ISMARA results for ENCODE cell lines, CTCF (Ernst 2011)

ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.

All motifs sorted by activity significance

Motif name Z-value Associated genes Profile Logo
CTCF.p2 9.123 CTCF
HIC1.p2 7.201 HIC1 (ZBTB29)
SNAI1..3.p2 5.086 SNAI2 (SLUGH1)
SNAI1 (SNA, SLUGH2, SNAH)
SNAI3 (SMUC, Zfp293)
NRF1.p2 4.847 NRF1 (EWG, ALPHA-PAL)
TFAP2{A,C}.p2 4.823 TFAP2C (AP2-GAMMA, ERF1, TFAP2G, hAP-2g)
TFAP2A (AP-2)
PRRX1,2.p2 4.402 PRRX2 (PRX2, PMX2)
PRRX1 (PHOX1)
PITX1..3.p2 4.164 PITX2 (IGDS, RS, Brx1, Otlx2, ARP1)
PITX3
PITX1 (PTX1, POTX)
TFAP2B.p2 4.075 TFAP2B (AP2-B)
HNF4A_NR2F1,2.p2 4.054 NR2F1 (EAR-3, COUP-TFI, TCFCOUP1, SVP44)
NR2F2 (COUP-TFII, COUPTFB, SVP40)
HNF4A (NR2A1, HNF4)
HMGA1,2.p2 3.844 HMGA1
HMGA2 (BABL, LIPO)
MTF1.p2 3.760 MTF1
ELK1,4_GABP{A,B1}.p3 3.583 GABPA (E4TF1A, NFT2, NRF2, E4TF1-60, NRF2A)
GABPB1 (E4TF1-47, GABPB)
ELK4 (SAP1)
ELK1
ZNF143.p2 3.571 ZNF143 (SBF, pHZ-1, STAF)
NFY{A,B,C}.p2 3.213 NFYC (CBF-C)
NFYB (CBF-A, HAP3)
NFYA (HAP2, CBF-B)
ZBTB16.p2 3.171 ZBTB16 (PLZF)
PAX5.p2 3.020 PAX5 (BSAP)
SP1.p2 3.017 SP1
NHLH1,2.p2 2.982 NHLH1 (NSCL, NSCL1, bHLHa35)
NHLH2 (NSCL2, bHLHa34)
TFCP2.p2 2.965 TFCP2 (CP2, LSF, LBP-1C, TFCP2C)
FOS_FOS{B,L1}_JUN{B,D}.p2 2.912 FOS (c-fos, AP-1)
JUNB
FOSL1 (fra-1)
JUND (AP-1)
FOSB (G0S3, GOSB, GOS3, AP-1, MGC42291, DKFZp686C0818)
POU2F1..3.p2 2.884 POU2F2 (OCT2)
POU2F1 (OCT1)
POU2F3 (OCT11, PLA-1, Skn-1a, Epoc-1)
HNF1A.p2 2.878 HNF1A (HNF1, LFB1)
MAFB.p2 2.786 MAFB
EBF1.p2 2.752 EBF1 (OLF1)
MZF1.p2 2.702 MZF1 (MZF1B, ZSCAN6, MZF-1, Zfp98)
TEAD1.p2 2.656 TEAD1 (TEF-1)
TEAD2 (ETF, TEF4, TEF-4, TEAD-2)
TEAD3 (TEF5, TEAD5, TEF-5, DTEF-1, ETFR-1, TEAD-3)
TEAD4 (TEF3, RTEF1, TEF-3, EFTR-2, TEFR-1, TCF13L1, hRTEF-1B)
AHR_ARNT_ARNT2.p2 2.584 ARNT (HIF-1beta, bHLHe2)
AHR
ARNT2 (KIAA0307, bHLHe1)
HOX{A6,A7,B6,B7}.p2 2.580 HOXB6
