ISMARA results for ENCODE cell lines, H3K36me3 (Ernst 2011)

ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.

All motifs sorted by activity significance

Motif name Z-value Associated genes Profile Logo
NRF1.p2 6.403 NRF1 (EWG, ALPHA-PAL)
ELK1,4_GABP{A,B1}.p3 5.738 GABPA (E4TF1A, NFT2, NRF2, E4TF1-60, NRF2A)
GABPB1 (E4TF1-47, GABPB)
ELK4 (SAP1)
ELK1
YY1.p2 4.744 YY1 (NF-E1, DELTA, UCRBP, YIN-YANG-1, INO80S)
ZNF143.p2 4.381 ZNF143 (SBF, pHZ-1, STAF)
TFDP1.p2 4.143 TFDP1 (Dp-1, DRTF1, DP1)
E2F1..5.p2 4.138 E2F4 (E2F-4)
E2F5
E2F2 (E2F-2)
E2F1 (RBP3)
E2F3
NFY{A,B,C}.p2 4.029 NFYC (CBF-C)
NFYB (CBF-A, HAP3)
NFYA (HAP2, CBF-B)
EHF.p2 3.993 EHF
KLF12.p2 3.947 KLF12 (AP-2rep, HSPC122, AP2REP)
HIC1.p2 3.882 HIC1 (ZBTB29)
HNF4A_NR2F1,2.p2 3.865 NR2F1 (EAR-3, COUP-TFI, TCFCOUP1, SVP44)
NR2F2 (COUP-TFII, COUPTFB, SVP40)
HNF4A (NR2A1, HNF4)
TFCP2.p2 3.664 TFCP2 (CP2, LSF, LBP-1C, TFCP2C)
IRF1,2,7.p3 3.558 IRF1 (MAR, IRF-1)
IRF2 (IRF-2, DKFZp686F0244)
IRF7 (IRF7A, IRF-7H)
TBP.p2 3.494 TBP (TFIID)
MYB.p2 3.467 MYB (c-myb)
PITX1..3.p2 3.434 PITX2 (IGDS, RS, Brx1, Otlx2, ARP1)
PITX3
PITX1 (PTX1, POTX)
GTF2A1,2.p2 3.429 GTF2A1 (TFIIA)
GTF2A2 (TFIIA, HsT18745)
RREB1.p2 3.375 RREB1 (HNT)
TFAP2{A,C}.p2 3.367 TFAP2C (AP2-GAMMA, ERF1, TFAP2G, hAP-2g)
TFAP2A (AP-2)
TEAD1.p2 3.294 TEAD1 (TEF-1)
TEAD2 (ETF, TEF4, TEF-4, TEAD-2)
TEAD3 (TEF5, TEAD5, TEF-5, DTEF-1, ETFR-1, TEAD-3)
TEAD4 (TEF3, RTEF1, TEF-3, EFTR-2, TEFR-1, TCF13L1, hRTEF-1B)
HNF1A.p2 3.281 HNF1A (HNF1, LFB1)
MTF1.p2 3.259 MTF1
SNAI1..3.p2 3.198 SNAI2 (SLUGH1)
SNAI1 (SNA, SLUGH2, SNAH)
SNAI3 (SMUC, Zfp293)
GATA1..3.p2 3.150 GATA1 (ERYF1, NFE1)
GATA2 (NFE1B)
GATA3 (HDR)
SMAD1..7,9.p2 3.125 SMAD5 (Dwfc, JV5-1)
SMAD1 (MADR1, JV4-1)
SMAD3 (JV15-2, HsT17436)
SMAD4 (DPC4)
SMAD2 (MADR2, JV18-1)
SMAD6 (HsT17432)
SMAD7
SMAD9
PRRX1,2.p2 3.118 PRRX2 (PRX2, PMX2)
