MARA results: cerebellum, embryo E16, biol

Sample name: cerebellum, embryo E16, biol_rep1 (E16R1)

Sorted Z-values histogram for the sample cerebellum, embryo E16, biol_rep1 (E16R1)

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
RFX1..5_RFXANK_RFXAP.p2	6.528	Rfx1 Rfxap Rfx5 Rfxank Rfx4 Rfx3 Rfx2
REST.p3	5.547	Rest
UGUGCUU	4.113
SNAI1..3.p2	4.088	Snai2 Snai1 Snai3
HOX{A6,A7,B6,B7}.p2	4.006	Hoxb6 Hoxa7 Hoxb7 Hoxa6
ESRRA.p2	3.996	Esrra
EGR1..3.p2	3.457	Egr3 Egr1 Egr2
KLF12.p2	3.124	Klf12
MAFB.p2	2.828	Mafb
MYFfamily.p2	2.697	Myod1 Myf6 Myf5 Myog
ZBTB16.p2	2.453	Zbtb16
ZNF423.p2	2.445	Zfp423
MZF1.p2	2.423	Mzf1
EWSR1-FLI1.p2	2.378	Fli1 Ewsr1
AHR_ARNT_ARNT2.p2	2.354	Arnt Ahr Arnt2
GGCAGUG	2.347
GTF2I.p2	2.203	Gtf2i
JUN.p2	2.092	Jun Jund Junb
ZFP161.p2	2.058	Zfp161
MTF1.p2	2.020	Mtf1
ZEB1.p2	1.954	Zeb1
NFIX.p2	1.881	Nfix
ACAUUCA	1.822
SPZ1.p2	1.816	Spz1
ETS1,2.p2	1.814	Ets2 Ets1
GLI1..3.p2	1.774	Gli1 Gli2 Gli3
CAGCAGG	1.760
EVI1.p2	1.758	Mecom
NKX3-2.p2	1.708	Nkx3-2
UAUUGCU	1.700
UUGGCAC	1.664
ATF5_CREB3.p2	1.662	Atf5 Creb3
DBP.p2	1.642	Dbp
AAAGUGC	1.617
TBX4,5.p2	1.606	Tbx5 Tbx4
KLF4.p3	1.428	Klf4
NKX3-1.p2	1.418	Nkx3-1
SRF.p3	1.386	Srf
HOX{A4,D4}.p2	1.353	Hoxa4 Hoxd4
POU5F1.p2	1.328	Pou5f1
SRY.p2	1.327	Sry
ACAGUAC	1.318
NFE2.p2	1.265	Nfe2
ZBTB6.p2	1.156	Zbtb6
ACCCUGU	1.129
GGAAGAC	1.124
NFE2L2.p2	1.095	Nfe2l2
HIC1.p2	1.038	Hic1
RXRA_VDR{dimer}.p2	1.025	Vdr	$logo of RXRA_VDR{dimer}.p2$
T.p2	0.948	T
HMX1.p2	0.946	Hmx1
GCAGCAU	0.931
SMAD1..7,9.p2	0.923	Smad5 Smad1 Smad3 Smad4 Smad2 Smad6 Smad7 Smad9
FOX{F1,F2,J1}.p2	0.894	Foxf2 Foxj1 Foxf1a
SPIB.p2	0.873	Spib
GAUUGUC	0.845
GCUGGUG	0.835
UUGGCAA	0.818
UGCAUUG	0.797
UCACAGU	0.788
AACAGUC	0.784
AUUGCAC	0.780
CUCCCAA	0.744
UGCAUAG	0.734
ATF6.p2	0.722	Atf6
HOX{A5,B5}.p2	0.693	Hoxb5 Hoxa5
AUGGCUU	0.691
HBP1_HMGB_SSRP1_UBTF.p2	0.690	Hmgb2 Hmgb3 Ssrp1 Ubtf Hbp1
TCF4_dimer.p2	0.690	Tcf4
GFI1B.p2	0.682	Gfi1b
NKX2-2,8.p2	0.663	Nkx2-2 Nkx2-9
PAX5.p2	0.656	Pax5
CUACAGU	0.646
PAX2.p2	0.642	Pax2
POU6F1.p2	0.640	Pou6f1
TAL1_TCF{3,4,12}.p2	0.631	Tcf3 Tcf4 Tal1 Tcf12	$logo of TAL1_TCF{3,4,12}.p2$
NHLH1,2.p2	0.625	Nhlh1 Nhlh2
FOXL1.p2	0.620	Foxl1
SOX2.p2	0.619	Sox2
EBF1.p2	0.608	Ebf1
CDX1,2,4.p2	0.591	Cdx1 Cdx2 Cdx4
UGAAAUG	0.569
TGIF1.p2	0.562	Tgif1
GGCUCAG	0.555
AGCAGCG	0.549
IKZF1.p2	0.532	Ikzf1
DMAP1_NCOR{1,2}_SMARC.p2	0.495	Smarca1 Smarcc2 Smarca5 Ncor1 Ncor2 Dmap1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