HOXA7
HOXB7
HOXA6
IRF1,2,7.p3 2.522 IRF1 (MAR, IRF-1)
IRF2 (IRF-2, DKFZp686F0244)
IRF7 (IRF7A, IRF-7H)
EN1,2.p2 2.519 EN1
EN2
YY1.p2 2.466 YY1 (NF-E1, DELTA, UCRBP, YIN-YANG-1, INO80S)
ZNF384.p2 2.457 ZNF384 (CAGH1A, CIZ, NMP4, NP)
KLF4.p3 2.430 KLF4 (EZF, GKLF)
RFX1..5_RFXANK_RFXAP.p2 2.428 RFX1 (EF-C)
RFXAP
RFX5
RFXANK (BLS, RFX-B, ANKRA1, F14150_1, MGC138628)
RFX4
RFX3
RFX2 (FLJ14226)
EP300.p2 2.384 EP300 (p300, KAT3B)
TFDP1.p2 2.356 TFDP1 (Dp-1, DRTF1, DP1)
GTF2I.p2 2.353 GTF2I (TFII-I, BAP-135, SPIN, BTKAP1, DIWS, IB291)
PATZ1.p2 2.351 PATZ1 (MAZR, dJ400N23, ZBTB19, ZSG, RIAZ, PATZ)
MYFfamily.p2 2.321 MYOD1 (PUM, MYOD, bHLHc1)
MYF6 (MRF4, bHLHc4)
MYF5 (bHLHc2)
MYOG (bHLHc3)
NKX3-1.p2 2.294 NKX3-1 (NKX3.1, BAPX2)
ESR1.p2 2.290 ESR1 (NR3A1, Era)
BPTF.p2 2.282 BPTF (FAC1, NURF301)
IKZF2.p2 2.276 IKZF2 (Helios)
NFATC1..3.p2 2.229 NFATC3 (NFAT4, NFATX)
NFATC2 (NF-ATP, NFATp, NFAT1)
NFATC1 (NF-ATC, NFATc, NFAT2)
KLF12.p2 2.216 KLF12 (AP-2rep, HSPC122, AP2REP)
ZNF423.p2 2.170 ZNF423 (KIAA0760, OAZ, Roaz, Ebfaz, Zfp104)
EHF.p2 2.151 EHF
MEF2{A,B,C,D}.p2 2.146 MEF2A (RSRFC4, RSRFC9)
MEF2C
MEF2D
MEF2BNB-MEF2B (MEF2B, LOC729991-MEF2B)
MEF2B (RSRFR2, FLJ32648)
GATA1..3.p2 2.120 GATA1 (ERYF1, NFE1)
GATA2 (NFE1B)
GATA3 (HDR)
SPIB.p2 2.112 SPIB (SPI-B)
MYOD1.p2 2.092 MYOD1 (PUM, MYOD, bHLHc1)
STAT2,4,6.p2 2.081 STAT2 (STAT113)
STAT4
STAT6 (D12S1644, IL-4-STAT)
NFE2L1.p2 2.081 NFE2L1 (NRF1, LCR-F1, FLJ00380, TCF11)
DBP.p2 2.078 DBP (DABP)
RUNX1..3.p2 2.075 RUNX1 (PEBP2A2, AMLCR1)
RUNX3 (AML2, PEBP2A3)
RUNX2 (AML3, PEBP2A1, PEBP2aA1)
SRY.p2 2.068 SRY (TDF)
HBP1_HMGB_SSRP1_UBTF.p2 2.052 HMGB2
HMGB3 (HMG2A, MGC90319)
SSRP1 (FACT80)
UBTF (UBF, NOR-90)
HBP1
NFKB1_REL_RELA.p2 2.025 RELA (p65)
REL (I-Rel)
NFKB1 (KBF1, p105)
CRX.p2 1.984 CRX (CRD, LCA7, OTX3)
CDX1,2,4.p2 1.963 CDX1
CDX2
CDX4
GATA6.p2 1.947 GATA6