PRRX1 (PHOX1)
SPI1.p2 2.910 SPI1 (PU.1, SPI-A, OF, SFPI1, SPI-1)
SP1.p2 2.895 SP1
HOX{A6,A7,B6,B7}.p2 2.819 HOXB6
HOXA7
HOXB7
HOXA6
RXR{A,B,G}.p2 2.807 RXRA (NR2B1)
RXRB (NR2B2, H-2RIIBP, RCoR-1)
RXRG (NR2B3)
MZF1.p2 2.771 MZF1 (MZF1B, ZSCAN6, MZF-1, Zfp98)
MAFB.p2 2.762 MAFB
TCF4_dimer.p2 2.664 TCF4 (E2-2, ITF2, PTHS, SEF2, SEF2-1, SEF2-1A, SEF2-1B, bHLHb19, MGC149723, MGC149724)
RUNX1..3.p2 2.648 RUNX1 (PEBP2A2, AMLCR1)
RUNX3 (AML2, PEBP2A3)
RUNX2 (AML3, PEBP2A1, PEBP2aA1)
TLX1..3_NFIC{dimer}.p2 2.627 TLX1
TLX3 (RNX)
CREB1.p2 2.586 CREB1
FOS_FOS{B,L1}_JUN{B,D}.p2 2.544 FOS (c-fos, AP-1)
JUNB
FOSL1 (fra-1)
JUND (AP-1)
FOSB (G0S3, GOSB, GOS3, AP-1, MGC42291, DKFZp686C0818)
MYOD1.p2 2.521 MYOD1 (PUM, MYOD, bHLHc1)
KLF4.p3 2.358 KLF4 (EZF, GKLF)
ELF1,2,4.p2 2.355 ELF2 (EU32, NERF, NERF-2, NERF-1A, NERF-1B)
ELF1
ELF4 (MEF, ELFR)
NR5A1,2.p2 2.348 NR5A1 (FTZ1, SF-1, ELP, AD4BP)
NR5A2 (FTZ-F1beta, hB1F, LRH-1, FTZ-F1, hB1F-2, B1F2)
MYFfamily.p2 2.333 MYOD1 (PUM, MYOD, bHLHc1)
MYF6 (MRF4, bHLHc4)
MYF5 (bHLHc2)
MYOG (bHLHc3)
ZNF423.p2 2.313 ZNF423 (KIAA0760, OAZ, Roaz, Ebfaz, Zfp104)
FEV.p2 2.301 FEV (PET-1, HSRNAFEV)
SPIB.p2 2.297 SPIB (SPI-B)
REST.p3 2.245 REST (NRSF, XBR)
GATA6.p2 2.244 GATA6
RFX1..5_RFXANK_RFXAP.p2 2.199 RFX1 (EF-C)
RFXAP
RFX5
RFXANK (BLS, RFX-B, ANKRA1, F14150_1, MGC138628)
RFX4
RFX3
RFX2 (FLJ14226)
ATF5_CREB3.p2 2.174 ATF5
CREB3 (LZIP, Luman)
JUN.p2 2.173 JUN (c-Jun, AP-1)
JUND (AP-1)
JUNB
ETS1,2.p2 2.167 ETS2
ETS1 (FLJ10768, ETS-1)
HAND1,2.p2 2.100 HAND1 (eHand, Thing1, Hxt, bHLHa27)
HAND2 (dHand, Thing2, Hed, bHLHa26)
GLI1..3.p2 2.050 GLI1
GLI2 (THP2, HPE9, THP1)
GLI3 (PAP-A, PAPA, PAPA1, PAPB, ACLS, PPDIV)
EN1,2.p2 2.027 EN1
EN2
PAX5.p2 1.996 PAX5 (BSAP)
ZNF384.p2 1.988 ZNF384 (CAGH1A, CIZ, NMP4, NP)
POU2F1..3.p2 1.987 POU2F2 (OCT2)
POU2F1 (OCT1)
POU2F3 (OCT11, PLA-1, Skn-1a, Epoc-1)
