ISMARA results for avrg: GSE58827: Dynamics of the Mouse Liver

ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.

Link to original results

Averaging sample configuration

Sample Condition
Day_-002_rep1Day_-2
Day_-002_rep2Day_-2
Day_-002_rep3Day_-2
Day_00_rep1Day_0
Day_00_rep2Day_0
Day_00_rep3Day_0
Day_01_rep1Day_1
Day_01_rep2Day_1
Day_01_rep3Day_1
Day_03_rep1Day_3
Day_03_rep2Day_3
Day_03_rep3Day_3
Day_05_rep1Day_5
Day_05_rep2Day_5
Day_05_rep3Day_5
Day_10_rep1Day_10
Day_10_rep2Day_10
Day_10_rep3Day_10
Day_15_rep1Day_!5
Day_15_rep2Day_!5
Day_15_rep3Day_!5
Day_20_rep1Day_20
Day_20_rep2Day_20
Day_20_rep3Day_20
Day_25_rep1Day_25
Day_25_rep2Day_25
Day_25_rep3Day_25
Day_30_rep1Day_30
Day_30_rep2Day_30
Day_30_rep3Day_30
Day_45_rep1Day_45
Day_45_rep2Day_45
Day_45_rep3Day_45
Day_60_rep1Day_60
Day_60_rep2Day_60
Day_60_rep3Day_60

All motifs sorted by activity significance

Motif name Z-value Associated genes Profile Logo
Hnf4a 7.613 Hnf4a
Nr2e1 7.307 Nr2e1
E2f2_E2f5 7.118 E2f2
E2f5
E2f1 6.523 E2f1
Tal1 6.093 Tal1
Gata2_Gata1 5.580 Gata2
Gata1
Pou1f1 5.282 Pou1f1
Ybx1_Nfya_Nfyb_Nfyc_Cebpz 5.093 Ybx1
Nfya
Nfyb
Nfyc
Cebpz
Pparg_Rxrg 4.932 Pparg
Rxrg
Spic 4.866 Spic
E2f4 4.667 E2f4
Erg 4.525 Erg
Cebpe 4.329 Cebpe
Tfdp1_Wt1_Egr2 4.290 Tfdp1
Wt1
Egr2
Foxp1_Foxj2 4.071 Foxp1
Foxj2
Maz_Zfp281 4.069 Maz
Zfp281
Spib 4.023 Spib
Nrf1 3.996 Nrf1
Hnf1b 3.973 Hnf1b
Hcfc1_Six5_Smarcc2_Zfp143 3.839 Hcfc1
Six5
Smarcc2
Zfp143
Runx2_Bcl11a 3.823 Runx2
Bcl11a
Spi1 3.794 Spi1
Hdx 3.679 Hdx
Klf1 3.633 Klf1
Gata5 3.609 Gata5
Elf5 3.543 Elf5
Dlx1 3.525 Dlx1
Sp1 3.510 Sp1
Myf6 3.459 Myf6
Hes5_Hes7 3.436 Hes5
Hes7
Etv1_Etv5_Gabpa 3.327 Etv1
Etv5
Gabpa
Hnf4g 3.280 Hnf4g
Zfx_Zfp711 3.262 Zfx
Zfp711
Nfil3_Tef 3.210 Nfil3
Tef
Sox2 3.196 Sox2
Myb 3.165 Myb
Gata4 3.153 Gata4
Mybl1 3.009 Mybl1
Six6 2.959 Six6
Hoxa13 2.915 Hoxa13
Tfcp2 2.909 Tfcp2
Fos 2.899 Fos
Ets1 2.898 Ets1
Nr2c2 2.879 Nr2c2
Tfap2c 2.789 Tfap2c
Bptf 2.769 Bptf
Foxj3_Tbl1xr1 2.766 Foxj3
Tbl1xr1
Plag1 2.750 Plag1
