ISMARA results for ENCODE cell lines, H3K27me3 (Ernst 2011)
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
All motifs sorted by activity significance
| Motif name | Z-value | Associated genes | Profile | Logo |
|---|---|---|---|---|
| RREB1.p2 | 6.512 |
RREB1
(HNT)
|
|
|
| NRF1.p2 | 6.358 |
NRF1
(EWG, ALPHA-PAL)
|
|
|
| ELK1,4_GABP{A,B1}.p3 | 5.144 |
GABPA
(E4TF1A, NFT2, NRF2, E4TF1-60, NRF2A)
GABPB1 (E4TF1-47, GABPB) ELK4 (SAP1) ELK1 |
|
|
| ZNF143.p2 | 4.800 |
ZNF143
(SBF, pHZ-1, STAF)
|
|
|
| HIC1.p2 | 4.741 |
HIC1
(ZBTB29)
|
|
|
| PITX1..3.p2 | 4.731 |
PITX2
(IGDS, RS, Brx1, Otlx2, ARP1)
PITX3 PITX1 (PTX1, POTX) |
|
|
| SNAI1..3.p2 | 4.449 |
SNAI2
(SLUGH1)
SNAI1 (SNA, SLUGH2, SNAH) SNAI3 (SMUC, Zfp293) |
|
|
| YY1.p2 | 4.260 |
YY1
(NF-E1, DELTA, UCRBP, YIN-YANG-1, INO80S)
|
|
|
| REST.p3 | 4.186 |
REST
(NRSF, XBR)
|
|
|
| TFCP2.p2 | 3.943 |
TFCP2
(CP2, LSF, LBP-1C, TFCP2C)
|
|
|
| TFAP2{A,C}.p2 | 3.538 |
TFAP2C
(AP2-GAMMA, ERF1, TFAP2G, hAP-2g)
TFAP2A (AP-2) |
|
|
| EHF.p2 | 3.377 |
EHF
|
|
|
| FOS_FOS{B,L1}_JUN{B,D}.p2 | 3.341 |
FOS
(c-fos, AP-1)
JUNB FOSL1 (fra-1) JUND (AP-1) FOSB (G0S3, GOSB, GOS3, AP-1, MGC42291, DKFZp686C0818) |
|
|
| HMGA1,2.p2 | 3.308 |
HMGA1
HMGA2 (BABL, LIPO) |
|
|
| MZF1.p2 | 3.295 |
MZF1
(MZF1B, ZSCAN6, MZF-1, Zfp98)
|
|
|
| ZEB1.p2 | 3.291 |
ZEB1
(BZP, ZEB, AREB6, NIL-2-A, Zfhep, Zfhx1a)
|
|
|
| MTF1.p2 | 3.273 |
MTF1
|
|
|
| TFAP2B.p2 | 3.265 |
TFAP2B
(AP2-B)
|
|
|
| AHR_ARNT_ARNT2.p2 | 3.219 |
ARNT
(HIF-1beta, bHLHe2)
AHR ARNT2 (KIAA0307, bHLHe1) |
|
|
| HOX{A6,A7,B6,B7}.p2 | 3.075 |
HOXB6
HOXA7 HOXB7 HOXA6 |
|
|
| KLF12.p2 | 3.030 |
KLF12
(AP-2rep, HSPC122, AP2REP)
|
|
|
| EBF1.p2 | 3.018 |
EBF1
(OLF1)
|
|
|
| MAZ.p2 | 2.957 |
MAZ
(ZF87, Pur-1, Zif87, ZNF801)
|
|
|
| PAX5.p2 | 2.903 |
PAX5
(BSAP)
|
|
|
| ZIC1..3.p2 | 2.847 |
ZIC1
(ZIC, ZNF201)
ZIC2 (HPE5) ZIC3 (HTX, ZNF203) |
|
|
| MYFfamily.p2 | 2.796 |
MYOD1
(PUM, MYOD, bHLHc1)
MYF6 (MRF4, bHLHc4) MYF5 (bHLHc2) MYOG (bHLHc3) |
|
|
| PRRX1,2.p2 | 2.654 |
PRRX2
(PRX2, PMX2)
PRRX1 (PHOX1) |
|
|
| NFY{A,B,C}.p2 | 2.647 |
NFYC
(CBF-C)
NFYB (CBF-A, HAP3) NFYA (HAP2, CBF-B) |
|
|
| TEAD1.p2 | 2.635 |
TEAD1
(TEF-1)