ESR1.p2 1.975 ESR1 (NR3A1, Era)
MAZ.p2 1.956 MAZ (ZF87, Pur-1, Zif87, ZNF801)
PAX2.p2 1.921 PAX2
ZNF238.p2 1.908 ZNF238 (C2H2-171, TAZ-1, RP58, ZBTB18)
ZEB1.p2 1.831 ZEB1 (BZP, ZEB, AREB6, NIL-2-A, Zfhep, Zfhx1a)
TLX2.p2 1.804 TLX2 (Enx, Tlx2, NCX)
ZBTB16.p2 1.804 ZBTB16 (PLZF)
EP300.p2 1.802 EP300 (p300, KAT3B)
LMO2.p2 1.790 LMO2 (TTG2, RHOM2, RBTN2)
SRF.p3 1.788 SRF (MCM1)
EBF1.p2 1.759 EBF1 (OLF1)
NKX2-2,8.p2 1.757 NKX2-2 (NKX2.2)
NKX2-8 (NKX2.8, Nkx2-9)
bHLH_family.p2 1.751 ARNTL (MOP3, JAP3, BMAL1, PASD3, bHLHe5)
MITF (WS2A, MI, bHLHe32)
MXI1 (MXD2, MAD2, MXI, bHLHc11)
TFE3 (TFEA, bHLHe33)
CLOCK (KIAA0334, KAT13D, bHLHe8)
OLIG2 (RACK17, OLIGO2, bHLHe19)
MXD4 (MAD4, MSTP149, MST149, bHLHc12)
HEY2 (bHLHb32)
HEY1 (HESR-1, CHF2, HESR1, HRT-1, CHF-2, HERP2, BHLHb31)
HEYL (bHLHb33)
MLXIPL (WS-bHLH, MIO, CHREBP, MONDOB)
HES6 (bHLHc23)
MXD3 (MAD3, bHLHc13)
ARNTL2 (BMAL2, MOP9, CLIF, PASD9, bHLHe6)
ID1 (dJ857M17.1.2, bHLHb24)
MNT (ROX, MXD6, MAD6, bHLHd3)
OLIG1 (BHLHB6, bHLHe21)
NPAS2 (MOP4, PASD4, bHLHe9)
NFE2L1.p2 1.719 NFE2L1 (NRF1, LCR-F1, FLJ00380, TCF11)
EGR1..3.p2 1.718 EGR3 (PILOT)
EGR1 (TIS8, G0S30, NGFI-A, KROX-24, ZIF-268, AT225, ZNF225)
EGR2
CTCF.p2 1.709 CTCF
HMGA1,2.p2 1.706 HMGA1
HMGA2 (BABL, LIPO)
GFI1.p2 1.673 GFI1
STAT5{A,B}.p2 1.672 STAT5B
STAT5A (MGF)
HBP1_HMGB_SSRP1_UBTF.p2 1.668 HMGB2
HMGB3 (HMG2A, MGC90319)
SSRP1 (FACT80)
UBTF (UBF, NOR-90)
HBP1
FOXA2.p3 1.666 FOXA2
TGIF1.p2 1.609 TGIF1
FOXN1.p2 1.591 FOXN1 (FKHL20)
ZBTB6.p2 1.588 ZBTB6 (ZID)
HSF1,2.p2 1.579 HSF1 (HSTF1)
HSF2
BPTF.p2 1.575 BPTF (FAC1, NURF301)
HES1.p2 1.575 HES1 (FLJ20408, HES-1, Hes1, bHLHb39)
NFE2L2.p2 1.570 NFE2L2 (NRF2)
ZNF148.p2 1.550 ZNF148 (BERF-1, ZBP-89, BFCOL1, HT-BETA, ZFP148, pHZ-52)
DBP.p2 1.540 DBP (DABP)
MEF2{A,B,C,D}.p2 1.516 MEF2A (RSRFC4, RSRFC9)
MEF2C
MEF2D
MEF2BNB-MEF2B (MEF2B, LOC729991-MEF2B)