Nr1h4 2.702 Nr1h4
Sox18_Sox12 2.701 Sox18
Sox12
Hnf1a 2.686 Hnf1a
Ebf1 2.683 Ebf1
Ebf1
Ebf3 2.666 Ebf3
Foxa2_Foxa1 2.631 Foxa2
Foxa1
Nfia 2.603 Nfia
Nr1i3 2.592 Nr1i3
Mybl2 2.590 Mybl2
Hoxa2 2.577 Hoxa2
Gli3_Zic1 2.547 Gli3
Zic1
Pou3f4 2.532 Pou3f4
Sox4 2.518 Sox4
Hic2 2.486 Hic2
E2f8 2.474 E2f8
Klf4_Sp3 2.469 Klf4
Sp3
Cebpb 2.463 Cebpb
Etv4 2.438 Etv4
Tbp 2.408 Tbp
Olig2_Olig3 2.372 Olig2
Olig3
Nr2f1_Nr4a1 2.365 Nr2f1
Nr4a1
Hoxb13 2.354 Hoxb13
Mecp2 2.354 Mecp2
Elf1_Elf2_Etv2_Elf4 2.340 Elf1
Elf2
Etv2
Elf4
Tgif1_Meis3 2.330 Tgif1
Meis3
Ets2 2.325 Ets2
Pitx2_Otx2 2.324 Pitx2
Otx2
E2f7 2.322 E2f7
Zbtb18 2.319 Zbtb18
Tbx19 2.310 Tbx19
Zbtb14 2.305 Zbtb14
Myod1 2.299 Myod1
Nfe2_Bach1_Mafk 2.292 Nfe2
Bach1
Mafk
Cux1 2.269 Cux1
Tbx5 2.265 Tbx5
Hoxd11_Cdx1_Hoxc11 2.265 Hoxd11
Cdx1
Hoxc11
Hmx1 2.251 Hmx1
Fli1 2.250 Fli1
Klf16_Sp8 2.231 Klf16
Sp8
Creb3 2.229 Creb3
Creb1 2.188 Creb1
Nkx3-1 2.175 Nkx3-1
Nkx6-2 2.174 Nkx6-2
Thrb 2.153 Thrb
Arntl_Tfe3_Mlx_Mitf_Mlxipl_Tfec 2.150 Arntl
Tfe3
Mlx
Mitf
Mlxipl
Tfec
Cebpd 2.148 Cebpd
Tbx2 2.144 Tbx2
Prdm1 2.135 Prdm1
Jun 2.120 Jun
Tcf3 2.102 Tcf3
Zbtb4 2.087 Zbtb4
Taf1 2.082 Taf1
Gfi1_Gfi1b 2.066 Gfi1
Gfi1b
Myog_Tcf12 2.027 Myog
Tcf12
UUGGCAA 2.019 mmu-miR-182-5p
Epas1_Bcl3 2.006 Epas1
Bcl3
Id4 1.999 Id4
Runx1 1.978 Runx1
Hoxb8_Pdx1 1.973 Hoxb8
Pdx1
Elf3 1.969 Elf3
Grhl1 1.966 Grhl1
Atf4 1.961 Atf4
Etv3_Erf_Fev_Elk4_Elk1_Elk3 1.954 Etv3
Erf
Fev
Elk4
Elk1
Elk3
Rad21_Smc3 1.946 Rad21
Smc3
Hbp1 1.942 Hbp1
Nanog 1.922 Nanog
Isl2 1.920 Isl2
Hoxa4 1.919 Hoxa4
Neurog2 1.911 Neurog2
Nr5a2 1.896 Nr5a2
Tcf7_Tcf7l2 1.893 Tcf7
Tcf7l2
Irf2_Irf1_Irf8_Irf9_Irf7 1.867 Irf2
Irf1
Irf8
Irf9
Irf7
AAGGCAC 1.865 mmu-miR-124-3p.1
Pbx2 1.859 Pbx2
Stat6 1.836 Stat6
Atf3 1.835 Atf3
Tbx21 1.828 Tbx21
Gata3 1.817 Gata3
Nfic_Nfib 1.814 Nfic
Nfib
Trp53 1.788 Trp53
Cebpa_Cebpg 1.781 Cebpa
Cebpg
Ptf1a 1.754 Ptf1a
Wrnip1_Mta3_Rcor1 1.749 Wrnip1
Mta3
Rcor1
Hinfp 1.746 Hinfp
Ubp1 1.729 Ubp1
Sox14 1.728 Sox14
Prop1 1.728 Prop1
Pitx3 1.718 Pitx3