TEAD2 (ETF, TEF4, TEF-4, TEAD-2) TEAD3 (TEF5, TEAD5, TEF-5, DTEF-1, ETFR-1, TEAD-3) TEAD4 (TEF3, RTEF1, TEF-3, EFTR-2, TEFR-1, TCF13L1, hRTEF-1B) |
|
|
| ELF1,2,4.p2 | 2.603 |
ELF2
(EU32, NERF, NERF-2, NERF-1A, NERF-1B)
ELF1 ELF4 (MEF, ELFR) |
|
|
| ZNF384.p2 | 2.595 |
ZNF384
(CAGH1A, CIZ, NMP4, NP)
|
|
|
| SP1.p2 | 2.588 |
SP1
|
|
|
| CREB1.p2 | 2.561 |
CREB1
|
|
|
| ZNF423.p2 | 2.537 |
ZNF423
(KIAA0760, OAZ, Roaz, Ebfaz, Zfp104)
|
|
|
| CRX.p2 | 2.508 |
CRX
(CRD, LCA7, OTX3)
|
|
|
| IRF1,2,7.p3 | 2.504 |
IRF1
(MAR, IRF-1)
IRF2 (IRF-2, DKFZp686F0244) IRF7 (IRF7A, IRF-7H) |
|
|
| HMX1.p2 | 2.498 |
HMX1
(H6, NKX5-3)
|
|
|
| SMAD1..7,9.p2 | 2.496 |
SMAD5
(Dwfc, JV5-1)
SMAD1 (MADR1, JV4-1) SMAD3 (JV15-2, HsT17436) SMAD4 (DPC4) SMAD2 (MADR2, JV18-1) SMAD6 (HsT17432) SMAD7 SMAD9 |
|
|
| GATA1..3.p2 | 2.466 |
GATA1
(ERYF1, NFE1)
GATA2 (NFE1B) GATA3 (HDR) |
|
|
| MYOD1.p2 | 2.463 |
MYOD1
(PUM, MYOD, bHLHc1)
|
|
|
| NFE2L1.p2 | 2.433 |
NFE2L1
(NRF1, LCR-F1, FLJ00380, TCF11)
|
|
|
| HNF4A_NR2F1,2.p2 | 2.425 |
NR2F1
(EAR-3, COUP-TFI, TCFCOUP1, SVP44)
NR2F2 (COUP-TFII, COUPTFB, SVP40) HNF4A (NR2A1, HNF4) |
|
|
| TFDP1.p2 | 2.409 |
TFDP1
(Dp-1, DRTF1, DP1)
|
|
|
| UGUGCUU | 2.373 | hsa-miR-218 |
|
|
| GTF2I.p2 | 2.355 |
GTF2I
(TFII-I, BAP-135, SPIN, BTKAP1, DIWS, IB291)
|
|
|
| NHLH1,2.p2 | 2.338 |
NHLH1
(NSCL, NSCL1, bHLHa35)
NHLH2 (NSCL2, bHLHa34) |
|
|
| TLX1..3_NFIC{dimer}.p2 | 2.336 |
TLX1
TLX3 (RNX) |
|
|
| KLF4.p3 | 2.278 |
KLF4
(EZF, GKLF)
|
|
|
| EN1,2.p2 | 2.262 |
EN1
EN2 |
|
|
| MAFB.p2 | 2.204 |
MAFB
|
|
|
| EP300.p2 | 2.194 |
EP300
(p300, KAT3B)
|
|
|
| AAGGCAC | 2.187 | hsa-miR-124 hsa-miR-506 |
|
|
| RUNX1..3.p2 | 2.179 |
RUNX1
(PEBP2A2, AMLCR1)
RUNX3 (AML2, PEBP2A3) RUNX2 (AML3, PEBP2A1, PEBP2aA1) |
|
|
| EGR1..3.p2 | 2.179 |
EGR3
(PILOT)
EGR1 (TIS8, G0S30, NGFI-A, KROX-24, ZIF-268, AT225, ZNF225) EGR2 |
|
|
| HBP1_HMGB_SSRP1_UBTF.p2 | 2.163 |
HMGB2
HMGB3 (HMG2A, MGC90319) SSRP1 (FACT80) UBTF (UBF, NOR-90) HBP1 |
|
|
| IKZF2.p2 | 2.157 |
IKZF2
(Helios)
|
|
|
| ATF5_CREB3.p2 | 2.150 |
ATF5
CREB3 (LZIP, Luman) |
|
|
| HLF.p2 | 2.146 |
HLF
(MGC33822)
|
|
|
| BPTF.p2 | 2.136 |
BPTF
(FAC1, NURF301)
|
|
|
| TCF4_dimer.p2 | 2.135 |
TCF4
(E2-2, ITF2, PTHS, SEF2, SEF2-1, SEF2-1A, SEF2-1B, bHLHb19, MGC149723, MGC149724)
|
|
|