MEF2B (RSRFR2, FLJ32648)
NR1H4.p2 1.512 NR1H4 (FXR, RIP14, HRR1, HRR-1)
EVI1.p2 1.488 EVI1 (MDS1-EVI1, PRDM3)
FOSL2.p2 1.482 FOSL2 (FRA2, FLJ23306)
AHR_ARNT_ARNT2.p2 1.471 ARNT (HIF-1beta, bHLHe2)
AHR
ARNT2 (KIAA0307, bHLHe1)
NFATC1..3.p2 1.466 NFATC3 (NFAT4, NFATX)
NFATC2 (NF-ATP, NFATp, NFAT1)
NFATC1 (NF-ATC, NFATc, NFAT2)
ATF4.p2 1.461 ATF4 (TAXREB67, CREB-2)
NHLH1,2.p2 1.456 NHLH1 (NSCL, NSCL1, bHLHa35)
NHLH2 (NSCL2, bHLHa34)
XBP1.p3 1.437 XBP1
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2 1.420 ARNT (HIF-1beta, bHLHe2)
MAX (bHLHd4)
MYC (c-Myc, bHLHe39)
USF1 (UEF, MLTFI, bHLHb11)
BHLHB2 (DEC1, bHLHe40)
ARNT2 (KIAA0307, bHLHe1)
FOX{D1,D2}.p2 1.410 FOXD2 (FREAC9)
FOXD1 (FREAC4)
PATZ1.p2 1.404 PATZ1 (MAZR, dJ400N23, ZBTB19, ZSG, RIAZ, PATZ)
DMAP1_NCOR{1,2}_SMARC.p2 1.401 SMARCA1 (SNF2LB, NURF140, ISWI, SWI)
SMARCC2 (BAF170, Rsc8, CRACC2)
SMARCA5 (hSNF2H, hISWI, ISWI)
NCOR1 (N-CoR, hCIT529I10, TRAC1, hN-CoR, KIAA1047, MGC104216)
NCOR2 (SMRT, SMRTE, TRAC-1, CTG26, TNRC14)
DMAP1 (DNMAP1, FLJ11543, KIAA1425, DNMTAP1, EAF2, SWC4)
NFKB1_REL_RELA.p2 1.396 RELA (p65)
REL (I-Rel)
NFKB1 (KBF1, p105)
IKZF2.p2 1.395 IKZF2 (Helios)
HOX{A5,B5}.p2 1.393 HOXB5
HOXA5
SOX2.p2 1.386 SOX2
ZFP161.p2 1.381 ZFP161 (ZNF478, ZBTB14)
PRDM1.p3 1.375 PRDM1 (PRDI-BF1)
ZIC1..3.p2 1.365 ZIC1 (ZIC, ZNF201)
ZIC2 (HPE5)
ZIC3 (HTX, ZNF203)
SRY.p2 1.352 SRY (TDF)
PAX4.p2 1.350 PAX4
TFEB.p2 1.348 TFEB
FOXD3.p2 1.344 FOXD3 (Genesis, HFH2)
GTF2I.p2 1.343 GTF2I (TFII-I, BAP-135, SPIN, BTKAP1, DIWS, IB291)
ESRRA.p2 1.340 ESRRA (ERR1, ERRalpha, NR3B1, ERRa)
STAT2,4,6.p2 1.334 STAT2 (STAT113)
STAT4
STAT6 (D12S1644, IL-4-STAT)
HLF.p2 1.315 HLF (MGC33822)
HIF1A.p2 1.309 HIF1A (MOP1, HIF-1alpha, PASD8, HIF1)
TFAP4.p2 1.290 TFAP4 (AP-4)
NKX3-2.p2 1.282 NKX3-2 (NKX3B, NKX3.2)
SOX17.p2 1.280 SOX17
POU1F1.p2 1.270 POU1F1 (GHF-1)
