ISMARA results for ENCODE cell lines, expression (Ernst 2011)

ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.

All motifs sorted by activity significance

Motif name Z-value Associated genes Profile Logo
E2F1..5.p2 6.472 E2F4 (E2F-4)
E2F5
E2F2 (E2F-2)
E2F1 (RBP3)
E2F3
IRF1,2,7.p3 5.243 IRF1 (MAR, IRF-1)
IRF2 (IRF-2, DKFZp686F0244)
IRF7 (IRF7A, IRF-7H)
SNAI1..3.p2 4.658 SNAI2 (SLUGH1)
SNAI1 (SNA, SLUGH2, SNAH)
SNAI3 (SMUC, Zfp293)
HNF1A.p2 4.462 HNF1A (HNF1, LFB1)
SRF.p3 4.222 SRF (MCM1)
ZNF143.p2 4.130 ZNF143 (SBF, pHZ-1, STAF)
NFY{A,B,C}.p2 4.037 NFYC (CBF-C)
NFYB (CBF-A, HAP3)
NFYA (HAP2, CBF-B)
FOS_FOS{B,L1}_JUN{B,D}.p2 4.023 FOS (c-fos, AP-1)
JUNB
FOSL1 (fra-1)
JUND (AP-1)
FOSB (G0S3, GOSB, GOS3, AP-1, MGC42291, DKFZp686C0818)
NRF1.p2 3.984 NRF1 (EWG, ALPHA-PAL)
POU2F1..3.p2 3.968 POU2F2 (OCT2)
POU2F1 (OCT1)
POU2F3 (OCT11, PLA-1, Skn-1a, Epoc-1)
HNF4A_NR2F1,2.p2 3.941 NR2F1 (EAR-3, COUP-TFI, TCFCOUP1, SVP44)
NR2F2 (COUP-TFII, COUPTFB, SVP40)
HNF4A (NR2A1, HNF4)
HIC1.p2 3.904 HIC1 (ZBTB29)
YY1.p2 3.717 YY1 (NF-E1, DELTA, UCRBP, YIN-YANG-1, INO80S)
MTF1.p2 3.691 MTF1
TEAD1.p2 3.683 TEAD1 (TEF-1)
TEAD2 (ETF, TEF4, TEF-4, TEAD-2)
TEAD3 (TEF5, TEAD5, TEF-5, DTEF-1, ETFR-1, TEAD-3)
TEAD4 (TEF3, RTEF1, TEF-3, EFTR-2, TEFR-1, TCF13L1, hRTEF-1B)
TBP.p2 3.338 TBP (TFIID)
ELK1,4_GABP{A,B1}.p3 3.321 GABPA (E4TF1A, NFT2, NRF2, E4TF1-60, NRF2A)
GABPB1 (E4TF1-47, GABPB)
ELK4 (SAP1)
ELK1
NFKB1_REL_RELA.p2 3.287 RELA (p65)
REL (I-Rel)
NFKB1 (KBF1, p105)
PITX1..3.p2 3.286 PITX2 (IGDS, RS, Brx1, Otlx2, ARP1)
PITX3
PITX1 (PTX1, POTX)
MYB.p2 3.162 MYB (c-myb)
KLF4.p3 3.162 KLF4 (EZF, GKLF)
XBP1.p3 3.156 XBP1
MYFfamily.p2 3.120 MYOD1 (PUM, MYOD, bHLHc1)
MYF6 (MRF4, bHLHc4)
MYF5 (bHLHc2)
MYOG (bHLHc3)
TLX1..3_NFIC{dimer}.p2 3.034 TLX1
TLX3 (RNX)
ZEB1.p2 3.028 ZEB1 (BZP, ZEB, AREB6, NIL-2-A, Zfhep, Zfhx1a)
HOX{A6,A7,B6,B7}.p2 2.998 HOXB6
HOXA7
HOXB7
HOXA6
GUGCAAA 2.917 hsa-miR-19a
hsa-miR-19b
RUNX1..3.p2 2.883 RUNX1 (PEBP2A2, AMLCR1)
RUNX3 (AML2, PEBP2A3)
RUNX2 (AML3, PEBP2A1, PEBP2aA1)
SPI1.p2 2.853 SPI1 (PU.1, SPI-A, OF, SFPI1, SPI-1)