| ESR1.p2 | 2.091 |
ESR1
(NR3A1, Era)
|
|
|
| FOX{D1,D2}.p2 | 2.085 |
FOXD2
(FREAC9)
FOXD1 (FREAC4) |
|
|
| bHLH_family.p2 | 2.081 |
ARNTL
(MOP3, JAP3, BMAL1, PASD3, bHLHe5)
MITF (WS2A, MI, bHLHe32) MXI1 (MXD2, MAD2, MXI, bHLHc11) TFE3 (TFEA, bHLHe33) CLOCK (KIAA0334, KAT13D, bHLHe8) OLIG2 (RACK17, OLIGO2, bHLHe19) MXD4 (MAD4, MSTP149, MST149, bHLHc12) HEY2 (bHLHb32) HEY1 (HESR-1, CHF2, HESR1, HRT-1, CHF-2, HERP2, BHLHb31) HEYL (bHLHb33) MLXIPL (WS-bHLH, MIO, CHREBP, MONDOB) HES6 (bHLHc23) MXD3 (MAD3, bHLHc13) ARNTL2 (BMAL2, MOP9, CLIF, PASD9, bHLHe6) ID1 (dJ857M17.1.2, bHLHb24) MNT (ROX, MXD6, MAD6, bHLHd3) OLIG1 (BHLHB6, bHLHe21) NPAS2 (MOP4, PASD4, bHLHe9) |
|
|
| ETS1,2.p2 | 2.079 |
ETS2
ETS1 (FLJ10768, ETS-1) |
|
|
| SPI1.p2 | 2.075 |
SPI1
(PU.1, SPI-A, OF, SFPI1, SPI-1)
|
|
|
| TFAP4.p2 | 2.049 |
TFAP4
(AP-4)
|
|
|
| NFATC1..3.p2 | 2.035 |
NFATC3
(NFAT4, NFATX)
NFATC2 (NF-ATP, NFATp, NFAT1) NFATC1 (NF-ATC, NFATc, NFAT2) |
|
|
| NR5A1,2.p2 | 1.981 |
NR5A1
(FTZ1, SF-1, ELP, AD4BP)
NR5A2 (FTZ-F1beta, hB1F, LRH-1, FTZ-F1, hB1F-2, B1F2) |
|
|
| DBP.p2 | 1.978 |
DBP
(DABP)
|
|
|
| UCAAGUA | 1.959 | hsa-miR-26a hsa-miR-26b hsa-miR-1297 hsa-miR-4465 |
|
|
| E2F1..5.p2 | 1.949 |
E2F4
(E2F-4)
E2F5 E2F2 (E2F-2) E2F1 (RBP3) E2F3 |
|
|
| TBP.p2 | 1.925 |
TBP
(TFIID)
|
|
|
| RXR{A,B,G}.p2 | 1.902 |
RXRA
(NR2B1)
RXRB (NR2B2, H-2RIIBP, RCoR-1) RXRG (NR2B3) |
|
|
| HAND1,2.p2 | 1.881 |
HAND1
(eHand, Thing1, Hxt, bHLHa27)
HAND2 (dHand, Thing2, Hed, bHLHa26) |
|
|
| CAGCAGG | 1.871 | hsa-miR-214 hsa-miR-761 hsa-miR-3619-5p |
|
|
| SRY.p2 | 1.850 |
SRY
(TDF)
|
|
|
| ONECUT1,2.p2 | 1.845 |
ONECUT2
(OC-2)
ONECUT1 (HNF-6) |
|
|
| ZFP161.p2 | 1.843 |
ZFP161
(ZNF478, ZBTB14)
|
|
|
| MYB.p2 | 1.835 |
MYB
(c-myb)
|
|
|
| PAX2.p2 | 1.831 |
PAX2
|
|
|
| ZBTB16.p2 | 1.819 |
ZBTB16
(PLZF)
|
|
|
| SRF.p3 | 1.809 |
SRF
(MCM1)
|
|
|
| AAUACUG | 1.798 | hsa-miR-200b hsa-miR-200c hsa-miR-429 |
|
|
| EVI1.p2 | 1.774 |
EVI1
(MDS1-EVI1, PRDM3)
|
|
|
| STAT2,4,6.p2 | 1.767 |
STAT2
(STAT113)
STAT4 STAT6 (D12S1644, IL-4-STAT) |
|
|
| CDX1,2,4.p2 | 1.737 |
CDX1
CDX2 CDX4 |
|
|
| UUUUUGC | 1.736 | hsa-miR-129-5p |
|
|
| POU1F1.p2 | 1.730 |
POU1F1
(GHF-1)
|
|
|
| SOX5.p2 | 1.721 |
SOX5
(L-SOX5, MGC35153)
|
|
