFAP2C (AP2-GAMMA, ERF1, TFAP2G, hAP-2g)
TFAP2A (AP-2)
MZF1.p2 3.306 MZF1 (MZF1B, ZSCAN6, MZF-1, Zfp98)
MAZ.p2 3.224 MAZ (ZF87, Pur-1, Zif87, ZNF801)
HMX1.p2 3.131 HMX1 (H6, NKX5-3)
RREB1.p2 3.098 RREB1 (HNT)
MYOD1.p2 3.037 MYOD1 (PUM, MYOD, bHLHc1)
GTF2I.p2 3.001 GTF2I (TFII-I, BAP-135, SPIN, BTKAP1, DIWS, IB291)
MTF1.p2 2.978 MTF1
ZNF423.p2 2.958 ZNF423 (KIAA0760, OAZ, Roaz, Ebfaz, Zfp104)
NFE2L1.p2 2.922 NFE2L1 (NRF1, LCR-F1, FLJ00380, TCF11)
FOX{D1,D2}.p2 2.908 FOXD2 (FREAC9)
FOXD1 (FREAC4)
ZIC1..3.p2 2.901 ZIC1 (ZIC, ZNF201)
ZIC2 (HPE5)
ZIC3 (HTX, ZNF203)
MYFfamily.p2 2.870 MYOD1 (PUM, MYOD, bHLHc1)
MYF6 (MRF4, bHLHc4)
MYF5 (bHLHc2)
MYOG (bHLHc3)
ZNF143.p2 2.846 ZNF143 (SBF, pHZ-1, STAF)
AHR_ARNT_ARNT2.p2 2.803 ARNT (HIF-1beta, bHLHe2)
AHR
ARNT2 (KIAA0307, bHLHe1)
GATA1..3.p2 2.726 GATA1 (ERYF1, NFE1)
GATA2 (NFE1B)
GATA3 (HDR)
HOX{A6,A7,B6,B7}.p2 2.724 HOXB6
HOXA7
HOXB7
HOXA6
HLF.p2 2.622 HLF (MGC33822)
ATF5_CREB3.p2 2.621 ATF5
CREB3 (LZIP, Luman)
KLF12.p2 2.576 KLF12 (AP-2rep, HSPC122, AP2REP)
NHLH1,2.p2 2.560 NHLH1 (NSCL, NSCL1, bHLHa35)
NHLH2 (NSCL2, bHLHa34)
EHF.p2 2.519 EHF
EBF1.p2 2.510 EBF1 (OLF1)
bHLH_family.p2 2.468 ARNTL (MOP3, JAP3, BMAL1, PASD3, bHLHe5)
MITF (WS2A, MI, bHLHe32)
MXI1 (MXD2, MAD2, MXI, bHLHc11)
TFE3 (TFEA, bHLHe33)
CLOCK (KIAA0334, KAT13D, bHLHe8)
OLIG2 (RACK17, OLIGO2, bHLHe19)
MXD4 (MAD4, MSTP149, MST149, bHLHc12)
HEY2 (bHLHb32)
HEY1 (HESR-1, CHF2, HESR1, HRT-1, CHF-2, HERP2, BHLHb31)
HEYL (bHLHb33)
MLXIPL (WS-bHLH, MIO, CHREBP, MONDOB)
HES6 (bHLHc23)
MXD3 (MAD3, bHLHc13)
ARNTL2 (BMAL2, MOP9, CLIF, PASD9, bHLHe6)
ID1 (dJ857M17.1.2, bHLHb24)
MNT (ROX, MXD6, MAD6, bHLHd3)
OLIG1 (BHLHB6, bHLHe21)
NPAS2 (MOP4, PASD4, bHLHe9)
ONECUT1,2.p2 2.350 ONECUT2 (OC-2)
ONECUT1 (HNF-6)
CRX.p2 2.229 CRX (CRD, LCA7, OTX3)
EN1,2.p2 2.224 EN1
EN2
RXR{A,B,G}.p2 2.211 RXRA (NR2B1)
RXRB (NR2B2, H-2RIIBP, RCoR-1)
RXRG (NR2B3)
MAFB.p2 2.208 MAFB
SMAD1..7,9.p2 2.208 SMAD5 (Dwfc, JV5-1)
SMAD1 (MADR1, JV4-1)