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2 2.722 ARNT (HIF-1beta, bHLHe2)
MAX (bHLHd4)
MYC (c-Myc, bHLHe39)
USF1 (UEF, MLTFI, bHLHb11)
BHLHB2 (DEC1, bHLHe40)
ARNT2 (KIAA0307, bHLHe1)
TFEB.p2 2.715 TFEB
MZF1.p2 2.711 MZF1 (MZF1B, ZSCAN6, MZF-1, Zfp98)
NFIX.p2 2.548 NFIX (NF1A)
TFCP2.p2 2.502 TFCP2 (CP2, LSF, LBP-1C, TFCP2C)
CUCCCAA 2.464 hsa-miR-150
MEF2{A,B,C,D}.p2 2.416 MEF2A (RSRFC4, RSRFC9)
MEF2C
MEF2D
MEF2BNB-MEF2B (MEF2B, LOC729991-MEF2B)
MEF2B (RSRFR2, FLJ32648)
TFAP2{A,C}.p2 2.372 TFAP2C (AP2-GAMMA, ERF1, TFAP2G, hAP-2g)
TFAP2A (AP-2)
NHLH1,2.p2 2.361 NHLH1 (NSCL, NSCL1, bHLHa35)
NHLH2 (NSCL2, bHLHa34)
AGCACCA 2.338 hsa-miR-29a
hsa-miR-29b
hsa-miR-29c
MYOD1.p2 2.330 MYOD1 (PUM, MYOD, bHLHc1)
AAUACUG 2.297 hsa-miR-200b
hsa-miR-200c
hsa-miR-429
FOXA2.p3 2.283 FOXA2
AUUGCAC 2.274 hsa-miR-25
hsa-miR-32
hsa-miR-92a
hsa-miR-92b
hsa-miR-363
hsa-miR-367
HBP1_HMGB_SSRP1_UBTF.p2 2.269 HMGB2
HMGB3 (HMG2A, MGC90319)
SSRP1 (FACT80)
UBTF (UBF, NOR-90)
HBP1
UCCAGUU 2.244 hsa-miR-145
HES1.p2 2.227 HES1 (FLJ20408, HES-1, Hes1, bHLHb39)
AAAGUGC 2.187 hsa-miR-17
hsa-miR-20a
hsa-miR-20b
hsa-miR-93
hsa-miR-106a
hsa-miR-106b
hsa-miR-519d
TFDP1.p2 2.185 TFDP1 (Dp-1, DRTF1, DP1)
EP300.p2 2.161 EP300 (p300, KAT3B)
EHF.p2 2.156 EHF
TCF4_dimer.p2 2.144 TCF4 (E2-2, ITF2, PTHS, SEF2, SEF2-1, SEF2-1A, SEF2-1B, bHLHb19, MGC149723, MGC149724)
NR5A1,2.p2 2.114 NR5A1 (FTZ1, SF-1, ELP, AD4BP)
NR5A2 (FTZ-F1beta, hB1F, LRH-1, FTZ-F1, hB1F-2, B1F2)
GATA1..3.p2 2.103 GATA1 (ERYF1, NFE1)
GATA2 (NFE1B)
GATA3 (HDR)
TBX4,5.p2 2.097 TBX5
TBX4
SMAD1..7,9.p2 2.093 SMAD5 (Dwfc, JV5-1)
SMAD1 (MADR1, JV4-1)
SMAD3 (JV15-2, HsT17436)
SMAD4 (DPC4)
SMAD2 (MADR2, JV18-1)
SMAD6 (HsT17432)
SMAD7
SMAD9
POU5F1.p2 2.077 POU5F1 (OCT3, Oct4, MGC22487)
ZNF238.p2 2.020 ZNF238 (C2H2-171, TAZ-1, RP58, ZBTB18)
PRDM1.p3 2.016 PRDM1 (PRDI-BF1)
AAGGCAC 1.998 hsa-miR-124
hsa-miR-506
bHLH_family.p2 1.992 ARNTL (MOP3, JAP3, BMAL1, PASD3, bHLHe5)
MITF (WS2A, MI, bHLHe32)
MXI1 (MXD2, MAD2, MXI, bHLHc11)
TFE3 (TFEA, bHLHe33)
CLOCK (KIAA0334, KAT13D, bHLHe8)
OLIG2 (RACK17, OLIGO2, bHLHe19)
MXD4 (MAD4, MSTP149, MST149, bHLHc12)