ELF1,2,4.p2 1.929 ELF2 (EU32, NERF, NERF-2, NERF-1A, NERF-1B)
ELF1
ELF4 (MEF, ELFR)
EVI1.p2 1.919 EVI1 (MDS1-EVI1, PRDM3)
POU1F1.p2 1.910 POU1F1 (GHF-1)
FOXQ1.p2 1.907 FOXQ1 (HFH1)
TGIF1.p2 1.888 TGIF1
SPZ1.p2 1.869 SPZ1 (NYD-TSP1, FLJ25709)
TLX1..3_NFIC{dimer}.p2 1.863 TLX1
TLX3 (RNX)
FOXO1,3,4.p2 1.853 FOXO1 (FKH1)
FOXO4 (AFX1)
FOXO3 (AF6q21, FOXO2)
ZEB1.p2 1.835 ZEB1 (BZP, ZEB, AREB6, NIL-2-A, Zfhep, Zfhx1a)
POU3F1..4.p2 1.833 POU3F1 (OCT6, SCIP)
POU3F3 (BRN1, OTF8)
POU3F2 (POUF3, BRN2, OCT7)
POU3F4 (BRN4, OTF9)
ZFP161.p2 1.829 ZFP161 (ZNF478, ZBTB14)
ZNF148.p2 1.823 ZNF148 (BERF-1, ZBP-89, BFCOL1, HT-BETA, ZFP148, pHZ-52)
LEF1_TCF7_TCF7L1,2.p2 1.809 TCF7 (TCF-1)
TCF7L2 (TCF-4)
LEF1 (TCF1ALPHA)
TCF7L1
ESRRA.p2 1.789 ESRRA (ERR1, ERRalpha, NR3B1, ERRa)
NFE2L2.p2 1.789 NFE2L2 (NRF2)
NKX2-2,8.p2 1.786 NKX2-2 (NKX2.2)
NKX2-8 (NKX2.8, Nkx2-9)
FOXL1.p2 1.784 FOXL1 (FREAC7, FKH6)
POU5F1_SOX2{dimer}.p2 1.773 POU5F1 (OCT3, Oct4, MGC22487)
SOX2
CDC5L.p2 1.731 CDC5L (PCDC5RP, hCDC5, CEF1)
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2 1.722 ARNT (HIF-1beta, bHLHe2)
MAX (bHLHd4)
MYC (c-Myc, bHLHe39)
USF1 (UEF, MLTFI, bHLHb11)
BHLHB2 (DEC1, bHLHe40)
ARNT2 (KIAA0307, bHLHe1)
HAND1,2.p2 1.717 HAND1 (eHand, Thing1, Hxt, bHLHa27)
HAND2 (dHand, Thing2, Hed, bHLHa26)
DMAP1_NCOR{1,2}_SMARC.p2 1.683 SMARCA1 (SNF2LB, NURF140, ISWI, SWI)
SMARCC2 (BAF170, Rsc8, CRACC2)
SMARCA5 (hSNF2H, hISWI, ISWI)
NCOR1 (N-CoR, hCIT529I10, TRAC1, hN-CoR, KIAA1047, MGC104216)
NCOR2 (SMRT, SMRTE, TRAC-1, CTG26, TNRC14)
DMAP1 (DNMAP1, FLJ11543, KIAA1425, DNMTAP1, EAF2, SWC4)
TFAP4.p2 1.683 TFAP4 (AP-4)
HES1.p2 1.665 HES1 (FLJ20408, HES-1, Hes1, bHLHb39)
ATF5_CREB3.p2 1.655 ATF5
CREB3 (LZIP, Luman)
ZBTB6.p2 1.655 ZBTB6 (ZID)
RXR{A,B,G}.p2 1.637 RXRA (NR2B1)
RXRB (NR2B2, H-2RIIBP, RCoR-1)
RXRG (NR2B3)
SOX17.p2 1.618 SOX17
GLI1..3.p2 1.608 GLI1