SMAD3 (JV15-2, HsT17436)
SMAD4 (DPC4)
SMAD2 (MADR2, JV18-1)
SMAD6 (HsT17432)
SMAD7
SMAD9
TFDP1.p2 2.193 TFDP1 (Dp-1, DRTF1, DP1)
SP1.p2 2.190 SP1
HBP1_HMGB_SSRP1_UBTF.p2 2.180 HMGB2
HMGB3 (HMG2A, MGC90319)
SSRP1 (FACT80)
UBTF (UBF, NOR-90)
HBP1
SPI1.p2 2.179 SPI1 (PU.1, SPI-A, OF, SFPI1, SPI-1)
MYB.p2 2.127 MYB (c-myb)
E2F1..5.p2 2.120 E2F4 (E2F-4)
E2F5
E2F2 (E2F-2)
E2F1 (RBP3)
E2F3
CREB1.p2 2.080 CREB1
ETS1,2.p2 2.029 ETS2
ETS1 (FLJ10768, ETS-1)
ZFP161.p2 2.013 ZFP161 (ZNF478, ZBTB14)
ESR1.p2 2.009 ESR1 (NR3A1, Era)
EGR1..3.p2 2.002 EGR3 (PILOT)
EGR1 (TIS8, G0S30, NGFI-A, KROX-24, ZIF-268, AT225, ZNF225)
EGR2
ATF2.p2 2.001 ATF2 (TREB7, CRE-BP1, HB16)
HMGA1,2.p2 1.987 HMGA1
HMGA2 (BABL, LIPO)
SRF.p3 1.987 SRF (MCM1)
RUNX1..3.p2 1.978 RUNX1 (PEBP2A2, AMLCR1)
RUNX3 (AML2, PEBP2A3)
RUNX2 (AML3, PEBP2A1, PEBP2aA1)
BACH2.p2 1.970 BACH2
IRF1,2,7.p3 1.960 IRF1 (MAR, IRF-1)
IRF2 (IRF-2, DKFZp686F0244)
IRF7 (IRF7A, IRF-7H)
RFX1..5_RFXANK_RFXAP.p2 1.949 RFX1 (EF-C)
RFXAP
RFX5
RFXANK (BLS, RFX-B, ANKRA1, F14150_1, MGC138628)
RFX4
RFX3
RFX2 (FLJ14226)
SOX5.p2 1.944 SOX5 (L-SOX5, MGC35153)
TLX1..3_NFIC{dimer}.p2 1.941 TLX1
TLX3 (RNX)
KLF4.p3 1.918 KLF4 (EZF, GKLF)
STAT2,4,6.p2 1.894 STAT2 (STAT113)
STAT4
STAT6 (D12S1644, IL-4-STAT)
BPTF.p2 1.890 BPTF (FAC1, NURF301)
TBX4,5.p2 1.889 TBX5
TBX4
NKX3-2.p2 1.857 NKX3-2 (NKX3B, NKX3.2)
ELF1,2,4.p2 1.845 ELF2 (EU32, NERF, NERF-2, NERF-1A, NERF-1B)
ELF1
ELF4 (MEF, ELFR)
CEBPA,B_DDIT3.p2 1.835 DDIT3 (CHOP10, GADD153, CHOP)
CEBPA (C/EBP-alpha)
CEBPB (LAP, CRP2, NFIL6, IL6DBP)
NFY{A,B,C}.p2 1.833 NFYC (CBF-C)
NFYB (CBF-A, HAP3)
NFYA (HAP2, CBF-B)
FOXL1.p2 1.796 FOXL1 (FREAC7, FKH6)
POU5F1.p2 1.782 POU5F1 (OCT3, Oct4, MGC22487)
PAX2.p2 1.774 PAX2
TFAP2B.p2 1.768 TFAP2B (AP2-B)
ZBTB6.p2 1.766 ZBTB6 (ZID)
CDX1,2,4.p2 1.764 CDX1
CDX2
CDX4
CTCF.p2 1.735 CTCF
NR5A1,2.p2 1.734 NR5A1 (FTZ1, SF-1, ELP, AD4BP)
NR5A2 (FTZ-F1beta, hB1F, LRH-1, FTZ-F1, hB1F-2, B1F2)
TBP.p2 1.674 TBP (TFIID)
SPZ1.p2 1.673 SPZ1 (NYD-TSP1, FLJ25709)
