ISMARA results for ENCODE cell lines, H3K4me3 (Ernst 2011)

ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.

All motifs sorted by activity significance

Motif name Z-value Associated genes Profile Logo
HIC1.p2 8.602 HIC1 (ZBTB29)
HNF1A.p2 8.067 HNF1A (HNF1, LFB1)
HNF4A_NR2F1,2.p2 7.788 NR2F1 (EAR-3, COUP-TFI, TCFCOUP1, SVP44)
NR2F2 (COUP-TFII, COUPTFB, SVP40)
HNF4A (NR2A1, HNF4)
SNAI1..3.p2 7.636 SNAI2 (SLUGH1)
SNAI1 (SNA, SLUGH2, SNAH)
SNAI3 (SMUC, Zfp293)
PITX1..3.p2 6.885 PITX2 (IGDS, RS, Brx1, Otlx2, ARP1)
PITX3
PITX1 (PTX1, POTX)
TFAP2{A,C}.p2 5.892 TFAP2C (AP2-GAMMA, ERF1, TFAP2G, hAP-2g)
TFAP2A (AP-2)
MTF1.p2 5.756 MTF1
NRF1.p2 5.289 NRF1 (EWG, ALPHA-PAL)
GATA6.p2 5.182 GATA6
RUNX1..3.p2 5.181 RUNX1 (PEBP2A2, AMLCR1)
RUNX3 (AML2, PEBP2A3)
RUNX2 (AML3, PEBP2A1, PEBP2aA1)
MZF1.p2 5.076 MZF1 (MZF1B, ZSCAN6, MZF-1, Zfp98)
IRF1,2,7.p3 4.847 IRF1 (MAR, IRF-1)
IRF2 (IRF-2, DKFZp686F0244)
IRF7 (IRF7A, IRF-7H)
FOS_FOS{B,L1}_JUN{B,D}.p2 4.660 FOS (c-fos, AP-1)
JUNB
FOSL1 (fra-1)
JUND (AP-1)
FOSB (G0S3, GOSB, GOS3, AP-1, MGC42291, DKFZp686C0818)
TFCP2.p2 4.642 TFCP2 (CP2, LSF, LBP-1C, TFCP2C)
SPIB.p2 4.481 SPIB (SPI-B)
HOX{A6,A7,B6,B7}.p2 4.340 HOXB6
HOXA7
HOXB7
HOXA6
NFY{A,B,C}.p2 4.223 NFYC (CBF-C)
NFYB (CBF-A, HAP3)
NFYA (HAP2, CBF-B)
EHF.p2 4.154 EHF
TEAD1.p2 4.104 TEAD1 (TEF-1)
TEAD2 (ETF, TEF4, TEF-4, TEAD-2)
TEAD3 (TEF5, TEAD5, TEF-5, DTEF-1, ETFR-1, TEAD-3)
TEAD4 (TEF3, RTEF1, TEF-3, EFTR-2, TEFR-1, TCF13L1, hRTEF-1B)
ELK1,4_GABP{A,B1}.p3 4.053 GABPA (E4TF1A, NFT2, NRF2, E4TF1-60, NRF2A)
GABPB1 (E4TF1-47, GABPB)
ELK4 (SAP1)
ELK1
KLF12.p2 4.024 KLF12 (AP-2rep, HSPC122, AP2REP)
SPI1.p2 3.892 SPI1 (PU.1, SPI-A, OF, SFPI1, SPI-1)
NHLH1,2.p2 3.813 NHLH1 (NSCL, NSCL1, bHLHa35)
NHLH2 (NSCL2, bHLHa34)
MYOD1.p2 3.729 MYOD1 (PUM, MYOD, bHLHc1)
KLF4.p3 3.712 KLF4 (EZF, GKLF)
PRRX1,2.p2 3.691 PRRX2 (PRX2, PMX2)