|
| ATF2.p2 | 1.695 |
ATF2
(TREB7, CRE-BP1, HB16)
|
|
|
| SPZ1.p2 | 1.657 |
SPZ1
(NYD-TSP1, FLJ25709)
|
|
|
| FOXL1.p2 | 1.639 |
FOXL1
(FREAC7, FKH6)
|
|
|
| ZNF148.p2 | 1.637 |
ZNF148
(BERF-1, ZBP-89, BFCOL1, HT-BETA, ZFP148, pHZ-52)
|
|
|
| UGAAAUG | 1.632 | hsa-miR-203 |
|
|
| POU5F1_SOX2{dimer}.p2 | 1.628 |
POU5F1
(OCT3, Oct4, MGC22487)
SOX2 |
|
|
| NR3C1.p2 | 1.627 |
NR3C1
(GR)
|
|
|
| RFX1..5_RFXANK_RFXAP.p2 | 1.623 |
RFX1
(EF-C)
RFXAP RFX5 RFXANK (BLS, RFX-B, ANKRA1, F14150_1, MGC138628) RFX4 RFX3 RFX2 (FLJ14226) |
|
|
| POU5F1.p2 | 1.622 |
POU5F1
(OCT3, Oct4, MGC22487)
|
|
|
| CTCF.p2 | 1.595 |
CTCF
|
|
|
| AAAGUGC | 1.582 | hsa-miR-17 hsa-miR-20a hsa-miR-20b hsa-miR-93 hsa-miR-106a hsa-miR-106b hsa-miR-519d |
|
|
| NKX3-2.p2 | 1.571 |
NKX3-2
(NKX3B, NKX3.2)
|
|
|
| FOXN1.p2 | 1.560 |
FOXN1
(FKHL20)
|
|
|
| ZBTB6.p2 | 1.552 |
ZBTB6
(ZID)
|
|
|
| ESRRA.p2 | 1.546 |
ESRRA
(ERR1, ERRalpha, NR3B1, ERRa)
|
|
|
| CCAGUGU | 1.539 | hsa-miR-199a-5p hsa-miR-199b-5p |
|
|
| BACH2.p2 | 1.503 |
BACH2
|
|
|
| SPIB.p2 | 1.493 |
SPIB
(SPI-B)
|
|
|
| GUAGUGU | 1.484 | hsa-miR-142-3p |
|
|
| EOMES.p2 | 1.480 |
EOMES
(TBR2)
|
|
|
| TBX4,5.p2 | 1.480 |
TBX5
TBX4 |
|
|
| CEBPA,B_DDIT3.p2 | 1.480 |
DDIT3
(CHOP10, GADD153, CHOP)
CEBPA (C/EBP-alpha) CEBPB (LAP, CRP2, NFIL6, IL6DBP) |
|
|
| ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2 | 1.460 |
ARNT
(HIF-1beta, bHLHe2)
MAX (bHLHd4) MYC (c-Myc, bHLHe39) USF1 (UEF, MLTFI, bHLHb11) BHLHB2 (DEC1, bHLHe40) ARNT2 (KIAA0307, bHLHe1) |
|
|
| TGIF1.p2 | 1.445 |
TGIF1
|
|
|
| GATA6.p2 | 1.445 |
GATA6
|
|
|
| GUAAACA | 1.443 | hsa-miR-30a hsa-miR-30b hsa-miR-30c hsa-miR-30d hsa-miR-30e |
|
|
| NFKB1_REL_RELA.p2 | 1.440 |
RELA
(p65)
REL (I-Rel) NFKB1 (KBF1, p105) |
|
|
| AGCAGCG | 1.438 | hsa-miR-503 |
|
|
| SOX2.p2 | 1.430 |
SOX2
|
|
|
| GLI1..3.p2 | 1.430 |
GLI1
GLI2 (THP2, HPE9, THP1) GLI3 (PAP-A, PAPA, PAPA1, PAPB, ACLS, PPDIV) |
|
|
| FOXO1,3,4.p2 | 1.428 |
FOXO1
(FKH1)
FOXO4 (AFX1) FOXO3 (AF6q21, FOXO2) |
|
|
| FOXA2.p3 | 1.412 |
FOXA2
|
|
|
| TLX2.p2 | 1.399 |
TLX2
(Enx, Tlx2, NCX)
|
|
|
| CUCCCAA | 1.397 | hsa-miR-150 |
|
|
| NR1H4.p2 | 1.385 |
NR1H4
(FXR, RIP14, HRR1, HRR-1)
|
|
|
| HSF1,2.p2 | 1.376 |
HSF1
(HSTF1)
HSF2 |
|