FOXQ1.p2	0.487	Foxq1
PRRX1,2.p2	0.483	Prrx2 Prrx1
UAAGACG	0.478
ZNF143.p2	0.468	Zfp143
EN1,2.p2	0.437	En1 En2
AUGACAC	0.428
CAGUGCA	0.427
UAAGACU	0.425
AACACUG	0.424
EP300.p2	0.418	Ep300
NKX2-1,4.p2	0.417	Nkx2-1 Nkx2-4
CCUUCAU	0.402
AAUCUCU	0.397
GAGAACU	0.371
MEF2{A,B,C,D}.p2	0.353	Mef2a Mef2c Mef2d Mef2b
FOS_FOS{B,L1}_JUN{B,D}.p2	0.351	Fos Junb Fosl1 Jund Fosb	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
ZNF148.p2	0.344	Zfp148
UUUUUGC	0.336
AGGUAGU	0.326
ESR1.p2	0.326	Esr1
GATA1..3.p2	0.323	Gata1 Gata2 Gata3
TBP.p2	0.322	Tbp
FOXP3.p2	0.320	Foxp3
CGUGUCU	0.287
LMO2.p2	0.285	Lmo2
AIRE.p2	0.271	Aire
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	0.265	Arnt Max Myc Usf1 Bhlhe40 Arnt2
CTCF.p2	0.261	Ctcf
MYOD1.p2	0.256	Myod1
ACUGCAU	0.249
TFAP4.p2	0.245	Tcfap4
TP53.p2	0.239	Trp53
AACGGAA	0.236
GZF1.p2	0.230	Gzf1
GAUCAGA	0.210
FOX{I1,J2}.p2	0.191	Foxi1 Foxj2
SREBF1,2.p2	0.190	Srebf1 Srebf2
UCCCUUU	0.170
AGCACCA	0.159
GAUAUGU	0.145
AAGGUGC	0.138
TFEB.p2	0.135	Tcfeb
CCAGCAU	0.124
RORA.p2	0.117	Rora
GGACGGA	0.115
MYB.p2	0.115	Myb
VSX1,2.p2	0.110	Vsx2 Vsx1
MSX1,2.p2	0.108	Msx1 Msx2
GUGCAAA	0.104
HOXA9_MEIS1.p2	0.087	Meis1 Hoxa9
PAX4.p2	0.087	Pax4
UGACCUA	0.080
PAX8.p2	0.078	Pax8
FOXN1.p2	0.075	Foxn1
ALX1.p2	0.068	Alx1
PDX1.p2	0.067	Pdx1
AACCUGG	0.064
HLF.p2	0.043	Hlf
BACH2.p2	0.032	Bach2
GTF2A1,2.p2	0.028	Gtf2a1 Gtf2a2
UUGUUCG	0.026
AAUCUCA	0.025
STAT1,3.p3	0.013	Stat1 Stat3
GUCAGUU	0.004
AACCGUU	0.002
ACCCGUA	-0.019
AAUGCCC	-0.023
PAX3,7.p2	-0.025	Pax7 Pax3
CUX2.p2	-0.032	Cux2
AGUGGUU	-0.037
GGAGUGU	-0.038
GUAAACA	-0.044
ACUGGCC	-0.047
TFAP2B.p2	-0.050	Tcfap2b
AAGUGCU	-0.053
AGCUGCC	-0.055
STAT5{A,B}.p2	-0.083	Stat5b Stat5a
CGUACCG	-0.102
HAND1,2.p2	-0.109	Hand1 Hand2
GGCAAGA	-0.140
POU3F1..4.p2	-0.175	Pou3f1 Pou3f3 Pou3f2 Pou3f4
ZNF238.p2	-0.184	Zfp238
CACAGUG	-0.184
RXR{A,B,G}.p2	-0.184	Rxra Rxrb Rxrg
GCUACAU	-0.194
UGUGCGU	-0.199
GAGAUGA	-0.200
ZIC1..3.p2	-0.204	Zic1 Zic2 Zic3
UCCAGUU	-0.213
ARID5B.p2	-0.220	Arid5b
UCACAUU	-0.222
UUGGUCC	-0.222
GGAAUGU	-0.226
PAX6.p2	-0.226	Pax6
AR.p2	-0.245	Ar
UAAUGCU	-0.251
PPARG.p2	-0.252	Pparg
AGCAGCA	-0.273
NANOG.p2	-0.277	Nanog
LHX3,4.p2	-0.305	Lhx3 Lhx4
NKX6-1,2.p2	-0.310	Nkx6-1 Nkx6-2
MYBL2.p2	-0.312	Mybl2
NR5A1,2.p2	-0.313	Nr5a1 Nr5a2
TLX1..3_NFIC{dimer}.p2	-0.315	Tlx1 Tlx3	$logo of TLX1..3_NFIC{dimer}.p2$
AUGGCAC	-0.323
NFE2L1.p2	-0.336	Nfe2l1
NRF1.p2	-0.379	Nrf1
CCAGUGU	-0.402
ATF2.p2	-0.426	Atf2