GLI2 (THP2, HPE9, THP1)
GLI3 (PAP-A, PAPA, PAPA1, PAPB, ACLS, PPDIV)
SOX{8,9,10}.p2 1.605 SOX9 (SRA1)
SOX8
SOX10 (DOM, WS4, WS2E)
CREB1.p2 1.605 CREB1
bHLH_family.p2 1.600 ARNTL (MOP3, JAP3, BMAL1, PASD3, bHLHe5)
MITF (WS2A, MI, bHLHe32)
MXI1 (MXD2, MAD2, MXI, bHLHc11)
TFE3 (TFEA, bHLHe33)
CLOCK (KIAA0334, KAT13D, bHLHe8)
OLIG2 (RACK17, OLIGO2, bHLHe19)
MXD4 (MAD4, MSTP149, MST149, bHLHc12)
HEY2 (bHLHb32)
HEY1 (HESR-1, CHF2, HESR1, HRT-1, CHF-2, HERP2, BHLHb31)
HEYL (bHLHb33)
MLXIPL (WS-bHLH, MIO, CHREBP, MONDOB)
HES6 (bHLHc23)
MXD3 (MAD3, bHLHc13)
ARNTL2 (BMAL2, MOP9, CLIF, PASD9, bHLHe6)
ID1 (dJ857M17.1.2, bHLHb24)
MNT (ROX, MXD6, MAD6, bHLHd3)
OLIG1 (BHLHB6, bHLHe21)
NPAS2 (MOP4, PASD4, bHLHe9)
ETS1,2.p2 1.600 ETS2
ETS1 (FLJ10768, ETS-1)
NKX3-2.p2 1.587 NKX3-2 (NKX3B, NKX3.2)
SMAD1..7,9.p2 1.584 SMAD5 (Dwfc, JV5-1)
SMAD1 (MADR1, JV4-1)
SMAD3 (JV15-2, HsT17436)
SMAD4 (DPC4)
SMAD2 (MADR2, JV18-1)
SMAD6 (HsT17432)
SMAD7
SMAD9
AR.p2 1.584 AR (AIS, NR3C4, SMAX1, HUMARA)
FOXA2.p3 1.573 FOXA2
MAZ.p2 1.572 MAZ (ZF87, Pur-1, Zif87, ZNF801)
HLF.p2 1.546 HLF (MGC33822)
FEV.p2 1.513 FEV (PET-1, HSRNAFEV)
RREB1.p2 1.510 RREB1 (HNT)
TCF4_dimer.p2 1.504 TCF4 (E2-2, ITF2, PTHS, SEF2, SEF2-1, SEF2-1A, SEF2-1B, bHLHb19, MGC149723, MGC149724)
EGR1..3.p2 1.500 EGR3 (PILOT)
EGR1 (TIS8, G0S30, NGFI-A, KROX-24, ZIF-268, AT225, ZNF225)
EGR2
TBP.p2 1.471 TBP (TFIID)
MYBL2.p2 1.465 MYBL2 (BMYB, B-MYB)
E2F1..5.p2 1.452 E2F4 (E2F-4)
E2F5
E2F2 (E2F-2)
E2F1 (RBP3)
E2F3
HIF1A.p2 1.447 HIF1A (MOP1, HIF-1alpha, PASD8, HIF1)
IKZF1.p2 1.441 IKZF1 (hIk-1, LyF-1, Hs.54452, IKAROS)
ADNP_IRX_SIX_ZHX.p2 1.438 SIX5
ZHX1
IRX4
ADNP (KIAA0784, ADNP1)
ZHX3 (KIAA0395)
ZHX2 (KIAA0854)
IRX5 (IRX-2a)
SIX2
NFIX.p2 1.434 NFIX (NF1A)
PAX2.p2 1.415 PAX2
NR3C1.p2 1.406 NR3C1 (GR)
GTF2A1,2.p2 1.406 GTF2A1 (TFIIA)
GTF2A2 (TFIIA, HsT18745)