HEY2 (bHLHb32)
HEY1 (HESR-1, CHF2, HESR1, HRT-1, CHF-2, HERP2, BHLHb31)
HEYL (bHLHb33)
MLXIPL (WS-bHLH, MIO, CHREBP, MONDOB)
HES6 (bHLHc23)
MXD3 (MAD3, bHLHc13)
ARNTL2 (BMAL2, MOP9, CLIF, PASD9, bHLHe6)
ID1 (dJ857M17.1.2, bHLHb24)
MNT (ROX, MXD6, MAD6, bHLHd3)
OLIG1 (BHLHB6, bHLHe21)
NPAS2 (MOP4, PASD4, bHLHe9)
MSX1,2.p2 1.975 MSX1 (HYD1, OFC5)
MSX2 (CRS2, FPP, HOX8, MSH, PFM)
SPIB.p2 1.959 SPIB (SPI-B)
LEF1_TCF7_TCF7L1,2.p2 1.958 TCF7 (TCF-1)
TCF7L2 (TCF-4)
LEF1 (TCF1ALPHA)
TCF7L1
ATF6.p2 1.901 ATF6 (ATF6A)
ZBTB16.p2 1.892 ZBTB16 (PLZF)
GUAGUGU 1.854 hsa-miR-142-3p
DMAP1_NCOR{1,2}_SMARC.p2 1.844 SMARCA1 (SNF2LB, NURF140, ISWI, SWI)
SMARCC2 (BAF170, Rsc8, CRACC2)
SMARCA5 (hSNF2H, hISWI, ISWI)
NCOR1 (N-CoR, hCIT529I10, TRAC1, hN-CoR, KIAA1047, MGC104216)
NCOR2 (SMRT, SMRTE, TRAC-1, CTG26, TNRC14)
DMAP1 (DNMAP1, FLJ11543, KIAA1425, DNMTAP1, EAF2, SWC4)
IKZF1.p2 1.842 IKZF1 (hIk-1, LyF-1, Hs.54452, IKAROS)
HIF1A.p2 1.839 HIF1A (MOP1, HIF-1alpha, PASD8, HIF1)
RREB1.p2 1.838 RREB1 (HNT)
GATA6.p2 1.829 GATA6
ZNF148.p2 1.817 ZNF148 (BERF-1, ZBP-89, BFCOL1, HT-BETA, ZFP148, pHZ-52)
AHR_ARNT_ARNT2.p2 1.812 ARNT (HIF-1beta, bHLHe2)
AHR
ARNT2 (KIAA0307, bHLHe1)
NKX3-1.p2 1.797 NKX3-1 (NKX3.1, BAPX2)
CCCUGAG 1.782 hsa-miR-125a-5p
hsa-miR-125b
hsa-miR-4319
ETS1,2.p2 1.767 ETS2
ETS1 (FLJ10768, ETS-1)
GGCUCAG 1.749 hsa-miR-24
RFX1..5_RFXANK_RFXAP.p2 1.732 RFX1 (EF-C)
RFXAP
RFX5
RFXANK (BLS, RFX-B, ANKRA1, F14150_1, MGC138628)
RFX4
RFX3
RFX2 (FLJ14226)
ESR1.p2 1.724 ESR1 (NR3A1, Era)
STAT2,4,6.p2 1.713 STAT2 (STAT113)
STAT4
STAT6 (D12S1644, IL-4-STAT)
IKZF2.p2 1.712 IKZF2 (Helios)
RXR{A,B,G}.p2 1.701 RXRA (NR2B1)
RXRB (NR2B2, H-2RIIBP, RCoR-1)
RXRG (NR2B3)
NFE2L1.p2 1.700 NFE2L1 (NRF1, LCR-F1, FLJ00380, TCF11)
HLF.p2 1.693 HLF (MGC33822)
FOX{F1,F2,J1}.p2 1.688 FOXF2 (FREAC2)
FOXJ1 (HFH-4, HFH4)
FOXF1 (FREAC1)
CUUUGGU 1.678 hsa-miR-9
NR4A2.p2 1.664 NR4A2 (NOT, RNR1, HZF-3, NURR1, TINUR)
KLF12.p2 1.629 KLF12 (AP-2rep, HSPC122, AP2REP)
HAND1,2.p2 1.628 HAND1 (eHand, Thing1, Hxt, bHLHa27)
HAND2 (dHand, Thing2, Hed, bHLHa26)
GAGGUAG 1.620 hsa-let-7a