IKZF1.p2 1.247 IKZF1 (hIk-1, LyF-1, Hs.54452, IKAROS)
NFIX.p2 1.243 NFIX (NF1A)
HMX1.p2 1.234 HMX1 (H6, NKX5-3)
LEF1_TCF7_TCF7L1,2.p2 1.226 TCF7 (TCF-1)
TCF7L2 (TCF-4)
LEF1 (TCF1ALPHA)
TCF7L1
NANOG{mouse}.p2 1.222 NANOG (FLJ12581, FLJ40451)
SOX{8,9,10}.p2 1.204 SOX9 (SRA1)
SOX8
SOX10 (DOM, WS4, WS2E)
POU5F1_SOX2{dimer}.p2 1.204 POU5F1 (OCT3, Oct4, MGC22487)
SOX2
RXRA_VDR{dimer}.p2 1.198 VDR (NR1I1)
RXRG_dimer.p3 1.193 NR1H2 (NER, NER-I, RIP15, LXR-b)
RXRA (NR2B1)
PPARG (PPARG1, PPARG2, NR1C3, PPARgamma)
PPARA (hPPAR, NR1C1)
RXRB (NR2B2, H-2RIIBP, RCoR-1)
RXRG (NR2B3)
NANOG.p2 1.188 NANOG (FLJ12581, FLJ40451)
SOX5.p2 1.182 SOX5 (L-SOX5, MGC35153)
FOXL1.p2 1.179 FOXL1 (FREAC7, FKH6)
MYBL2.p2 1.176 MYBL2 (BMYB, B-MYB)
ATF6.p2 1.159 ATF6 (ATF6A)
CRX.p2 1.149 CRX (CRD, LCA7, OTX3)
ONECUT1,2.p2 1.148 ONECUT2 (OC-2)
ONECUT1 (HNF-6)
NFIL3.p2 1.146 NFIL3 (E4BP4, NFIL3A, NF-IL3A)
GFI1B.p2 1.138 GFI1B
NKX3-1.p2 1.131 NKX3-1 (NKX3.1, BAPX2)
POU3F1..4.p2 1.125 POU3F1 (OCT6, SCIP)
POU3F3 (BRN1, OTF8)
POU3F2 (POUF3, BRN2, OCT7)
POU3F4 (BRN4, OTF9)
SREBF1,2.p2 1.124 SREBF1 (SREBP1, bHLHd1)
SREBF2 (SREBP2, bHLHd2)
ADNP_IRX_SIX_ZHX.p2 1.122 SIX5
ZHX1
IRX4
ADNP (KIAA0784, ADNP1)
ZHX3 (KIAA0395)
ZHX2 (KIAA0854)
IRX5 (IRX-2a)
SIX2
LHX3,4.p2 1.116 LHX3
LHX4 (Gsh4)
FOXQ1.p2 1.105 FOXQ1 (HFH1)
FOX{I1,J2}.p2 1.104 FOXI1 (FREAC6)
FOXJ2 (FHX)
POU5F1.p2 1.094 POU5F1 (OCT3, Oct4, MGC22487)
CDX1,2,4.p2 1.067 CDX1
CDX2
CDX4
NKX2-3_NKX2-5.p2 1.063 NKX2-5 (CSX1, NKX2.5, NKX4-1)
NKX2-3 (NKX2.3, CSX3, NKX4-3)
POU6F1.p2 1.046 POU6F1 (BRN5, MPOU, TCFB1)
ALX1.p2 1.009 ALX1
NKX6-1,2.p2 0.979 NKX6-1 (Nkx6.1)
NKX6-2 (NKX6B, GTX, NKX6.1)
TFAP2B.p2 0.942 TFAP2B (AP2-B)
FOXP3.p2 0.933 FOXP3 (JM2, XPID, AIID, PIDX, DIETER, SCURFIN)
ATF2.p2 0.920 ATF2 (TREB7, CRE-BP1, HB16)
NR3C1.p2 0.916 NR3C1 (GR)
FOXO1,3,4.p2 0.915 FOXO1 (FKH1)
FOXO4 (AFX1)
FOXO3 (AF6q21, FOXO2)