SPI1.p2 1.396 SPI1 (PU.1, SPI-A, OF, SFPI1, SPI-1)
GFI1.p2 1.385 GFI1
NR5A1,2.p2 1.381 NR5A1 (FTZ1, SF-1, ELP, AD4BP)
NR5A2 (FTZ-F1beta, hB1F, LRH-1, FTZ-F1, hB1F-2, B1F2)
POU5F1.p2 1.365 POU5F1 (OCT3, Oct4, MGC22487)
GFI1B.p2 1.364 GFI1B
ARID5B.p2 1.348 ARID5B (FLJ21150, MRF2)
SOX5.p2 1.332 SOX5 (L-SOX5, MGC35153)
HSF1,2.p2 1.326 HSF1 (HSTF1)
HSF2
HMX1.p2 1.325 HMX1 (H6, NKX5-3)
SRF.p3 1.319 SRF (MCM1)
PRDM1.p3 1.298 PRDM1 (PRDI-BF1)
TLX2.p2 1.296 TLX2 (Enx, Tlx2, NCX)
JUN.p2 1.279 JUN (c-Jun, AP-1)
JUND (AP-1)
JUNB
RBPJ.p2 1.269 RBPJ (SUH, IGKJRB, RBPJK, KBF2, RBP-J, CBF1)
ZNF238.p2 1.264 ZNF238 (C2H2-171, TAZ-1, RP58, ZBTB18)
FOXP3.p2 1.255 FOXP3 (JM2, XPID, AIID, PIDX, DIETER, SCURFIN)
ONECUT1,2.p2 1.253 ONECUT2 (OC-2)
ONECUT1 (HNF-6)
NR1H4.p2 1.253 NR1H4 (FXR, RIP14, HRR1, HRR-1)
HOX{A5,B5}.p2 1.252 HOXB5
HOXA5
ATF4.p2 1.241 ATF4 (TAXREB67, CREB-2)
ZIC1..3.p2 1.240 ZIC1 (ZIC, ZNF201)
ZIC2 (HPE5)
ZIC3 (HTX, ZNF203)
HOX{A4,D4}.p2 1.237 HOXA4
HOXD4
NFE2.p2 1.217 NFE2 (NF-E2)
XBP1.p3 1.195 XBP1
STAT5{A,B}.p2 1.194 STAT5B
STAT5A (MGF)
BACH2.p2 1.189 BACH2
SREBF1,2.p2 1.157 SREBF1 (SREBP1, bHLHd1)
SREBF2 (SREBP2, bHLHd2)
LMO2.p2 1.147 LMO2 (TTG2, RHOM2, RBTN2)
TFEB.p2 1.135 TFEB
FOXD3.p2 1.124 FOXD3 (Genesis, HFH2)
ALX1.p2 1.118 ALX1
ATF6.p2 1.117 ATF6 (ATF6A)
REST.p3 1.099 REST (NRSF, XBR)
FOX{I1,J2}.p2 1.094 FOXI1 (FREAC6)
FOXJ2 (FHX)
MYB.p2 1.091 MYB (c-myb)
NKX2-1,4.p2 1.088 NKX2-1 (TTF-1)
NKX2-4 (NKX2.4)
ATF2.p2 1.047 ATF2 (TREB7, CRE-BP1, HB16)
TBX4,5.p2 1.047 TBX5
TBX4
SOX2.p2 1.029 SOX2
NANOG{mouse}.p2 1.019 NANOG (FLJ12581, FLJ40451)
TP53.p2 1.018 TP53 (p53, LFS1)
FOXN1.p2 0.990 FOXN1 (FKHL20)
TAL1_TCF{3,4,12}.p2 0.984 TCF3 (E2A, ITF1, MGC129647, MGC129648, bHLHb21)
TCF4 (SEF2-1B, ITF2, bHLHb19)
TAL1 (SCL, bHLHa17)
TCF12 (HEB, HTF4, HsT17266, bHLHb20)
NKX6-1,2.p2 0.981 NKX6-1 (Nkx6.1)
NKX6-2 (NKX6B, GTX, NKX6.1)