Tfeb_Usf1_Srebf1_Usf2_Bhlhe41_Srebf2 1.714 Tfeb
Usf1
Srebf1
Usf2
Bhlhe41
Srebf2
Stat2 1.713 Stat2
Pax2 1.704 Pax2
Nr2f6 1.701 Nr2f6
Klf12_Klf14_Sp4 1.692 Klf12
Klf14
Sp4
Nfatc3 1.691 Nfatc3
Tead3_Tead4 1.681 Tead3
Tead4
Lhx2_Hoxc5 1.679 Lhx2
Hoxc5
Foxf2 1.664 Foxf2
Ar 1.660 Ar
Zbtb33_Chd2 1.660 Zbtb33
Chd2
Hoxb5 1.648 Hoxb5
Twist1 1.640 Twist1
Maf_Nrl 1.638 Maf
Nrl
Nr2f2 1.634 Nr2f2
Chd1_Pml 1.628 Chd1
Pml
Arnt 1.628 Arnt
Meis1 1.623 Meis1
Etv6 1.603 Etv6
Mga 1.595 Mga
Hif1a 1.594 Hif1a
Egr1 1.587 Egr1
Gmeb1 1.582 Gmeb1
Prdm14 1.567 Prdm14
Obox6_Obox5 1.565 Obox6
Obox5
Foxf1 1.564 Foxf1
Zbtb16 1.554 Zbtb16
Mtf1 1.553 Mtf1
Ezh2_Atf2_Ikzf1 1.550 Ezh2
Atf2
Ikzf1
Smarcc1_Fosl1 1.537 Smarcc1
Fosl1
Egr3 1.536 Egr3
Smad1 1.535 Smad1
Zfp282 1.523 Zfp282
En1 1.522 En1
Hoxa10 1.512 Hoxa10
Vsx2_Dlx3 1.500 Vsx2
Dlx3
GUAAACA 1.498 mmu-miR-30a-5p
mmu-miR-30b-5p
mmu-miR-30c-5p
mmu-miR-30d-5p
mmu-miR-30e-5p
mmu-miR-384-5p
Mef2d_Mef2a 1.487 Mef2d
Mef2a
Irf3 1.487 Irf3
Insm1 1.484 Insm1
Gli2 1.482 Gli2
Ppara 1.477 Ppara
Creb3l2 1.474 Creb3l2
AGCACCA 1.465 mmu-miR-29a-3p
mmu-miR-29b-3p
mmu-miR-29c-3p
Foxo6 1.465 Foxo6
Pou2f1 1.456 Pou2f1
Hsf4 1.453 Hsf4
Hand1 1.452 Hand1
En2 1.450 En2
Tcf4_Mesp1 1.446 Tcf4
Mesp1
Pou2f2_Pou3f1 1.446 Pou2f2
Pou3f1
Pou2f3 1.445 Pou2f3
Dmc1 1.444 Dmc1
Homez 1.440 Homez
Hic1 1.429 Hic1
Rara 1.426 Rara
Onecut1_Cux2 1.409 Onecut1
Cux2
Cux2
Rxra 1.396 Rxra
Snai1_Zeb1_Snai2 1.396 Snai1
Zeb1
Snai2
AGGUAGU 1.396 mmu-miR-196a-5p
mmu-miR-196b-5p
Cpeb1 1.395 Cpeb1
Pgr_Nr3c1 1.395 Pgr
Nr3c1
Zfp110 1.388 Zfp110
Pax5 1.386 Pax5
Mafb 1.384 Mafb
Hey1_Myc_Mxi1 1.383 Hey1
Myc
Mxi1
Yy1_Yy2 1.373 Yy1
Yy2
Foxk1_Foxj1 1.373 Foxk1
Foxj1
Bcl6 1.371 Bcl6
Nr1h2 1.370 Nr1h2
Foxa3 1.366 Foxa3
UUGGUCC 1.364 mmu-miR-133a-3p.2
mmu-miR-133b-3p
mmu-miR-133c
Zbtb7b 1.364 Zbtb7b
Pou3f3 1.362 Pou3f3
Zbtb7a 1.356 Zbtb7a
Nr2e3 1.351 Nr2e3
Foxd1 1.348 Foxd1
Zfp219_Zfp740 1.345 Zfp219
Zfp740
Hmbox1 1.332 Hmbox1
Maff 1.332 Maff
Msx2_Hoxd4 1.331 Msx2
GGAAUGU 1.328 mmu-miR-1a-3p
mmu-miR-206-3p