PRRX1 (PHOX1)
YY1.p2 3.686 YY1 (NF-E1, DELTA, UCRBP, YIN-YANG-1, INO80S)
TFAP2B.p2 3.629 TFAP2B (AP2-B)
EN1,2.p2 3.561 EN1
EN2
FEV.p2 3.553 FEV (PET-1, HSRNAFEV)
EP300.p2 3.506 EP300 (p300, KAT3B)
ETS1,2.p2 3.390 ETS2
ETS1 (FLJ10768, ETS-1)
ZEB1.p2 3.351 ZEB1 (BZP, ZEB, AREB6, NIL-2-A, Zfhep, Zfhx1a)
RREB1.p2 3.308 RREB1 (HNT)
GTF2I.p2 3.276 GTF2I (TFII-I, BAP-135, SPIN, BTKAP1, DIWS, IB291)
EBF1.p2 3.273 EBF1 (OLF1)
TCF4_dimer.p2 3.224 TCF4 (E2-2, ITF2, PTHS, SEF2, SEF2-1, SEF2-1A, SEF2-1B, bHLHb19, MGC149723, MGC149724)
HBP1_HMGB_SSRP1_UBTF.p2 3.157 HMGB2
HMGB3 (HMG2A, MGC90319)
SSRP1 (FACT80)
UBTF (UBF, NOR-90)
HBP1
MYFfamily.p2 3.143 MYOD1 (PUM, MYOD, bHLHc1)
MYF6 (MRF4, bHLHc4)
MYF5 (bHLHc2)
MYOG (bHLHc3)
ZNF384.p2 3.123 ZNF384 (CAGH1A, CIZ, NMP4, NP)
NFATC1..3.p2 3.062 NFATC3 (NFAT4, NFATX)
NFATC2 (NF-ATP, NFATp, NFAT1)
NFATC1 (NF-ATC, NFATc, NFAT2)
POU2F1..3.p2 3.055 POU2F2 (OCT2)
POU2F1 (OCT1)
POU2F3 (OCT11, PLA-1, Skn-1a, Epoc-1)
PAX5.p2 3.018 PAX5 (BSAP)
MAFB.p2 3.018 MAFB
DMAP1_NCOR{1,2}_SMARC.p2 3.010 SMARCA1 (SNF2LB, NURF140, ISWI, SWI)
SMARCC2 (BAF170, Rsc8, CRACC2)
SMARCA5 (hSNF2H, hISWI, ISWI)
NCOR1 (N-CoR, hCIT529I10, TRAC1, hN-CoR, KIAA1047, MGC104216)
NCOR2 (SMRT, SMRTE, TRAC-1, CTG26, TNRC14)
DMAP1 (DNMAP1, FLJ11543, KIAA1425, DNMTAP1, EAF2, SWC4)
HAND1,2.p2 2.990 HAND1 (eHand, Thing1, Hxt, bHLHa27)
HAND2 (dHand, Thing2, Hed, bHLHa26)
TLX1..3_NFIC{dimer}.p2 2.934 TLX1
TLX3 (RNX)
NFKB1_REL_RELA.p2 2.893 RELA (p65)
REL (I-Rel)
NFKB1 (KBF1, p105)
TFDP1.p2 2.875 TFDP1 (Dp-1, DRTF1, DP1)
SRF.p3 2.831 SRF (MCM1)
FOXA2.p3 2.763 FOXA2
ELF1,2,4.p2 2.742 ELF2 (EU32, NERF, NERF-2, NERF-1A, NERF-1B)
ELF1
ELF4 (MEF, ELFR)
CRX.p2 2.719 CRX (CRD, LCA7, OTX3)
RFX1..5_RFXANK_RFXAP.p2 2.714 RFX1 (EF-C)
RFXAP
RFX5
RFXANK (BLS, RFX-B, ANKRA1, F14150_1, MGC138628)
RFX4
RFX3
RFX2 (FLJ14226)