|
| GGCAGUG | 1.364 | hsa-miR-34a hsa-miR-34c-5p hsa-miR-449a hsa-miR-449b |
|
|
| NKX3-1.p2 | 1.364 |
NKX3-1
(NKX3.1, BAPX2)
|
|
|
| LMO2.p2 | 1.355 |
LMO2
(TTG2, RHOM2, RBTN2)
|
|
|
| NKX2-2,8.p2 | 1.351 |
NKX2-2
(NKX2.2)
NKX2-8 (NKX2.8, Nkx2-9) |
|
|
| ADNP_IRX_SIX_ZHX.p2 | 1.348 |
SIX5
ZHX1 IRX4 ADNP (KIAA0784, ADNP1) ZHX3 (KIAA0395) ZHX2 (KIAA0854) IRX5 (IRX-2a) SIX2 |
|
|
| STAT5{A,B}.p2 | 1.340 |
STAT5B
STAT5A (MGF) |
|
|
| MEF2{A,B,C,D}.p2 | 1.335 |
MEF2A
(RSRFC4, RSRFC9)
MEF2C MEF2D MEF2BNB-MEF2B (MEF2B, LOC729991-MEF2B) MEF2B (RSRFR2, FLJ32648) |
|
|
| GTF2A1,2.p2 | 1.330 |
GTF2A1
(TFIIA)
GTF2A2 (TFIIA, HsT18745) |
|
|
| HOX{A4,D4}.p2 | 1.330 |
HOXA4
HOXD4 |
|
|
| POU3F1..4.p2 | 1.313 |
POU3F1
(OCT6, SCIP)
POU3F3 (BRN1, OTF8) POU3F2 (POUF3, BRN2, OCT7) POU3F4 (BRN4, OTF9) |
|
|
| EWSR1-FLI1.p2 | 1.311 |
FLI1
(EWSR2, SIC-1)
EWSR1 (EWS, K984G1.4) |
|
|
| PRDM1.p3 | 1.311 |
PRDM1
(PRDI-BF1)
|
|
|
| HIF1A.p2 | 1.303 |
HIF1A
(MOP1, HIF-1alpha, PASD8, HIF1)
|
|
|
| PAX4.p2 | 1.300 |
PAX4
|
|
|
| GFI1B.p2 | 1.299 |
GFI1B
|
|
|
| FOXD3.p2 | 1.271 |
FOXD3
(Genesis, HFH2)
|
|
|
| UAUUGCU | 1.270 | hsa-miR-137 |
|
|
| FOXP3.p2 | 1.264 |
FOXP3
(JM2, XPID, AIID, PIDX, DIETER, SCURFIN)
|
|
|
| ARID5B.p2 | 1.260 |
ARID5B
(FLJ21150, MRF2)
|
|
|
| MYBL2.p2 | 1.258 |
MYBL2
(BMYB, B-MYB)
|
|
|
| HOX{A5,B5}.p2 | 1.231 |
HOXB5
HOXA5 |
|
|
| NFE2L2.p2 | 1.228 |
NFE2L2
(NRF2)
|
|
|
| CDC5L.p2 | 1.224 |
CDC5L
(PCDC5RP, hCDC5, CEF1)
|
|
|
| UGCAUAG | 1.221 | hsa-miR-153 |
|
|
| GFI1.p2 | 1.221 |
GFI1
|
|
|
| GAGGUAG | 1.213 | hsa-let-7a hsa-let-7b hsa-let-7c hsa-let-7d hsa-let-7e hsa-let-7f hsa-let-7g hsa-let-7i hsa-miR-98 hsa-miR-4458 hsa-miR-4500 |
|
|
| AGGUAGU | 1.211 | hsa-miR-196a hsa-miR-196b |
|
|
| UCCAGUU | 1.210 | hsa-miR-145 |
|
|
| HNF1A.p2 | 1.197 |
HNF1A
(HNF1, LFB1)
|
|
|
| TP53.p2 | 1.195 |
TP53
(p53, LFS1)
|
|
|
| AGCAGCA | 1.195 | hsa-miR-15a hsa-miR-15b hsa-miR-16 hsa-miR-195 hsa-miR-424 hsa-miR-497 |
|
|
| GGCUCAG | 1.193 | hsa-miR-24 |
|
|
| UUGGCAA | 1.182 | hsa-miR-182 |
|
|
| XBP1.p3 | 1.165 |
XBP1
|
|
|
| PATZ1.p2 | 1.154 |
PATZ1
(MAZR, dJ400N23, ZBTB19, ZSG, RIAZ, PATZ)
|
|
|
| CUUUGGU | 1.152 | hsa-miR-9 |
|
|
| NFIL3.p2 | 1.151 |
NFIL3
(E4BP4, NFIL3A, NF-IL3A)