mmu-miR-1957b
mmu-miR-6349
mmu-miR-6382
Hey2 1.321 Hey2
AAAGUGC 1.317 mmu-miR-17-5p
mmu-miR-20a-5p
mmu-miR-20b-5p
mmu-miR-93-5p
mmu-miR-106a-5p
mmu-miR-106b-5p
mmu-miR-6383
Hoxa6 1.315 Hoxa6
Nfatc1 1.314 Nfatc1
GAGGUAG 1.312 mmu-let-7a-5p
mmu-let-7b-5p
mmu-let-7c-5p
mmu-let-7d-5p
mmu-let-7e-5p
mmu-let-7f-5p
mmu-let-7g-5p
mmu-let-7i-5p
mmu-let-7k
mmu-miR-98-5p
mmu-miR-1961
Hmga2 1.311 Hmga2
Six4 1.308 Six4
Klf15 1.298 Klf15
Nkx3-2 1.290 Nkx3-2
Stat4_Stat3_Stat5b 1.283 Stat4
Stat3
Stat5b
Hsfy2 1.281 Hsfy2
Gsx2_Hoxd3_Vax1 1.278 Gsx2
Hoxd3
Vax1
Pou4f1_Pou6f1 1.277 Pou4f1
Pou6f1
Tlx1 1.277 Tlx1
Nr0b1 1.275 Nr0b1
Nkx2-2 1.270 Nkx2-2
Max_Mycn 1.264 Max
Mycn
Neurod1 1.260 Neurod1
Mzf1 1.256 Mzf1
Foxb1 1.254 Foxb1
Meis2 1.248 Meis2
Tead1 1.246 Tead1
Gcm2 1.246 Gcm2
Ahr 1.244 Ahr
Rhox4e_Rhox6_Vax2 1.243 Rhox4e
Rhox6
Vax2
GUGCAAA 1.242 mmu-miR-19a-3p
mmu-miR-19b-3p
Crx_Gsc 1.239 Crx
Gsc
Nfix 1.238 Nfix
Nr1i2 1.235 Nr1i2
Hmga1 1.234 Hmga1
Vsx1_Uncx_Prrx2_Shox2_Noto 1.230 Vsx1
Uncx
Prrx2
Shox2
Noto
Atf7_E4f1 1.226 Atf7
Atf7
E4f1
Zbtb12 1.225 Zbtb12
Nkx2-5 1.221 Nkx2-5
Zfp148 1.218 Zfp148
Hoxb7 1.208 Hoxb7
Zic2 1.205 Zic2
Hoxc10 1.203 Hoxc10
Gcm1 1.202 Gcm1
Hmx2 1.202 Hmx2
Sox1 1.199 Sox1
Emx1_Emx2 1.199 Emx1
Emx2
Rarb 1.198 Rarb
Lhx8 1.194 Lhx8
Ascl2 1.193 Ascl2
Gmeb2 1.190 Gmeb2
Zkscan3 1.186 Zkscan3
Zbtb49 1.185 Zbtb49
Zkscan1 1.176 Zkscan1
E2f3 1.174 E2f3
Atf1_Creb5 1.153 Atf1
Creb5
Obox1 1.152 Obox1
Arid3a 1.150 Arid3a
Onecut2_Onecut3 1.149 Onecut2
Onecut3
Nkx2-1 1.148 Nkx2-1
Tbx4 1.147 Tbx4
Foxc2 1.146 Foxc2
Sin3a 1.145 Sin3a
Pax7 1.141 Pax7
Hoxd12 1.133 Hoxd12
Rreb1 1.132 Rreb1
Otx1 1.132 Otx1
Pou6f2_Pou4f2 1.132 Pou6f2
Pou4f2
Zfp524 1.124 Zfp524
Plagl1 1.120 Plagl1
Tfap2b 1.119 Tfap2b
E2f6 1.116 E2f6
Runx3 1.109 Runx3
Nr6a1 1.105 Nr6a1
Sox30 1.099 Sox30
Gzf1 1.098 Gzf1
Mnt 1.095 Mnt
Glis2 1.093 Glis2
Nr2c1 1.089 Nr2c1
Sox21 1.086 Sox21
Prox1 1.079 Prox1
Gbx1_Nobox_Alx3 1.063 Gbx1
Nobox
Alx3
Cdx2 1.056 Cdx2
Gsc2_Dmbx1 1.056 Gsc2
Dmbx1
Pax3 1.056 Pax3