HOXA9_MEIS1.p2 0.961 MEIS1
HOXA9
POU6F1.p2 0.957 POU6F1 (BRN5, MPOU, TCFB1)
FOX{D1,D2}.p2 0.926 FOXD2 (FREAC9)
FOXD1 (FREAC4)
NANOG.p2 0.923 NANOG (FLJ12581, FLJ40451)
FOX{F1,F2,J1}.p2 0.920 FOXF2 (FREAC2)
FOXJ1 (HFH-4, HFH4)
FOXF1 (FREAC1)
EOMES.p2 0.897 EOMES (TBR2)
FOSL2.p2 0.895 FOSL2 (FRA2, FLJ23306)
PBX1.p2 0.855 PBX1
PPARG.p2 0.853 PPARG (PPARG1, PPARG2, NR1C3, PPARgamma)
LHX3,4.p2 0.850 LHX3
LHX4 (Gsh4)
CEBPA,B_DDIT3.p2 0.837 DDIT3 (CHOP10, GADD153, CHOP)
CEBPA (C/EBP-alpha)
CEBPB (LAP, CRP2, NFIL6, IL6DBP)
FOX{C1,C2}.p2 0.803 FOXC1 (FREAC3, ARA, IGDA, IHG1)
FOXC2 (MFH-1)
RXRG_dimer.p3 0.802 NR1H2 (NER, NER-I, RIP15, LXR-b)
RXRA (NR2B1)
PPARG (PPARG1, PPARG2, NR1C3, PPARgamma)
PPARA (hPPAR, NR1C1)
RXRB (NR2B2, H-2RIIBP, RCoR-1)
RXRG (NR2B3)
PAX4.p2 0.788 PAX4
NFIL3.p2 0.777 NFIL3 (E4BP4, NFIL3A, NF-IL3A)
CUX2.p2 0.734 CUX2 (KIAA0293, CDP2)
EWSR1-FLI1.p2 0.730 FLI1 (EWSR2, SIC-1)
EWSR1 (EWS, K984G1.4)
NKX2-3_NKX2-5.p2 0.717 NKX2-5 (CSX1, NKX2.5, NKX4-1)
NKX2-3 (NKX2.3, CSX3, NKX4-3)
RXRA_VDR{dimer}.p2 0.672 VDR (NR1I1)
RORA.p2 0.621 RORA (RZRA, ROR1, ROR2, ROR3, NR1F1)
NR6A1.p2 0.602 NR6A1 (GCNF1, RTR)
AIRE.p2 0.590 AIRE (PGA1, APS1)
PDX1.p2 0.535 PDX1 (IDX-1, STF-1, PDX-1, MODY4)
PAX6.p2 0.527 PAX6 (D11S812E, AN, WAGR)
STAT1,3.p3 0.519 STAT1 (STAT91, ISGF-3)
STAT3 (APRF)
T.p2 0.515 T
MSX1,2.p2 0.460 MSX1 (HYD1, OFC5)
MSX2 (CRS2, FPP, HOX8, MSH, PFM)
GZF1.p2 0.449 GZF1 (dJ322G13.2, ZBTB23)
VSX1,2.p2 0.382 VSX2 (RET1)
VSX1 (PPD)
PAX8.p2 0.113 PAX8
PAX3,7.p2 0.081 PAX7 (Hup1)
PAX3 (HUP2)

All samples sorted alphabetically


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Project name:

Sample name Condition Replicate/Batch
Rep1_GM12878
Rep1_HepG2
Rep1_HMEC
Rep1_HSMM
Rep1_Huvec
Rep1_K562
Rep1_NHEK
Rep1_NHLF
Rep2_GM12878
Rep2_HepG2
Rep2_HMEC
Rep2_HSMM
Rep2_Huvec
Rep2_K562
Rep2_NHEK
Rep2_NHLF