XBP1.p3	-0.447	Xbp1
AAUACUG	-0.470
RUNX1..3.p2	-0.477	Runx1 Runx3 Runx2
POU1F1.p2	-0.489	Pou1f1
RXRG_dimer.p3	-0.500	Nr1h2 Rxra Pparg Ppara Rxrb Rxrg
EOMES.p2	-0.502	Eomes
PATZ1.p2	-0.516	Patz1
NKX2-3_NKX2-5.p2	-0.520	Nkx2-5 Nkx2-3
CRX.p2	-0.521	Crx
RREB1.p2	-0.528	Rreb1
IKZF2.p2	-0.529	Ikzf2
NR6A1.p2	-0.563	Nr6a1
ONECUT1,2.p2	-0.594	Onecut2 Onecut1
HES1.p2	-0.603	Hes1
CDC5L.p2	-0.633	Cdc5l
SOX5.p2	-0.658	Sox5
ACAGUAU	-0.666
PBX1.p2	-0.681	Pbx1
UCAAGUA	-0.692
FOSL2.p2	-0.698	Fosl2
FOXO1,3,4.p2	-0.703	Foxo1 Foxo4 Foxo3
GAGGUAG	-0.736
FOXD3.p2	-0.739	Foxd3
CREB1.p2	-0.750	Creb1
POU5F1_SOX2{dimer}.p2	-0.769	Pou5f1 Sox2	$logo of POU5F1_SOX2{dimer}.p2$
FEV.p2	-0.784	Fev
NANOG{mouse}.p2	-0.802	Nanog
AGCUUAU	-0.848
SP1.p2	-0.862	Sp1
HMGA1,2.p2	-0.866	Hmga1 Hmga2
CEBPA,B_DDIT3.p2	-0.886	Ddit3 Cebpa Cebpb
TFCP2.p2	-0.895	Tcfcp2
EHF.p2	-0.918	Ehf
AGUGCAA	-0.922
NFATC1..3.p2	-0.925	Nfatc3 Nfatc2 Nfatc1
MAZ.p2	-0.941	Maz
TLX2.p2	-0.961	Tlx2
GUAACAG	-1.048
FOX{C1,C2}.p2	-1.078	Foxc1 Foxc2
NR3C1.p2	-1.087	Nr3c1
RBPJ.p2	-1.088	Rbpj
bHLH_family.p2	-1.132	Arntl Mitf Mxi1 Tcfe3 Clock Olig2 Mxd4 Hey2 Hey1 Heyl Mlxipl Hes6 Mxd3 Arntl2 Id1 Mnt Olig1 Npas2
SOX17.p2	-1.147	Sox17
HNF1A.p2	-1.177	Hnf1a
PRDM1.p3	-1.185	Prdm1
SOX{8,9,10}.p2	-1.220	Sox9 Sox8 Sox10
HSF1,2.p2	-1.243	Hsf1 Hsf2
GUAGUGU	-1.354
NFIL3.p2	-1.364	Nfil3
FOX{D1,D2}.p2	-1.418	Foxd2 Foxd1
BPTF.p2	-1.474	Bptf
LEF1_TCF7_TCF7L1,2.p2	-1.625	Tcf7 Tcf7l2 Lef1 Tcf7l1
ZNF384.p2	-1.806	Zfp384
NFKB1_REL_RELA.p2	-1.876	Rela Rel Nfkb1
ADNP_IRX_SIX_ZHX.p2	-1.898	Six5 Zhx1 Irx4 Adnp Zhx3 Zhx2 Irx5 Six2
HIF1A.p2	-1.917	Hif1a
ATF4.p2	-2.019	Atf4
TFDP1.p2	-2.127	Tfdp1
NR1H4.p2	-2.161	Nr1h4
PITX1..3.p2	-2.193	Pitx2 Pitx3 Pitx1
IRF1,2,7.p3	-2.230	Irf1 Irf2 Irf7
CUUUGGU	-2.276
TFAP2{A,C}.p2	-2.289	Tcfap2c Tcfap2a
FOXA2.p3	-2.323	Foxa2
STAT2,4,6.p2	-2.369	Stat2 Stat4 Stat6
TEAD1.p2	-2.427	Tead1 Tead2 Tead3 Tead4
CCCUGAG	-2.435
GATA6.p2	-2.507	Gata6
SPI1.p2	-2.573	Sfpi1
POU2F1..3.p2	-2.598	Pou2f2 Pou2f1 Pou2f3
YY1.p2	-2.615	Yy1
ELK1,4_GABP{A,B1}.p3	-2.997	Gabpa Gabpb1 Elk4 Elk1	$logo of ELK1,4_GABP{A,B1}.p3$
HNF4A_NR2F1,2.p2	-3.377	Nr2f1 Nr2f2 Hnf4a
GFI1.p2	-3.506	Gfi1
ELF1,2,4.p2	-3.611	Elf2 Elf1 Elf4
AAGGCAC	-3.871
NFY{A,B,C}.p2	-5.061	Nfyc Nfyb Nfya
E2F1..5.p2	-5.424	E2f4 E2f5 E2f2 E2f1 E2f3

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Sample name: cerebellum, embryo E16, biol_rep1 (E16R1)

Sorted z-values for every WM.