Irf5_Irf6 1.055 Irf5
Irf6
Zfp784 1.055 Zfp784
Tfap2a 1.052 Tfap2a
Hoxa5 1.052 Hoxa5
Gsx1_Alx1_Mixl1_Lbx2 1.051 Gsx1
Alx1
Mixl1
Lbx2
Esr2 1.050 Esr2
Scrt1 1.048 Scrt1
Klf7 1.047 Klf7
Sp100 1.038 Sp100
UGAAAUG 1.036 mmu-miR-203-3p.1
Mef2b 1.032 Mef2b
Mafa 1.029 Mafa
Phox2a 1.020 Phox2a
Tbr1 1.017 Tbr1
Smad4 1.016 Smad4
Lhx5_Lmx1b_Lhx1 1.016 Lhx5
Lmx1b
Lhx1
Irx5 1.015 Irx5
Nhlh1 1.014 Nhlh1
Hoxa9_Hoxb9 1.007 Hoxa9
Hoxb9
T 1.005 T
Crem_Jdp2 1.005 Crem
Jdp2
Nfe2l1_Mafg 1.004 Nfe2l1
Mafg
Mafg
UCCAGUU 1.002 mmu-miR-145a-5p
mmu-miR-145b
Pitx1 0.998 Pitx1
Stat1 0.996 Stat1
Stat5a 0.995 Stat5a
Tfap4 0.994 Tfap4
Nkx6-3_Dbx2_Barx2 0.993 Nkx6-3
Dbx2
Barx2
ACAUUCA 0.993 mmu-miR-181a-5p
mmu-miR-181b-5p
mmu-miR-181c-5p
mmu-miR-181d-5p
Mecom 0.989 Mecom
Smad3 0.985 Smad3
CACAGUG 0.984 mmu-miR-128-3p
mmu-miR-6539
Spdef 0.981 Spdef
Nkx2-6 0.981 Nkx2-6
Zfp652 0.979 Zfp652
Hoxb2_Dlx2 0.976 Hoxb2
Dlx2
AUGGCAC 0.970 mmu-miR-183-5p
Clock 0.969 Clock
Neurod2_Bhlha15_Bhlhe22_Olig1 0.968 Neurod2
Bhlha15
Bhlhe22
Olig1
Pou3f2 0.964 Pou3f2
Zfp691 0.961 Zfp691
Foxc1 0.958 Foxc1
Rela_Rel_Nfkb1 0.957 Rela
Rel
Nfkb1
Prrx1_Isx_Prrxl1 0.957 Prrx1
Isx
Prrxl1
Nfat5 0.956 Nfat5
Zic3 0.955 Zic3
ACAGUAU 0.947 mmu-miR-144-3p
Zbtb7c 0.945 Zbtb7c
Hes1 0.944 Hes1
Tbx1_Eomes 0.943 Tbx1
Eomes
Hoxa11_Hoxc12 0.943 Hoxa11
Hoxc12
Zfp384 0.943 Zfp384
Pou5f1 0.942 Pou5f1
Hlf 0.941 Hlf
Esrrb_Esrra 0.940 Esrrb
Esrra
Hivep1 0.929 Hivep1
Tcf21_Msc 0.929 Tcf21
Msc
Sox17 0.928 Sox17
Srf 0.928 Srf
Tcf7l1 0.928 Tcf7l1
Nfatc2 0.927 Nfatc2
Nr4a2 0.924 Nr4a2
Hoxb6 0.917 Hoxb6
Hoxd8 0.913 Hoxd8
Hoxb1 0.911 Hoxb1
AGUGCAA 0.909 mmu-miR-130a-3p
mmu-miR-130b-3p
mmu-miR-130c
mmu-miR-301a-3p
mmu-miR-301b-3p
mmu-miR-721
mmu-miR-6341
mmu-miR-6389
Ddit3 0.908 Ddit3
Foxl1 0.907 Foxl1
Foxl1
Sox7 0.900 Sox7
Figla 0.896 Figla
Zscan4c 0.894 Zscan4c
Foxp2_Foxp3 0.891 Foxp2
Foxp3
Foxq1 0.890 Foxq1
Sox15 0.889 Sox15
UAUUGCU 0.888 mmu-miR-137-3p
Rest 0.886 Rest
Glis3 0.884 Glis3
Glis3
Rfx2_Rfx7 0.882 Rfx2
Rfx7
Foxi1_Foxo1 0.882 Foxi1