NR1H4.p2 1.663 NR1H4 (FXR, RIP14, HRR1, HRR-1)
LMO2.p2 1.646 LMO2 (TTG2, RHOM2, RBTN2)
HIF1A.p2 1.644 HIF1A (MOP1, HIF-1alpha, PASD8, HIF1)
TCF4_dimer.p2 1.642 TCF4 (E2-2, ITF2, PTHS, SEF2, SEF2-1, SEF2-1A, SEF2-1B, bHLHb19, MGC149723, MGC149724)
EP300.p2 1.632 EP300 (p300, KAT3B)
PAX5.p2 1.616 PAX5 (BSAP)
FOXN1.p2 1.608 FOXN1 (FKHL20)
ZBTB16.p2 1.594 ZBTB16 (PLZF)
ESRRA.p2 1.583 ESRRA (ERR1, ERRalpha, NR3B1, ERRa)
NFE2L2.p2 1.582 NFE2L2 (NRF2)
EWSR1-FLI1.p2 1.568 FLI1 (EWSR2, SIC-1)
EWSR1 (EWS, K984G1.4)
FOXD3.p2 1.564 FOXD3 (Genesis, HFH2)
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2 1.555 ARNT (HIF-1beta, bHLHe2)
MAX (bHLHd4)
MYC (c-Myc, bHLHe39)
USF1 (UEF, MLTFI, bHLHb11)
BHLHB2 (DEC1, bHLHe40)
ARNT2 (KIAA0307, bHLHe1)
TGIF1.p2 1.555 TGIF1
NR3C1.p2 1.538 NR3C1 (GR)
PRDM1.p3 1.514 PRDM1 (PRDI-BF1)
SPIB.p2 1.503 SPIB (SPI-B)
POU5F1_SOX2{dimer}.p2 1.495 POU5F1 (OCT3, Oct4, MGC22487)
SOX2
HAND1,2.p2 1.482 HAND1 (eHand, Thing1, Hxt, bHLHa27)
HAND2 (dHand, Thing2, Hed, bHLHa26)
GATA6.p2 1.479 GATA6
HNF4A_NR2F1,2.p2 1.460 NR2F1 (EAR-3, COUP-TFI, TCFCOUP1, SVP44)
NR2F2 (COUP-TFII, COUPTFB, SVP40)
HNF4A (NR2A1, HNF4)
HNF1A.p2 1.455 HNF1A (HNF1, LFB1)
TFAP4.p2 1.448 TFAP4 (AP-4)
PATZ1.p2 1.434 PATZ1 (MAZR, dJ400N23, ZBTB19, ZSG, RIAZ, PATZ)
GTF2A1,2.p2 1.432 GTF2A1 (TFIIA)
GTF2A2 (TFIIA, HsT18745)
GLI1..3.p2 1.424 GLI1
GLI2 (THP2, HPE9, THP1)
GLI3 (PAP-A, PAPA, PAPA1, PAPB, ACLS, PPDIV)
MYBL2.p2 1.423 MYBL2 (BMYB, B-MYB)
NFKB1_REL_RELA.p2 1.404 RELA (p65)
REL (I-Rel)
NFKB1 (KBF1, p105)
NFIL3.p2 1.385 NFIL3 (E4BP4, NFIL3A, NF-IL3A)
POU1F1.p2 1.381 POU1F1 (GHF-1)
GFI1B.p2 1.332 GFI1B
FOXO1,3,4.p2 1.323 FOXO1 (FKH1)
FOXO4 (AFX1)
FOXO3 (AF6q21, FOXO2)
NKX2-2,8.p2 1.315 NKX2-2 (NKX2.2)
NKX2-8 (NKX2.8, Nkx2-9)
RXRG_dimer.p3 1.310 NR1H2 (NER, NER-I, RIP15, LXR-b)
RXRA (NR2B1)
PPARG (PPARG1, PPARG2, NR1C3, PPARgamma)
PPARA (hPPAR, NR1C1)
RXRB (NR2B2, H-2RIIBP, RCoR-1)
RXRG (NR2B3)
HOX{A5,B5}.p2 1.303 HOXB5
HOXA5