ZBTB16.p2 2.712 ZBTB16 (PLZF)
RXR{A,B,G}.p2 2.704 RXRA (NR2B1)
RXRB (NR2B2, H-2RIIBP, RCoR-1)
RXRG (NR2B3)
PRDM1.p3 2.698 PRDM1 (PRDI-BF1)
HMGA1,2.p2 2.673 HMGA1
HMGA2 (BABL, LIPO)
PATZ1.p2 2.647 PATZ1 (MAZR, dJ400N23, ZBTB19, ZSG, RIAZ, PATZ)
NR1H4.p2 2.643 NR1H4 (FXR, RIP14, HRR1, HRR-1)
MAZ.p2 2.614 MAZ (ZF87, Pur-1, Zif87, ZNF801)
AHR_ARNT_ARNT2.p2 2.611 ARNT (HIF-1beta, bHLHe2)
AHR
ARNT2 (KIAA0307, bHLHe1)
CTCF.p2 2.584 CTCF
GFI1B.p2 2.538 GFI1B
E2F1..5.p2 2.500 E2F4 (E2F-4)
E2F5
E2F2 (E2F-2)
E2F1 (RBP3)
E2F3
ZFP161.p2 2.493 ZFP161 (ZNF478, ZBTB14)
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2 2.489 ARNT (HIF-1beta, bHLHe2)
MAX (bHLHd4)
MYC (c-Myc, bHLHe39)
USF1 (UEF, MLTFI, bHLHb11)
BHLHB2 (DEC1, bHLHe40)
ARNT2 (KIAA0307, bHLHe1)
ATF5_CREB3.p2 2.456 ATF5
CREB3 (LZIP, Luman)
NR5A1,2.p2 2.408 NR5A1 (FTZ1, SF-1, ELP, AD4BP)
NR5A2 (FTZ-F1beta, hB1F, LRH-1, FTZ-F1, hB1F-2, B1F2)
MEF2{A,B,C,D}.p2 2.385 MEF2A (RSRFC4, RSRFC9)
MEF2C
MEF2D
MEF2BNB-MEF2B (MEF2B, LOC729991-MEF2B)
MEF2B (RSRFR2, FLJ32648)
ZNF143.p2 2.307 ZNF143 (SBF, pHZ-1, STAF)
ESR1.p2 2.296 ESR1 (NR3A1, Era)
BPTF.p2 2.272 BPTF (FAC1, NURF301)
HLF.p2 2.266 HLF (MGC33822)
ZNF423.p2 2.260 ZNF423 (KIAA0760, OAZ, Roaz, Ebfaz, Zfp104)
SMAD1..7,9.p2 2.242 SMAD5 (Dwfc, JV5-1)
SMAD1 (MADR1, JV4-1)
SMAD3 (JV15-2, HsT17436)
SMAD4 (DPC4)
SMAD2 (MADR2, JV18-1)
SMAD6 (HsT17432)
SMAD7
SMAD9
POU5F1.p2 2.228 POU5F1 (OCT3, Oct4, MGC22487)
NKX2-2,8.p2 2.223 NKX2-2 (NKX2.2)
NKX2-8 (NKX2.8, Nkx2-9)
MYB.p2 2.183 MYB (c-myb)
ESRRA.p2 2.169 ESRRA (ERR1, ERRalpha, NR3B1, ERRa)
GFI1.p2 2.165 GFI1
ZIC1..3.p2 2.099 ZIC1 (ZIC, ZNF201)
ZIC2 (HPE5)
ZIC3 (HTX, ZNF203)
ONECUT1,2.p2 2.094 ONECUT2 (OC-2)
ONECUT1 (HNF-6)
MSX1,2.p2 2.085 MSX1 (HYD1, OFC5)
MSX2 (CRS2, FPP, HOX8, MSH, PFM)
DBP.p2 2.082 DBP (DABP)
IKZF2.p2 2.072 IKZF2 (Helios)
ZNF238.p2 2.054 ZNF238 (C2H2-171, TAZ-1, RP58, ZBTB18)