Foxo1
Esrrg 0.881 Esrrg
Nkx2-3 0.876 Nkx2-3
Ep300 0.876 Ep300
Gtf2i_Gtf2f1 0.874 Gtf2i
Gtf2f1
Bsx 0.869 Bsx
Zfp128 0.868 Zfp128
Ppard 0.866 Ppard
Aire 0.866 Aire
Msx3 0.864 Msx3
Hoxb3 0.860 Hoxb3
Tgif2_Tgif2lx1_Tgif2lx2 0.856 Tgif2
Tgif2lx1
Tgif2lx2
CAGUGCA 0.848 mmu-miR-148a-3p
mmu-miR-148b-3p
mmu-miR-152-3p
Nkx2-4 0.848 Nkx2-4
Fubp1 0.839 Fubp1
GCAGCAU 0.838 mmu-miR-103-3p
mmu-miR-107-3p
UCACAGU 0.837 mmu-miR-27a-3p
mmu-miR-27b-3p
Xbp1_Creb3l1 0.831 Xbp1
Creb3l1
Thra 0.830 Thra
Gli1 0.827 Gli1
AAUACUG 0.817 mmu-miR-200b-3p
mmu-miR-200c-3p
mmu-miR-429-3p
Zbtb6 0.812 Zbtb6
Zfhx3 0.810 Zfhx3
Esr1 0.807 Esr1
Bhlhe40 0.807 Bhlhe40
Barhl2 0.805 Barhl2
Batf 0.804 Batf
Alx4 0.802 Alx4
AUUGCAC 0.802 mmu-miR-25-3p
mmu-miR-32-5p
mmu-miR-92a-3p
mmu-miR-92b-3p
mmu-miR-363-3p
mmu-miR-367-3p
Mbd2 0.800 Mbd2
Nfkb2 0.799 Nfkb2
Nkx2-9 0.798 Nkx2-9
Vdr 0.794 Vdr
Pou4f3 0.788 Pou4f3
Lef1 0.786 Lef1
Hoxc9 0.782 Hoxc9
AAUGCCC 0.782 mmu-miR-365-3p
Zfp263 0.775 Zfp263
Foxm1 0.773 Foxm1
Lhx3 0.772 Lhx3
Mnx1_Lhx6_Lmx1a 0.761 Mnx1
Lhx6
Lmx1a
Nr4a3 0.761 Nr4a3
Ctcfl_Ctcf 0.760 Ctcfl
Ctcf
Meox2 0.759 Meox2
Cenpb 0.751 Cenpb
Zfp410 0.751 Zfp410
AAGUGCU 0.750 mmu-miR-291a-3p
mmu-miR-294-3p
mmu-miR-295-3p
mmu-miR-302a-3p
mmu-miR-302b-3p
mmu-miR-302d-3p
Rfx3_Rfx1_Rfx4 0.749 Rfx3
Rfx1
Rfx4
GGAGUGU 0.749 mmu-miR-122-5p
Nkx6-1_Evx1_Hesx1 0.741 Nkx6-1
Evx1
Hesx1
AACACUG 0.740 mmu-miR-141-3p
mmu-miR-200a-3p
Msx1_Lhx9_Barx1_Rax_Dlx6 0.735 Msx1
Lhx9
Barx1
Rax
Dlx6
Cbfb 0.735 Cbfb
Klf13 0.731 Klf13
Zbtb3 0.723 Zbtb3
Hsf2 0.723 Hsf2
Sox6_Sox9 0.720 Sox6
Sox9
Sox5_Sry 0.715 Sox5
Sry
Hsf1 0.713 Hsf1
Foxg1 0.710 Foxg1
GCUGGUG 0.708 mmu-miR-138-5p
Trp63 0.707 Trp63
Nkx1-1_Nkx1-2 0.705 Nkx1-1
Nkx1-2
Six3_Six1_Six2 0.704 Six3
Six1
Six2
Batf3 0.702 Batf3
Gata6 0.696 Gata6
Rarg 0.690 Rarg
Hoxb4 0.689 Hoxb4
Rhox11 0.683 Rhox11
Obox3 0.683 Obox3
CCCUGAG 0.681 mmu-miR-125a-5p
mmu-miR-125b-5p
mmu-miR-351-5p
mmu-miR-6367
mmu-miR-6394
Nfe2l2 0.681 Nfe2l2
Rfx5 0.677 Rfx5
UUGGCAC 0.676 mmu-miR-96-5p