LHX3,4.p2 1.279 LHX3
LHX4 (Gsh4)
FOXP3.p2 1.274 FOXP3 (JM2, XPID, AIID, PIDX, DIETER, SCURFIN)
ARID5B.p2 1.265 ARID5B (FLJ21150, MRF2)
TP53.p2 1.247 TP53 (p53, LFS1)
CDC5L.p2 1.229 CDC5L (PCDC5RP, hCDC5, CEF1)
SOX17.p2 1.222 SOX17
XBP1.p3 1.220 XBP1
GFI1.p2 1.210 GFI1
ZNF384.p2 1.203 ZNF384 (CAGH1A, CIZ, NMP4, NP)
PRRX1,2.p2 1.190 PRRX2 (PRX2, PMX2)
PRRX1 (PHOX1)
AR.p2 1.168 AR (AIS, NR3C4, SMAX1, HUMARA)
HOX{A4,D4}.p2 1.165 HOXA4
HOXD4
POU6F1.p2 1.154 POU6F1 (BRN5, MPOU, TCFB1)
NKX3-1.p2 1.121 NKX3-1 (NKX3.1, BAPX2)
EOMES.p2 1.117 EOMES (TBR2)
PBX1.p2 1.092 PBX1
AIRE.p2 1.088 AIRE (PGA1, APS1)
TLX2.p2 1.077 TLX2 (Enx, Tlx2, NCX)
IKZF1.p2 1.076 IKZF1 (hIk-1, LyF-1, Hs.54452, IKAROS)
EVI1.p2 1.071 EVI1 (MDS1-EVI1, PRDM3)
TAL1_TCF{3,4,12}.p2 1.068 TCF3 (E2A, ITF1, MGC129647, MGC129648, bHLHb21)
TCF4 (SEF2-1B, ITF2, bHLHb19)
TAL1 (SCL, bHLHa17)
TCF12 (HEB, HTF4, HsT17266, bHLHb20)
HSF1,2.p2 1.063 HSF1 (HSTF1)
HSF2
ZNF238.p2 1.062 ZNF238 (C2H2-171, TAZ-1, RP58, ZBTB18)
RXRA_VDR{dimer}.p2 1.041 VDR (NR1I1)
NANOG{mouse}.p2 1.038 NANOG (FLJ12581, FLJ40451)
IKZF2.p2 1.030 IKZF2 (Helios)
ALX1.p2 1.004 ALX1
NFATC1..3.p2 0.999 NFATC3 (NFAT4, NFATX)
NFATC2 (NF-ATP, NFATp, NFAT1)
NFATC1 (NF-ATC, NFATc, NFAT2)
NFE2.p2 0.997 NFE2 (NF-E2)
PAX4.p2 0.991 PAX4
SREBF1,2.p2 0.984 SREBF1 (SREBP1, bHLHd1)
SREBF2 (SREBP2, bHLHd2)
HES1.p2 0.977 HES1 (FLJ20408, HES-1, Hes1, bHLHb39)
LEF1_TCF7_TCF7L1,2.p2 0.963 TCF7 (TCF-1)
TCF7L2 (TCF-4)
LEF1 (TCF1ALPHA)
TCF7L1
ATF6.p2 0.962 ATF6 (ATF6A)
POU2F1..3.p2 0.962 POU2F2 (OCT2)
POU2F1 (OCT1)
POU2F3 (OCT11, PLA-1, Skn-1a, Epoc-1)
ATF4.p2 0.928 ATF4 (TAXREB67, CREB-2)
NKX6-1,2.p2 0.922 NKX6-1 (Nkx6.1)
NKX6-2 (NKX6B, GTX, NKX6.1)
STAT5{A,B}.p2 0.916 STAT5B
STAT5A (MGF)
FOX{F1,F2,J1}.p2 0.908 FOXF2 (FREAC2)
FOXJ1 (HFH-4, HFH4)
FOXF1 (FREAC1)
ZNF148.p2 0.908 ZNF148 (BERF-1, ZBP-89, BFCOL1, HT-BETA, ZFP148, pHZ-52)
NFIX.p2 0.907 NFIX (NF1A)
FOXA2.p3 0.907 FOXA2
JUN.p2 0.902 JUN (c-Jun, AP-1)
JUND (AP-1)
JUNB