|
|
|
| AGCUGCC | 1.137 | hsa-miR-22 |
|
|
| HES1.p2 | 1.128 |
HES1
(FLJ20408, HES-1, Hes1, bHLHb39)
|
|
|
| UUGUUCG | 1.116 | hsa-miR-375 |
|
|
| GUGCAAA | 1.115 | hsa-miR-19a hsa-miR-19b |
|
|
| AGCACCA | 1.109 | hsa-miR-29a hsa-miR-29b hsa-miR-29c |
|
|
| AUUGCAC | 1.104 | hsa-miR-25 hsa-miR-32 hsa-miR-92a hsa-miR-92b hsa-miR-363 hsa-miR-367 |
|
|
| ATF4.p2 | 1.099 |
ATF4
(TAXREB67, CREB-2)
|
|
|
| ACAUUCA | 1.098 | hsa-miR-181a hsa-miR-181b hsa-miR-181c hsa-miR-181d hsa-miR-4262 |
|
|
| RXRG_dimer.p3 | 1.093 |
NR1H2
(NER, NER-I, RIP15, LXR-b)
RXRA (NR2B1) PPARG (PPARG1, PPARG2, NR1C3, PPARgamma) PPARA (hPPAR, NR1C1) RXRB (NR2B2, H-2RIIBP, RCoR-1) RXRG (NR2B3) |
|
|
| PBX1.p2 | 1.083 |
PBX1
|
|
|
| FOXQ1.p2 | 1.082 |
FOXQ1
(HFH1)
|
|
|
| LHX3,4.p2 | 1.075 |
LHX3
LHX4 (Gsh4) |
|
|
| DMAP1_NCOR{1,2}_SMARC.p2 | 1.072 |
SMARCA1
(SNF2LB, NURF140, ISWI, SWI)
SMARCC2 (BAF170, Rsc8, CRACC2) SMARCA5 (hSNF2H, hISWI, ISWI) NCOR1 (N-CoR, hCIT529I10, TRAC1, hN-CoR, KIAA1047, MGC104216) NCOR2 (SMRT, SMRTE, TRAC-1, CTG26, TNRC14) DMAP1 (DNMAP1, FLJ11543, KIAA1425, DNMTAP1, EAF2, SWC4) |
|
|
| NANOG{mouse}.p2 | 1.067 |
NANOG
(FLJ12581, FLJ40451)
|
|
|
| AUGGCUU | 1.050 | hsa-miR-135a hsa-miR-135b |
|
|
| AAGGUGC | 1.048 | hsa-miR-18a hsa-miR-18b hsa-miR-4735-3p |
|
|
| SOX17.p2 | 1.048 |
SOX17
|
|
|
| POU6F1.p2 | 1.044 |
POU6F1
(BRN5, MPOU, TCFB1)
|
|
|
| AIRE.p2 | 1.041 |
AIRE
(PGA1, APS1)
|
|
|
| LEF1_TCF7_TCF7L1,2.p2 | 1.035 |
TCF7
(TCF-1)
TCF7L2 (TCF-4) LEF1 (TCF1ALPHA) TCF7L1 |
|
|
| ZNF238.p2 | 1.031 |
ZNF238
(C2H2-171, TAZ-1, RP58, ZBTB18)
|
|
|
| FOSL2.p2 | 1.028 |
FOSL2
(FRA2, FLJ23306)
|
|
|
| AR.p2 | 1.020 |
AR
(AIS, NR3C4, SMAX1, HUMARA)
|
|
|
| GAUUGUC | 1.019 | hsa-miR-219-5p hsa-miR-4782-3p |
|
|
| NKX6-1,2.p2 | 1.019 |
NKX6-1
(Nkx6.1)
NKX6-2 (NKX6B, GTX, NKX6.1) |
|
|
| IKZF1.p2 | 1.018 |
IKZF1
(hIk-1, LyF-1, Hs.54452, IKAROS)
|
|
|
| AGUGGUU | 1.010 | hsa-miR-140-5p |
|
|
| GGAAUGU | 1.008 | hsa-miR-1 hsa-miR-206 hsa-miR-613 |
|
|
| SOX{8,9,10}.p2 | 1.003 |
SOX9
(SRA1)
SOX8 SOX10 (DOM, WS4, WS2E) |
|
|
| NKX2-3_NKX2-5.p2 | 1.003 |
NKX2-5
(CSX1, NKX2.5, NKX4-1)
NKX2-3 (NKX2.3, CSX3, NKX4-3) |
|
|
| JUN.p2 | 0.982 |
JUN
(c-Jun, AP-1)
JUND (AP-1) JUNB |