hsa-let-7b
hsa-let-7c
hsa-let-7d
hsa-let-7e
hsa-let-7f
hsa-let-7g
hsa-let-7i
hsa-miR-98
hsa-miR-4458
hsa-miR-4500
HSF1,2.p2 1.617 HSF1 (HSTF1)
HSF2
NFATC1..3.p2 1.596 NFATC3 (NFAT4, NFATX)
NFATC2 (NF-ATP, NFATp, NFAT1)
NFATC1 (NF-ATC, NFATc, NFAT2)
GFI1.p2 1.580 GFI1
SOX17.p2 1.578 SOX17
GTF2A1,2.p2 1.577 GTF2A1 (TFIIA)
GTF2A2 (TFIIA, HsT18745)
SOX{8,9,10}.p2 1.576 SOX9 (SRA1)
SOX8
SOX10 (DOM, WS4, WS2E)
TFAP2B.p2 1.554 TFAP2B (AP2-B)
FOX{C1,C2}.p2 1.538 FOXC1 (FREAC3, ARA, IGDA, IHG1)
FOXC2 (MFH-1)
PRRX1,2.p2 1.537 PRRX2 (PRX2, PMX2)
PRRX1 (PHOX1)
UGUGCUU 1.536 hsa-miR-218
DBP.p2 1.534 DBP (DABP)
GGAAUGU 1.527 hsa-miR-1
hsa-miR-206
hsa-miR-613
ZNF384.p2 1.526 ZNF384 (CAGH1A, CIZ, NMP4, NP)
SREBF1,2.p2 1.524 SREBF1 (SREBP1, bHLHd1)
SREBF2 (SREBP2, bHLHd2)
POU6F1.p2 1.522 POU6F1 (BRN5, MPOU, TCFB1)
NKX6-1,2.p2 1.519 NKX6-1 (Nkx6.1)
NKX6-2 (NKX6B, GTX, NKX6.1)
ESRRA.p2 1.503 ESRRA (ERR1, ERRalpha, NR3B1, ERRa)
FOXO1,3,4.p2 1.499 FOXO1 (FKH1)
FOXO4 (AFX1)
FOXO3 (AF6q21, FOXO2)
GTF2I.p2 1.493 GTF2I (TFII-I, BAP-135, SPIN, BTKAP1, DIWS, IB291)
CCAGUGU 1.483 hsa-miR-199a-5p
hsa-miR-199b-5p
MAFB.p2 1.477 MAFB
ATF5_CREB3.p2 1.471 ATF5
CREB3 (LZIP, Luman)
NFE2L2.p2 1.467 NFE2L2 (NRF2)
NKX3-2.p2 1.456 NKX3-2 (NKX3B, NKX3.2)
AACACUG 1.438 hsa-miR-141
hsa-miR-200a
UUUUUGC 1.434 hsa-miR-129-5p
PATZ1.p2 1.433 PATZ1 (MAZR, dJ400N23, ZBTB19, ZSG, RIAZ, PATZ)
SOX5.p2 1.422 SOX5 (L-SOX5, MGC35153)
AGCAGCA 1.421 hsa-miR-15a
hsa-miR-15b
hsa-miR-16
hsa-miR-195
hsa-miR-424
hsa-miR-497
TGIF1.p2 1.418 TGIF1
POU1F1.p2 1.405 POU1F1 (GHF-1)
FOXN1.p2 1.398 FOXN1 (FKHL20)
AGCUGCC 1.391 hsa-miR-22
ELF1,2,4.p2 1.383 ELF2 (EU32, NERF, NERF-2, NERF-1A, NERF-1B)
ELF1
ELF4 (MEF, ELFR)
TFAP4.p2 1.381 TFAP4 (AP-4)
LMO2.p2 1.377 LMO2 (TTG2, RHOM2, RBTN2)
POU5F1_SOX2{dimer}.p2 1.371 POU5F1 (OCT3, Oct4, MGC22487)
SOX2
ZNF423.p2 1.337 ZNF423 (KIAA0760, OAZ, Roaz, Ebfaz, Zfp104)
UUGGUCC 1.320 hsa-miR-133a
hsa-miR-133b
NFE2.p2 1.299 NFE2 (NF-E2)
PAX4.p2 1.296 PAX4
JUN.p2 1.295 JUN (c-Jun, AP-1)
JUND (AP-1)
JUNB
FOX{D1,D2}.p2 1.292 FOXD2 (FREAC9)
FOXD1 (FREAC4)
ONECUT1,2.p2 1.291 ONECUT2 (OC-2)