TGIF1.p2 2.040 TGIF1
GATA1..3.p2 2.033 GATA1 (ERYF1, NFE1)
GATA2 (NFE1B)
GATA3 (HDR)
XBP1.p3 2.024 XBP1
EVI1.p2 2.016 EVI1 (MDS1-EVI1, PRDM3)
ZNF148.p2 2.006 ZNF148 (BERF-1, ZBP-89, BFCOL1, HT-BETA, ZFP148, pHZ-52)
bHLH_family.p2 1.994 ARNTL (MOP3, JAP3, BMAL1, PASD3, bHLHe5)
MITF (WS2A, MI, bHLHe32)
MXI1 (MXD2, MAD2, MXI, bHLHc11)
TFE3 (TFEA, bHLHe33)
CLOCK (KIAA0334, KAT13D, bHLHe8)
OLIG2 (RACK17, OLIGO2, bHLHe19)
MXD4 (MAD4, MSTP149, MST149, bHLHc12)
HEY2 (bHLHb32)
HEY1 (HESR-1, CHF2, HESR1, HRT-1, CHF-2, HERP2, BHLHb31)
HEYL (bHLHb33)
MLXIPL (WS-bHLH, MIO, CHREBP, MONDOB)
HES6 (bHLHc23)
MXD3 (MAD3, bHLHc13)
ARNTL2 (BMAL2, MOP9, CLIF, PASD9, bHLHe6)
ID1 (dJ857M17.1.2, bHLHb24)
MNT (ROX, MXD6, MAD6, bHLHd3)
OLIG1 (BHLHB6, bHLHe21)
NPAS2 (MOP4, PASD4, bHLHe9)
TFAP4.p2 1.988 TFAP4 (AP-4)
POU5F1_SOX2{dimer}.p2 1.986 POU5F1 (OCT3, Oct4, MGC22487)
SOX2
POU1F1.p2 1.986 POU1F1 (GHF-1)
JUN.p2 1.978 JUN (c-Jun, AP-1)
JUND (AP-1)
JUNB
ZBTB6.p2 1.966 ZBTB6 (ZID)
GTF2A1,2.p2 1.935 GTF2A1 (TFIIA)
GTF2A2 (TFIIA, HsT18745)
NKX2-1,4.p2 1.921 NKX2-1 (TTF-1)
NKX2-4 (NKX2.4)
LEF1_TCF7_TCF7L1,2.p2 1.914 TCF7 (TCF-1)
TCF7L2 (TCF-4)
LEF1 (TCF1ALPHA)
TCF7L1
SP1.p2 1.894 SP1
CEBPA,B_DDIT3.p2 1.894 DDIT3 (CHOP10, GADD153, CHOP)
CEBPA (C/EBP-alpha)
CEBPB (LAP, CRP2, NFIL6, IL6DBP)
LMO2.p2 1.891 LMO2 (TTG2, RHOM2, RBTN2)
EGR1..3.p2 1.877 EGR3 (PILOT)
EGR1 (TIS8, G0S30, NGFI-A, KROX-24, ZIF-268, AT225, ZNF225)
EGR2
GLI1..3.p2 1.851 GLI1
GLI2 (THP2, HPE9, THP1)
GLI3 (PAP-A, PAPA, PAPA1, PAPB, ACLS, PPDIV)
CREB1.p2 1.838 CREB1
HIF1A.p2 1.780 HIF1A (MOP1, HIF-1alpha, PASD8, HIF1)
NFE2L1.p2 1.777 NFE2L1 (NRF1, LCR-F1, FLJ00380, TCF11)
SOX{8,9,10}.p2 1.760 SOX9 (SRA1)
SOX8
SOX10 (DOM, WS4, WS2E)
TBP.p2 1.758 TBP (TFIID)
NKX3-2.p2 1.758 NKX3-2 (NKX3B, NKX3.2)
TFEB.p2 1.743 TFEB
SOX2.p2 1.738 SOX2