UCACAUU 0.676 mmu-miR-23a-3p
mmu-miR-23b-3p
Ikzf2 0.671 Ikzf2
ACAGUAC 0.671 mmu-miR-101a-3p.1
GGCAGUG 0.668 mmu-miR-34a-5p
mmu-miR-34b-5p
mmu-miR-34c-5p
mmu-miR-449a-5p
mmu-miR-449b
mmu-miR-449c-5p
CCUUCAU 0.662 mmu-miR-205-5p
Tfap2d 0.655 Tfap2d
Foxn1 0.653 Foxn1
Dlx5_Dlx4 0.653 Dlx5
Dlx4
Sox13 0.650 Sox13
Scrt2 0.643 Scrt2
Rora 0.642 Rora
Tbx15 0.639 Tbx15
UGCAUAG 0.636 mmu-miR-153-3p
Sox3_Sox10 0.629 Sox3
Sox10
CUUUGGU 0.627 mmu-miR-9-5p
Sox11 0.624 Sox11
Hoxd9 0.623 Hoxd9
Rxrb 0.621 Rxrb
Foxo3 0.617 Foxo3
Atf6 0.613 Atf6
Hoxc13_Hoxd13 0.608
Cdc5l 0.605 Cdc5l
Pknox2_Pknox1 0.605 Pknox2
Pknox1
Brca1 0.604 Brca1
Bcl6b 0.603 Bcl6b
Foxd2 0.600 Foxd2
GUAGUGU 0.600 mmu-miR-142a-3p.1
Pbx1_Pbx3 0.598 Pbx1
Pbx3
Hoxc6 0.597 Hoxc6
Trp73 0.596 Trp73
UGUGCUU 0.594 mmu-miR-218-5p
mmu-miR-7002-3p
Dbp 0.593 Dbp
Barhl1 0.591 Barhl1
Pax1_Pax9 0.589 Pax1
Pax9
Arid5b 0.587 Arid5b
Fosb 0.585 Fosb
UAAUGCU 0.582 mmu-miR-155-5p
Klf6_Patz1 0.581 Klf6
Patz1
Hoxd1 0.575 Hoxd1
CCAGUGU 0.575 mmu-miR-199a-5p
mmu-miR-199b-5p
AGCUGCC 0.566 mmu-miR-22-3p
Irx6_Irx2_Irx3 0.564 Irx6
Irx2
Irx3
Tlx2 0.563 Tlx2
Mef2c 0.560 Mef2c
Tbx3 0.559 Tbx3
GGCAAGA 0.553 mmu-miR-31-5p
Tfcp2l1 0.551 Tfcp2l1
Sp2 0.548 Sp2
Arid5a 0.546 Arid5a
UUGUUCG 0.543 mmu-miR-375-3p
Klf8 0.541 Klf8
GGCUCAG 0.540 mmu-miR-24-3p
mmu-miR-5124b
mmu-miR-6361
mmu-miR-6369
mmu-miR-6410
mmu-miR-6413
Meox1 0.538 Meox1
GUAACAG 0.531 mmu-miR-194-5p
Rbpj 0.527 Rbpj
Zic4 0.525 Zic4
ACUGCAU 0.510 mmu-miR-217-5p
Tfap2e 0.508 Tfap2e
Egr4 0.503 Egr4
Evx2 0.502 Evx2
AAGGUGC 0.496 mmu-miR-18a-5p
mmu-miR-18b-5p
Cxxc1 0.494 Cxxc1
GUCAGUU 0.490 mmu-miR-223-3p
Atf5 0.490 Atf5
Tbx20 0.486 Tbx20
Hoxa1 0.485 Hoxa1
Pax6 0.484 Pax6
AGUGGUU 0.477 mmu-miR-140-5p
mmu-miR-876-3p
Hoxc4_Arx_Otp_Esx1_Phox2b 0.476 Hoxc4
Arx
Otp
Esx1
Phox2b
Fosl2_Bach2 0.470 Fosl2
Bach2
Foxo4 0.460 Foxo4
ACUGGCC 0.460 mmu-miR-193a-3p
mmu-miR-193b-3p
AGCAGCG 0.460 mmu-miR-503-5p
Pax4 0.458 Pax4
UAAGACG 0.442 mmu-miR-208a-3p
mmu-miR-208b-3p
GAUUGUC 0.440 mmu-miR-219a-5p