ADNP_IRX_SIX_ZHX.p2 0.891 SIX5
ZHX1
IRX4
ADNP (KIAA0784, ADNP1)
ZHX3 (KIAA0395)
ZHX2 (KIAA0854)
IRX5 (IRX-2a)
SIX2
TFEB.p2 0.879 TFEB
NKX2-1,4.p2 0.878 NKX2-1 (TTF-1)
NKX2-4 (NKX2.4)
SOX2.p2 0.867 SOX2
POU3F1..4.p2 0.863 POU3F1 (OCT6, SCIP)
POU3F3 (BRN1, OTF8)
POU3F2 (POUF3, BRN2, OCT7)
POU3F4 (BRN4, OTF9)
SOX{8,9,10}.p2 0.834 SOX9 (SRA1)
SOX8
SOX10 (DOM, WS4, WS2E)
NANOG.p2 0.827 NANOG (FLJ12581, FLJ40451)
MEF2{A,B,C,D}.p2 0.823 MEF2A (RSRFC4, RSRFC9)
MEF2C
MEF2D
MEF2BNB-MEF2B (MEF2B, LOC729991-MEF2B)
MEF2B (RSRFR2, FLJ32648)
PPARG.p2 0.820 PPARG (PPARG1, PPARG2, NR1C3, PPARgamma)
NKX2-3_NKX2-5.p2 0.820 NKX2-5 (CSX1, NKX2.5, NKX4-1)
NKX2-3 (NKX2.3, CSX3, NKX4-3)
FOXQ1.p2 0.817 FOXQ1 (HFH1)
DBP.p2 0.803 DBP (DABP)
FEV.p2 0.799 FEV (PET-1, HSRNAFEV)
FOSL2.p2 0.793 FOSL2 (FRA2, FLJ23306)
FOX{I1,J2}.p2 0.780 FOXI1 (FREAC6)
FOXJ2 (FHX)
MSX1,2.p2 0.767 MSX1 (HYD1, OFC5)
MSX2 (CRS2, FPP, HOX8, MSH, PFM)
FOX{C1,C2}.p2 0.761 FOXC1 (FREAC3, ARA, IGDA, IHG1)
FOXC2 (MFH-1)
T.p2 0.701 T
PDX1.p2 0.681 PDX1 (IDX-1, STF-1, PDX-1, MODY4)
NR6A1.p2 0.670 NR6A1 (GCNF1, RTR)
RORA.p2 0.664 RORA (RZRA, ROR1, ROR2, ROR3, NR1F1)
RBPJ.p2 0.616 RBPJ (SUH, IGKJRB, RBPJK, KBF2, RBP-J, CBF1)
STAT1,3.p3 0.609 STAT1 (STAT91, ISGF-3)
STAT3 (APRF)
SRY.p2 0.587 SRY (TDF)
DMAP1_NCOR{1,2}_SMARC.p2 0.568 SMARCA1 (SNF2LB, NURF140, ISWI, SWI)
SMARCC2 (BAF170, Rsc8, CRACC2)
SMARCA5 (hSNF2H, hISWI, ISWI)
NCOR1 (N-CoR, hCIT529I10, TRAC1, hN-CoR, KIAA1047, MGC104216)
NCOR2 (SMRT, SMRTE, TRAC-1, CTG26, TNRC14)
DMAP1 (DNMAP1, FLJ11543, KIAA1425, DNMTAP1, EAF2, SWC4)
HOXA9_MEIS1.p2 0.561 MEIS1
HOXA9
CUX2.p2 0.556 CUX2 (KIAA0293, CDP2)
PAX6.p2 0.516 PAX6 (D11S812E, AN, WAGR)
VSX1,2.p2 0.366 VSX2 (RET1)
VSX1 (PPD)
GZF1.p2 0.280 GZF1 (dJ322G13.2, ZBTB23)
PAX3,7.p2 0.199 PAX7 (Hup1)
PAX3 (HUP2)
PAX8.p2 0.119 PAX8

All samples sorted alphabetically


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Sample name Condition Replicate/Batch
GM12878
HepG2
HMEC
HSMM
Huvec
K562
NHEK
NHLF