ONECUT1 (HNF-6)
BACH2.p2 1.283 BACH2
UCACAUU 1.277 hsa-miR-23a
hsa-miR-23b
hsa-miR-23c
ATF4.p2 1.277 ATF4 (TAXREB67, CREB-2)
FEV.p2 1.248 FEV (PET-1, HSRNAFEV)
CDC5L.p2 1.246 CDC5L (PCDC5RP, hCDC5, CEF1)
MAZ.p2 1.245 MAZ (ZF87, Pur-1, Zif87, ZNF801)
ZFP161.p2 1.244 ZFP161 (ZNF478, ZBTB14)
TP53.p2 1.235 TP53 (p53, LFS1)
EBF1.p2 1.232 EBF1 (OLF1)
NKX2-1,4.p2 1.222 NKX2-1 (TTF-1)
NKX2-4 (NKX2.4)
AAGGUGC 1.219 hsa-miR-18a
hsa-miR-18b
hsa-miR-4735-3p
PAX5.p2 1.216 PAX5 (BSAP)
UCAAGUA 1.215 hsa-miR-26a
hsa-miR-26b
hsa-miR-1297
hsa-miR-4465
RXRG_dimer.p3 1.213 NR1H2 (NER, NER-I, RIP15, LXR-b)
RXRA (NR2B1)
PPARG (PPARG1, PPARG2, NR1C3, PPARgamma)
PPARA (hPPAR, NR1C1)
RXRB (NR2B2, H-2RIIBP, RCoR-1)
RXRG (NR2B3)
HMX1.p2 1.208 HMX1 (H6, NKX5-3)
MYBL2.p2 1.207 MYBL2 (BMYB, B-MYB)
AGCAGCG 1.199 hsa-miR-503
UAUUGCU 1.196 hsa-miR-137
EGR1..3.p2 1.195 EGR3 (PILOT)
EGR1 (TIS8, G0S30, NGFI-A, KROX-24, ZIF-268, AT225, ZNF225)
EGR2
GAUUGUC 1.192 hsa-miR-219-5p
hsa-miR-4782-3p
ACAUUCA 1.189 hsa-miR-181a
hsa-miR-181b
hsa-miR-181c
hsa-miR-181d
hsa-miR-4262
CRX.p2 1.183 CRX (CRD, LCA7, OTX3)
NKX2-3_NKX2-5.p2 1.167 NKX2-5 (CSX1, NKX2.5, NKX4-1)
NKX2-3 (NKX2.3, CSX3, NKX4-3)
GFI1B.p2 1.165 GFI1B
AIRE.p2 1.162 AIRE (PGA1, APS1)
UGCAUAG 1.159 hsa-miR-153
LHX3,4.p2 1.159 LHX3
LHX4 (Gsh4)
UCACAGU 1.153 hsa-miR-27a
hsa-miR-27b
NR1H4.p2 1.152 NR1H4 (FXR, RIP14, HRR1, HRR-1)
ZBTB6.p2 1.150 ZBTB6 (ZID)
STAT1,3.p3 1.128 STAT1 (STAT91, ISGF-3)
STAT3 (APRF)
GGCAGUG 1.121 hsa-miR-34a
hsa-miR-34c-5p
hsa-miR-449a
hsa-miR-449b
UGAAAUG 1.111 hsa-miR-203
AAUGCCC 1.109 hsa-miR-365
FOXL1.p2 1.098 FOXL1 (FREAC7, FKH6)
POU3F1..4.p2 1.094 POU3F1 (OCT6, SCIP)
POU3F3 (BRN1, OTF8)
POU3F2 (POUF3, BRN2, OCT7)
POU3F4 (BRN4, OTF9)
FOSL2.p2 1.088 FOSL2 (FRA2, FLJ23306)
ATF2.p2 1.082 ATF2 (TREB7, CRE-BP1, HB16)
HMGA1,2.p2 1.072 HMGA1
HMGA2 (BABL, LIPO)
AGGUAGU 1.068 hsa-miR-196a
hsa-miR-196b
SRY.p2 1.068 SRY (TDF)
PPARG.p2 1.055 PPARG (PPARG1, PPARG2, NR1C3, PPARgamma)
NANOG.p2 1.054 NANOG (FLJ12581, FLJ40451)
FOXD3.p2 1.052 FOXD3 (Genesis, HFH2)
SOX2.p2 1.047 SOX2
ZIC1..3.p2 1.042 ZIC1 (ZIC, ZNF201)