FOX{I1,J2}.p2 1.733 FOXI1 (FREAC6)
FOXJ2 (FHX)
REST.p3 1.733 REST (NRSF, XBR)
NFIX.p2 1.724 NFIX (NF1A)
NFE2L2.p2 1.722 NFE2L2 (NRF2)
HOX{A5,B5}.p2 1.701 HOXB5
HOXA5
SPZ1.p2 1.695 SPZ1 (NYD-TSP1, FLJ25709)
CDC5L.p2 1.662 CDC5L (PCDC5RP, hCDC5, CEF1)
SRY.p2 1.637 SRY (TDF)
FOXP3.p2 1.632 FOXP3 (JM2, XPID, AIID, PIDX, DIETER, SCURFIN)
SOX5.p2 1.626 SOX5 (L-SOX5, MGC35153)
PAX4.p2 1.619 PAX4
HOX{A4,D4}.p2 1.597 HOXA4
HOXD4
HMX1.p2 1.577 HMX1 (H6, NKX5-3)
RXRA_VDR{dimer}.p2 1.547 VDR (NR1I1)
POU6F1.p2 1.544 POU6F1 (BRN5, MPOU, TCFB1)
TAL1_TCF{3,4,12}.p2 1.542 TCF3 (E2A, ITF1, MGC129647, MGC129648, bHLHb21)
TCF4 (SEF2-1B, ITF2, bHLHb19)
TAL1 (SCL, bHLHa17)
TCF12 (HEB, HTF4, HsT17266, bHLHb20)
POU3F1..4.p2 1.520 POU3F1 (OCT6, SCIP)
POU3F3 (BRN1, OTF8)
POU3F2 (POUF3, BRN2, OCT7)
POU3F4 (BRN4, OTF9)
ATF6.p2 1.514 ATF6 (ATF6A)
FOX{F1,F2,J1}.p2 1.477 FOXF2 (FREAC2)
FOXJ1 (HFH-4, HFH4)
FOXF1 (FREAC1)
RBPJ.p2 1.437 RBPJ (SUH, IGKJRB, RBPJK, KBF2, RBP-J, CBF1)
SOX17.p2 1.432 SOX17
TLX2.p2 1.431 TLX2 (Enx, Tlx2, NCX)
FOX{D1,D2}.p2 1.424 FOXD2 (FREAC9)
FOXD1 (FREAC4)
FOXQ1.p2 1.421 FOXQ1 (HFH1)
IKZF1.p2 1.406 IKZF1 (hIk-1, LyF-1, Hs.54452, IKAROS)
PBX1.p2 1.400 PBX1
FOSL2.p2 1.397 FOSL2 (FRA2, FLJ23306)
STAT2,4,6.p2 1.375 STAT2 (STAT113)
STAT4
STAT6 (D12S1644, IL-4-STAT)
T.p2 1.375 T
PPARG.p2 1.350 PPARG (PPARG1, PPARG2, NR1C3, PPARgamma)
STAT5{A,B}.p2 1.334 STAT5B
STAT5A (MGF)
FOXL1.p2 1.333 FOXL1 (FREAC7, FKH6)
SREBF1,2.p2 1.323 SREBF1 (SREBP1, bHLHd1)
SREBF2 (SREBP2, bHLHd2)
TP53.p2 1.315 TP53 (p53, LFS1)
FOXN1.p2 1.311 FOXN1 (FKHL20)
ARID5B.p2 1.307 ARID5B (FLJ21150, MRF2)
MYBL2.p2 1.302 MYBL2 (BMYB, B-MYB)
NR3C1.p2 1.301 NR3C1 (GR)
NKX3-1.p2 1.282 NKX3-1 (NKX3.1, BAPX2)
FOXO1,3,4.p2 1.237 FOXO1 (FKH1)
FOXO4 (AFX1)
FOXO3 (AF6q21, FOXO2)
HSF1,2.p2 1.235 HSF1 (HSTF1)
HSF2
ALX1.p2 1.220 ALX1
HOXA9_MEIS1.p2 1.208 MEIS1
HOXA9