|
|
| CACAGUG | 0.981 | hsa-miR-128 |
|
|
| ACAGUAC | 0.978 | hsa-miR-101 |
|
|
| NFIX.p2 | 0.962 |
NFIX
(NF1A)
|
|
|
| FOX{F1,F2,J1}.p2 | 0.962 |
FOXF2
(FREAC2)
FOXJ1 (HFH-4, HFH4) FOXF1 (FREAC1) |
|
|
| POU2F1..3.p2 | 0.957 |
POU2F2
(OCT2)
POU2F1 (OCT1) POU2F3 (OCT11, PLA-1, Skn-1a, Epoc-1) |
|
|
| FOX{I1,J2}.p2 | 0.954 |
FOXI1
(FREAC6)
FOXJ2 (FHX) |
|
|
| GCUACAU | 0.954 | hsa-miR-221 hsa-miR-222 |
|
|
| AGCUUAU | 0.949 | hsa-miR-21 hsa-miR-590-5p |
|
|
| RXRA_VDR{dimer}.p2 | 0.943 |
VDR
(NR1I1)
|
|
|
| UCACAUU | 0.942 | hsa-miR-23a hsa-miR-23b hsa-miR-23c |
|
|
| NANOG.p2 | 0.937 |
NANOG
(FLJ12581, FLJ40451)
|
|
|
| AACACUG | 0.929 | hsa-miR-141 hsa-miR-200a |
|
|
| ALX1.p2 | 0.925 |
ALX1
|
|
|
| NFE2.p2 | 0.922 |
NFE2
(NF-E2)
|
|
|
| TAL1_TCF{3,4,12}.p2 | 0.912 |
TCF3
(E2A, ITF1, MGC129647, MGC129648, bHLHb21)
TCF4 (SEF2-1B, ITF2, bHLHb19) TAL1 (SCL, bHLHa17) TCF12 (HEB, HTF4, HsT17266, bHLHb20) |
|
|
| FEV.p2 | 0.910 |
FEV
(PET-1, HSRNAFEV)
|
|
|
| SREBF1,2.p2 | 0.896 |
SREBF1
(SREBP1, bHLHd1)
SREBF2 (SREBP2, bHLHd2) |
|
|
| CCCUGAG | 0.880 | hsa-miR-125a-5p hsa-miR-125b hsa-miR-4319 |
|
|
| CAGUGCA | 0.876 | hsa-miR-148a hsa-miR-148b hsa-miR-152 |
|
|
| PPARG.p2 | 0.876 |
PPARG
(PPARG1, PPARG2, NR1C3, PPARgamma)
|
|
|
| NKX2-1,4.p2 | 0.876 |
NKX2-1
(TTF-1)
NKX2-4 (NKX2.4) |
|
|
| ATF6.p2 | 0.865 |
ATF6
(ATF6A)
|
|
|
| UUGGUCC | 0.857 | hsa-miR-133a hsa-miR-133b |
|
|
| GUCAGUU | 0.852 | hsa-miR-223 |
|
|
| GCAGCAU | 0.837 | hsa-miR-103a hsa-miR-107 |
|
|
| UCACAGU | 0.830 | hsa-miR-27a hsa-miR-27b |
|
|
| FOX{C1,C2}.p2 | 0.785 |
FOXC1
(FREAC3, ARA, IGDA, IHG1)
FOXC2 (MFH-1) |
|
|
| T.p2 | 0.782 |
T
|
|
|
| TFEB.p2 | 0.770 |
TFEB
|
|
|
| AAGUGCU | 0.769 | hsa-miR-302a hsa-miR-302b hsa-miR-302c hsa-miR-302d hsa-miR-302e hsa-miR-372 hsa-miR-373 hsa-miR-520a-3p hsa-miR-520b hsa-miR-520c-3p hsa-miR-520d-3p hsa-miR-520e |
|
|
| UCCCUUU | 0.763 | hsa-miR-204 hsa-miR-211 |
|
|
| GCUGGUG | 0.762 | hsa-miR-138 |
|
|
| CCUUCAU | 0.739 | hsa-miR-205 |
|
|
| UGCAUUG | 0.731 | hsa-miR-33a hsa-miR-33b |
|
|
| AGUGCAA | 0.725 | hsa-miR-130a hsa-miR-130b hsa-miR-301a hsa-miR-301b hsa-miR-454 hsa-miR-3666 hsa-miR-4295 |
|
|
| AAUGCCC | 0.717 | hsa-miR-365 |
|
|
| MSX1,2.p2 | 0.703 |