ZIC2 (HPE5)
ZIC3 (HTX, ZNF203)
GCAGCAU 1.038 hsa-miR-103a
hsa-miR-107
CREB1.p2 1.030 CREB1
GUAAACA 1.027 hsa-miR-30a
hsa-miR-30b
hsa-miR-30c
hsa-miR-30d
hsa-miR-30e
TLX2.p2 1.013 TLX2 (Enx, Tlx2, NCX)
FOXQ1.p2 1.012 FOXQ1 (HFH1)
RBPJ.p2 1.005 RBPJ (SUH, IGKJRB, RBPJK, KBF2, RBP-J, CBF1)
HOX{A5,B5}.p2 0.998 HOXB5
HOXA5
AR.p2 0.997 AR (AIS, NR3C4, SMAX1, HUMARA)
NANOG{mouse}.p2 0.994 NANOG (FLJ12581, FLJ40451)
AACAGUC 0.977 hsa-miR-132
hsa-miR-212
SP1.p2 0.976 SP1
AUGGCUU 0.973 hsa-miR-135a
hsa-miR-135b
NR3C1.p2 0.969 NR3C1 (GR)
EOMES.p2 0.966 EOMES (TBR2)
ALX1.p2 0.964 ALX1
CUX2.p2 0.950 CUX2 (KIAA0293, CDP2)
EWSR1-FLI1.p2 0.949 FLI1 (EWSR2, SIC-1)
EWSR1 (EWS, K984G1.4)
FOX{I1,J2}.p2 0.941 FOXI1 (FREAC6)
FOXJ2 (FHX)
CTCF.p2 0.940 CTCF
CAGUGCA 0.930 hsa-miR-148a
hsa-miR-148b
hsa-miR-152
UUGGCAA 0.928 hsa-miR-182
CEBPA,B_DDIT3.p2 0.928 DDIT3 (CHOP10, GADD153, CHOP)
CEBPA (C/EBP-alpha)
CEBPB (LAP, CRP2, NFIL6, IL6DBP)
GUAACAG 0.927 hsa-miR-194
GCUGGUG 0.920 hsa-miR-138
NKX2-2,8.p2 0.912 NKX2-2 (NKX2.2)
NKX2-8 (NKX2.8, Nkx2-9)
PAX2.p2 0.911 PAX2
SPZ1.p2 0.896 SPZ1 (NYD-TSP1, FLJ25709)
STAT5{A,B}.p2 0.890 STAT5B
STAT5A (MGF)
EN1,2.p2 0.865 EN1
EN2
RORA.p2 0.865 RORA (RZRA, ROR1, ROR2, ROR3, NR1F1)
AGUGCAA 0.853 hsa-miR-130a
hsa-miR-130b
hsa-miR-301a
hsa-miR-301b
hsa-miR-454
hsa-miR-3666
hsa-miR-4295
ACAGUAU 0.844 hsa-miR-144
ADNP_IRX_SIX_ZHX.p2 0.836 SIX5
ZHX1
IRX4
ADNP (KIAA0784, ADNP1)
ZHX3 (KIAA0395)
ZHX2 (KIAA0854)
IRX5 (IRX-2a)
SIX2
AAGUGCU 0.827 hsa-miR-302a
hsa-miR-302b
hsa-miR-302c
hsa-miR-302d
hsa-miR-302e
hsa-miR-372
hsa-miR-373
hsa-miR-520a-3p
hsa-miR-520b
hsa-miR-520c-3p
hsa-miR-520d-3p
hsa-miR-520e
AGUGGUU 0.818 hsa-miR-140-5p
GAGAACU 0.813 hsa-miR-146a
hsa-miR-146b-5p
UUGUUCG 0.810 hsa-miR-375
GLI1..3.p2 0.810 GLI1
GLI2 (THP2, HPE9, THP1)
GLI3 (PAP-A, PAPA, PAPA1, PAPB, ACLS, PPDIV)
FOXP3.p2 0.798 FOXP3 (JM2, XPID, AIID, PIDX, DIETER, SCURFIN)
TAL1_TCF{3,4,12}.p2 0.791 TCF3 (E2A, ITF1, MGC129647, MGC129648, bHLHb21)
TCF4 (SEF2-1B, ITF2, bHLHb19)
TAL1 (SCL, bHLHa17)
TCF12 (HEB, HTF4, HsT17266, bHLHb20)
CACAGUG 0.786 hsa-miR-128