Zfp423 0.439 Zfp423
Irx4 0.438 Irx4
Junb_Jund 0.437 Junb
Jund
Hoxa7_Hoxc8 0.433 Hoxa7
Hoxc8
Lhx4 0.433 Lhx4
Isl1 0.431 Isl1
AUGGCUU 0.430 mmu-miR-135a-5p
mmu-miR-135b-5p
Foxd3 0.428 Foxd3
Osr2_Osr1 0.415 Osr2
Osr1
Bbx 0.414 Bbx
Sox8 0.414 Sox8
ACCCUGU 0.412 mmu-miR-10a-5p
mmu-miR-10b-5p
AGCAGCA 0.398 mmu-miR-15a-5p
mmu-miR-15b-5p
mmu-miR-16-5p
mmu-miR-195a-5p
mmu-miR-195b
mmu-miR-322-5p
mmu-miR-497a-5p
mmu-miR-1907
mmu-miR-6342
mmu-miR-6353
mmu-miR-6419
Relb 0.397 Relb
Nfatc4 0.393 Nfatc4
Ovol1 0.388 Ovol1
Pax8 0.386 Pax8
GGAAGAC 0.369 mmu-miR-7a-5p
mmu-miR-7b-5p
Hoxa3 0.366 Hoxa3
Rorc_Nr1d1 0.360 Rorc
Nr1d1
Hmx3 0.344 Hmx3
Arnt2 0.336 Arnt2
GAUCAGA 0.331 mmu-miR-383-5p.1
Atoh1_Bhlhe23 0.326 Atoh1
Bhlhe23
AACAGUC 0.323 mmu-miR-132-3p
mmu-miR-212-3p
Gbx2 0.321 Gbx2
GCUACAU 0.321 mmu-miR-221-3p
mmu-miR-222-3p
mmu-miR-1928
Hoxd10 0.318 Hoxd10
Smad2 0.314 Smad2
Irf4 0.311 Irf4
Zfp105 0.308 Zfp105
Nr3c2 0.308 Nr3c2
UGCAUUG 0.303 mmu-miR-33-5p
UAAGACU 0.281 mmu-miR-499-5p
Ehf 0.264 Ehf
Hlx 0.260 Hlx
GAUAUGU 0.244 mmu-miR-190a-5p
mmu-miR-190b-5p
GAGAUGA 0.236 mmu-miR-143-3p
Prdm4 0.234 Prdm4
AUGUGCC 0.233 mmu-miR-455-5p
mmu-miR-5129-3p
UCCCUUU 0.227 mmu-miR-204-5p
mmu-miR-211-5p
mmu-miR-7670-3p
Glis1 0.211 Glis1
UGACCUA 0.210 mmu-miR-192-5p
mmu-miR-215-5p
AGCUUAU 0.202 mmu-miR-21a-5p
mmu-miR-21c
mmu-miR-590-5p
CCAGCAU 0.159 mmu-miR-338-3p
AAUCUCU 0.159 mmu-miR-216b-5p
GAGAACU 0.148 mmu-miR-146a-5p
mmu-miR-146b-5p
Klf3 0.147 Klf3
UGUGCGU 0.115 mmu-miR-210-3p
AACCUGG 0.101 mmu-miR-490-3p
AACGGAA 0.100 mmu-miR-191-5p
CGUGUCU 0.092 mmu-miR-187-3p
AUGACAC 0.068 mmu-miR-425-5p
mmu-miR-489-3p
CUACAGU 0.058 mmu-miR-139-5p
AAUCUCA 0.039 mmu-miR-216a-5p
AACCGUU 0.033 mmu-miR-451a
GGACGGA 0.016 mmu-miR-184-3p
CUCCCAA 0.005 mmu-miR-150-5p
mmu-miR-5127

All samples sorted alphabetically


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Sample name Condition Replicate/Batch
Day_-2
Day_0
Day_1
Day_3
Day_5
Day_10
Day_!5
Day_20
Day_25
Day_30
Day_45
Day_60