MSX1
(HYD1, OFC5)
MSX2 (CRS2, FPP, HOX8, MSH, PFM) |
|
|
| AACAGUC | 0.702 | hsa-miR-132 hsa-miR-212 |
|
|
| GAGAUGA | 0.696 | hsa-miR-143 hsa-miR-4770 |
|
|
| AUGUGCC | 0.673 | hsa-miR-455-5p |
|
|
| GGAAGAC | 0.665 | hsa-miR-7 |
|
|
| NR6A1.p2 | 0.664 |
NR6A1
(GCNF1, RTR)
|
|
|
| ACCCUGU | 0.664 | hsa-miR-10a hsa-miR-10b |
|
|
| GGCAAGA | 0.657 | hsa-miR-31 |
|
|
| UUGGCAC | 0.654 | hsa-miR-96 hsa-miR-1271 |
|
|
| AUGGCAC | 0.646 | hsa-miR-183 |
|
|
| RBPJ.p2 | 0.639 |
RBPJ
(SUH, IGKJRB, RBPJK, KBF2, RBP-J, CBF1)
|
|
|
| HOXA9_MEIS1.p2 | 0.635 |
MEIS1
HOXA9 |
|
|
| ACAGUAU | 0.629 | hsa-miR-144 |
|
|
| PDX1.p2 | 0.629 |
PDX1
(IDX-1, STF-1, PDX-1, MODY4)
|
|
|
| STAT1,3.p3 | 0.629 |
STAT1
(STAT91, ISGF-3)
STAT3 (APRF) |
|
|
| CCAGCAU | 0.627 | hsa-miR-338-3p |
|
|
| RORA.p2 | 0.616 |
RORA
(RZRA, ROR1, ROR2, ROR3, NR1F1)
|
|
|
| GUAACAG | 0.600 | hsa-miR-194 |
|
|
| CUX2.p2 | 0.598 |
CUX2
(KIAA0293, CDP2)
|
|
|
| UAAUGCU | 0.597 | hsa-miR-155 |
|
|
| UAAGACG | 0.580 | hsa-miR-208a hsa-miR-208b |
|
|
| PAX6.p2 | 0.579 |
PAX6
(D11S812E, AN, WAGR)
|
|
|
| UAAGACU | 0.538 | hsa-miR-499-5p |
|
|
| GAGAACU | 0.532 | hsa-miR-146a hsa-miR-146b-5p |
|
|
| CUACAGU | 0.527 | hsa-miR-139-5p |
|
|
| CGUGUCU | 0.495 | hsa-miR-187 |
|
|
| AUGACAC | 0.493 | hsa-miR-425 |
|
|
| GAUAUGU | 0.461 | hsa-miR-190 hsa-miR-190b |
|
|
| AAUCUCU | 0.408 | hsa-miR-216b |
|
|
| VSX1,2.p2 | 0.403 |
VSX2
(RET1)
VSX1 (PPD) |
|
|
| AACGGAA | 0.395 | hsa-miR-191 |
|
|
| GAUCAGA | 0.391 | hsa-miR-383 |
|
|
| AAUCUCA | 0.361 | hsa-miR-216a |
|
|
| AACCUGG | 0.348 | hsa-miR-490-3p |
|
|
| UGUGCGU | 0.314 | hsa-miR-210 |
|
|
| GGACGGA | 0.293 | hsa-miR-184 |
|
|
| ACUGGCC | 0.289 | hsa-miR-193a-3p hsa-miR-193b |
|
|
| GZF1.p2 | 0.277 |
GZF1
(dJ322G13.2, ZBTB23)
|
|
|
| CGUACCG | 0.273 | hsa-miR-126 |
|
|
| ACUGCAU | 0.272 | hsa-miR-217 |
|
|
| GGAGUGU | 0.261 | hsa-miR-122 |
|
|
| PAX3,7.p2 | 0.183 |
PAX7
(Hup1)
PAX3 (HUP2) |
|
|
| UGACCUA | 0.176 | hsa-miR-192 hsa-miR-215 |
|
|
| AACCGUU | 0.143 | hsa-miR-451 |
|
|
| PAX8.p2 | 0.134 |
PAX8
|
|
|
| ACCCGUA | 0.023 | hsa-miR-99a hsa-miR-99b hsa-miR-100 |
|
|
All samples sorted alphabetically
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