SPZ1.p2 0.909 SPZ1 (NYD-TSP1, FLJ25709)
FOX{F1,F2,J1}.p2 0.905 FOXF2 (FREAC2)
FOXJ1 (HFH-4, HFH4)
FOXF1 (FREAC1)
HOX{A4,D4}.p2 0.884 HOXA4
HOXD4
EOMES.p2 0.878 EOMES (TBR2)
TBX4,5.p2 0.871 TBX5
TBX4
FOX{C1,C2}.p2 0.868 FOXC1 (FREAC3, ARA, IGDA, IHG1)
FOXC2 (MFH-1)
MSX1,2.p2 0.862 MSX1 (HYD1, OFC5)
MSX2 (CRS2, FPP, HOX8, MSH, PFM)
RBPJ.p2 0.858 RBPJ (SUH, IGKJRB, RBPJK, KBF2, RBP-J, CBF1)
TAL1_TCF{3,4,12}.p2 0.855 TCF3 (E2A, ITF1, MGC129647, MGC129648, bHLHb21)
TCF4 (SEF2-1B, ITF2, bHLHb19)
TAL1 (SCL, bHLHa17)
TCF12 (HEB, HTF4, HsT17266, bHLHb20)
AIRE.p2 0.848 AIRE (PGA1, APS1)
BACH2.p2 0.839 BACH2
EWSR1-FLI1.p2 0.813 FLI1 (EWSR2, SIC-1)
EWSR1 (EWS, K984G1.4)
NFE2.p2 0.807 NFE2 (NF-E2)
AR.p2 0.797 AR (AIS, NR3C4, SMAX1, HUMARA)
ARID5B.p2 0.777 ARID5B (FLJ21150, MRF2)
CEBPA,B_DDIT3.p2 0.777 DDIT3 (CHOP10, GADD153, CHOP)
CEBPA (C/EBP-alpha)
CEBPB (LAP, CRP2, NFIL6, IL6DBP)
CDC5L.p2 0.749 CDC5L (PCDC5RP, hCDC5, CEF1)
T.p2 0.734 T
STAT1,3.p3 0.703 STAT1 (STAT91, ISGF-3)
STAT3 (APRF)
PBX1.p2 0.690 PBX1
PPARG.p2 0.678 PPARG (PPARG1, PPARG2, NR1C3, PPARgamma)
HOXA9_MEIS1.p2 0.677 MEIS1
HOXA9
TP53.p2 0.658 TP53 (p53, LFS1)
NKX2-1,4.p2 0.610 NKX2-1 (TTF-1)
NKX2-4 (NKX2.4)
NR6A1.p2 0.543 NR6A1 (GCNF1, RTR)
RORA.p2 0.492 RORA (RZRA, ROR1, ROR2, ROR3, NR1F1)
PDX1.p2 0.394 PDX1 (IDX-1, STF-1, PDX-1, MODY4)
VSX1,2.p2 0.391 VSX2 (RET1)
VSX1 (PPD)
CUX2.p2 0.346 CUX2 (KIAA0293, CDP2)
GZF1.p2 0.344 GZF1 (dJ322G13.2, ZBTB23)
PAX6.p2 0.281 PAX6 (D11S812E, AN, WAGR)
PAX8.p2 0.146 PAX8
PAX3,7.p2 0.131 PAX7 (Hup1)
PAX3 (HUP2)

All samples sorted alphabetically


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Project name:

Sample name Condition Replicate/Batch
Rep1_GM12878
Rep1_HepG2
Rep1_HMEC
Rep1_HSMM
Rep1_Huvec
Rep1_K562
Rep1_NHEK
Rep1_NHLF
Rep2_GM12878
Rep2_HepG2
Rep2_HMEC
Rep2_HSMM
Rep2_Huvec
Rep2_K562
Rep2_NHEK
Rep2_NHLF