CDX1,2,4.p2 1.199 CDX1
CDX2
CDX4
AIRE.p2 1.183 AIRE (PGA1, APS1)
NANOG{mouse}.p2 1.181 NANOG (FLJ12581, FLJ40451)
NKX2-3_NKX2-5.p2 1.173 NKX2-5 (CSX1, NKX2.5, NKX4-1)
NKX2-3 (NKX2.3, CSX3, NKX4-3)
NKX6-1,2.p2 1.141 NKX6-1 (Nkx6.1)
NKX6-2 (NKX6B, GTX, NKX6.1)
NFE2.p2 1.140 NFE2 (NF-E2)
TBX4,5.p2 1.126 TBX5
TBX4
RXRG_dimer.p3 1.114 NR1H2 (NER, NER-I, RIP15, LXR-b)
RXRA (NR2B1)
PPARG (PPARG1, PPARG2, NR1C3, PPARgamma)
PPARA (hPPAR, NR1C1)
RXRB (NR2B2, H-2RIIBP, RCoR-1)
RXRG (NR2B3)
LHX3,4.p2 1.104 LHX3
LHX4 (Gsh4)
ATF4.p2 1.099 ATF4 (TAXREB67, CREB-2)
FOX{C1,C2}.p2 1.079 FOXC1 (FREAC3, ARA, IGDA, IHG1)
FOXC2 (MFH-1)
ADNP_IRX_SIX_ZHX.p2 1.061 SIX5
ZHX1
IRX4
ADNP (KIAA0784, ADNP1)
ZHX3 (KIAA0395)
ZHX2 (KIAA0854)
IRX5 (IRX-2a)
SIX2
PAX2.p2 1.035 PAX2
EOMES.p2 1.020 EOMES (TBR2)
BACH2.p2 1.011 BACH2
EWSR1-FLI1.p2 0.962 FLI1 (EWSR2, SIC-1)
EWSR1 (EWS, K984G1.4)
NANOG.p2 0.957 NANOG (FLJ12581, FLJ40451)
CUX2.p2 0.903 CUX2 (KIAA0293, CDP2)
STAT1,3.p3 0.894 STAT1 (STAT91, ISGF-3)
STAT3 (APRF)
FOXD3.p2 0.887 FOXD3 (Genesis, HFH2)
HES1.p2 0.842 HES1 (FLJ20408, HES-1, Hes1, bHLHb39)
ATF2.p2 0.832 ATF2 (TREB7, CRE-BP1, HB16)
AR.p2 0.826 AR (AIS, NR3C4, SMAX1, HUMARA)
VSX1,2.p2 0.801 VSX2 (RET1)
VSX1 (PPD)
GZF1.p2 0.691 GZF1 (dJ322G13.2, ZBTB23)
NFIL3.p2 0.680 NFIL3 (E4BP4, NFIL3A, NF-IL3A)
RORA.p2 0.654 RORA (RZRA, ROR1, ROR2, ROR3, NR1F1)
NR6A1.p2 0.612 NR6A1 (GCNF1, RTR)
PDX1.p2 0.504 PDX1 (IDX-1, STF-1, PDX-1, MODY4)
PAX6.p2 0.476 PAX6 (D11S812E, AN, WAGR)
PAX8.p2 0.269 PAX8
PAX3,7.p2 0.239 PAX7 (Hup1)
PAX3 (HUP2)

All samples sorted alphabetically


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Sample name Condition Replicate/Batch
Rep1_Gm12878
Rep1_Hepg2
Rep1_Hmec
Rep1_Hsmm
Rep1_Huvec_V2
Rep1_K562_V2
Rep1_Nhek
Rep1_Nhlf
Rep2_Gm12878
Rep2_Hepg2
Rep2_Hmec
Rep2_Hsmm
Rep2_Huvec_V2
Rep2_K562_V2
Rep2_Nhek
Rep2_Nhlf