CCUUCAU 0.785 hsa-miR-205
UAAUGCU 0.782 hsa-miR-155
NR6A1.p2 0.776 NR6A1 (GCNF1, RTR)
NFIL3.p2 0.772 NFIL3 (E4BP4, NFIL3A, NF-IL3A)
HOXA9_MEIS1.p2 0.756 MEIS1
HOXA9
BPTF.p2 0.755 BPTF (FAC1, NURF301)
ARID5B.p2 0.752 ARID5B (FLJ21150, MRF2)
CDX1,2,4.p2 0.735 CDX1
CDX2
CDX4
REST.p3 0.720 REST (NRSF, XBR)
ACAGUAC 0.717 hsa-miR-101
GUCAGUU 0.710 hsa-miR-223
CAGCAGG 0.698 hsa-miR-214
hsa-miR-761
hsa-miR-3619-5p
GCUACAU 0.674 hsa-miR-221
hsa-miR-222
CCAGCAU 0.665 hsa-miR-338-3p
RXRA_VDR{dimer}.p2 0.658 VDR (NR1I1)
CUACAGU 0.655 hsa-miR-139-5p
UGCAUUG 0.650 hsa-miR-33a
hsa-miR-33b
GGCAAGA 0.647 hsa-miR-31
GAGAUGA 0.647 hsa-miR-143
hsa-miR-4770
UUGGCAC 0.636 hsa-miR-96
hsa-miR-1271
UCCCUUU 0.632 hsa-miR-204
hsa-miR-211
GGAAGAC 0.628 hsa-miR-7
CGUACCG 0.616 hsa-miR-126
AACGGAA 0.609 hsa-miR-191
PDX1.p2 0.589 PDX1 (IDX-1, STF-1, PDX-1, MODY4)
AGCUUAU 0.586 hsa-miR-21
hsa-miR-590-5p
GAUCAGA 0.574 hsa-miR-383
UAAGACU 0.563 hsa-miR-499-5p
T.p2 0.537 T
GZF1.p2 0.536 GZF1 (dJ322G13.2, ZBTB23)
CGUGUCU 0.532 hsa-miR-187
ACCCUGU 0.530 hsa-miR-10a
hsa-miR-10b
AAUCUCU 0.530 hsa-miR-216b
EVI1.p2 0.512 EVI1 (MDS1-EVI1, PRDM3)
AUGGCAC 0.492 hsa-miR-183
ACUGGCC 0.464 hsa-miR-193a-3p
hsa-miR-193b
AACCUGG 0.464 hsa-miR-490-3p
GGAGUGU 0.454 hsa-miR-122
VSX1,2.p2 0.450 VSX2 (RET1)
VSX1 (PPD)
HOX{A4,D4}.p2 0.441 HOXA4
HOXD4
GAUAUGU 0.437 hsa-miR-190
hsa-miR-190b
AUGACAC 0.421 hsa-miR-425
UAAGACG 0.420 hsa-miR-208a
hsa-miR-208b
UGUGCGU 0.385 hsa-miR-210
AUGUGCC 0.380 hsa-miR-455-5p
UGACCUA 0.349 hsa-miR-192
hsa-miR-215
AAUCUCA 0.347 hsa-miR-216a
ACUGCAU 0.337 hsa-miR-217
PAX6.p2 0.325 PAX6 (D11S812E, AN, WAGR)
GGACGGA 0.313 hsa-miR-184
PBX1.p2 0.256 PBX1
AACCGUU 0.186 hsa-miR-451
PAX8.p2 0.172 PAX8
PAX3,7.p2 0.124 PAX7 (Hup1)
PAX3 (HUP2)
ACCCGUA 0.041 hsa-miR-99a
hsa-miR-99b
hsa-miR-100

All samples sorted alphabetically


Your email address:
Project name:

Sample name Condition Replicate/Batch
Rep1_GM12878
Rep1_HepG2
Rep1_HMEC
Rep1_HSMM
Rep1_HUVEC
Rep1_K562
Rep1_NHEK
Rep1_NHLF
Rep2_GM12878
Rep2_HepG2
Rep2_HMEC
Rep2_HSMM
Rep2_HUVEC
Rep2_K562
Rep2_NHEK
Rep2_NHLF