ISMARA results for ENCODE cell lines, H3K27ac (Ernst 2011)

ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.

All motifs sorted by activity significance

Motif name Z-value Associated genes Profile Logo
RFX1..5_RFXANK_RFXAP.p2 9.208 RFX1 (EF-C)
RFXAP
RFX5
RFXANK (BLS, RFX-B, ANKRA1, F14150_1, MGC138628)
RFX4
RFX3
RFX2 (FLJ14226)
SNAI1..3.p2 7.676 SNAI2 (SLUGH1)
SNAI1 (SNA, SLUGH2, SNAH)
SNAI3 (SMUC, Zfp293)
HNF1A.p2 7.107 HNF1A (HNF1, LFB1)
FOS_FOS{B,L1}_JUN{B,D}.p2 6.825 FOS (c-fos, AP-1)
JUNB
FOSL1 (fra-1)
JUND (AP-1)
FOSB (G0S3, GOSB, GOS3, AP-1, MGC42291, DKFZp686C0818)
HNF4A_NR2F1,2.p2 6.783 NR2F1 (EAR-3, COUP-TFI, TCFCOUP1, SVP44)
NR2F2 (COUP-TFII, COUPTFB, SVP40)
HNF4A (NR2A1, HNF4)
IRF1,2,7.p3 6.758 IRF1 (MAR, IRF-1)
IRF2 (IRF-2, DKFZp686F0244)
IRF7 (IRF7A, IRF-7H)
TFAP2{A,C}.p2 6.569 TFAP2C (AP2-GAMMA, ERF1, TFAP2G, hAP-2g)
TFAP2A (AP-2)
HIC1.p2 6.021 HIC1 (ZBTB29)
TEAD1.p2 5.678 TEAD1 (TEF-1)
TEAD2 (ETF, TEF4, TEF-4, TEAD-2)
TEAD3 (TEF5, TEAD5, TEF-5, DTEF-1, ETFR-1, TEAD-3)
TEAD4 (TEF3, RTEF1, TEF-3, EFTR-2, TEFR-1, TCF13L1, hRTEF-1B)
NFKB1_REL_RELA.p2 4.919 RELA (p65)
REL (I-Rel)
NFKB1 (KBF1, p105)
PITX1..3.p2 4.851 PITX2 (IGDS, RS, Brx1, Otlx2, ARP1)
PITX3
PITX1 (PTX1, POTX)
TFAP2B.p2 4.823 TFAP2B (AP2-B)
NRF1.p2 4.817 NRF1 (EWG, ALPHA-PAL)
EHF.p2 4.708 EHF
NFY{A,B,C}.p2 4.432 NFYC (CBF-C)
NFYB (CBF-A, HAP3)
NFYA (HAP2, CBF-B)
SPIB.p2 4.429 SPIB (SPI-B)
ATF5_CREB3.p2 4.250 ATF5
CREB3 (LZIP, Luman)
PAX5.p2 4.214 PAX5 (BSAP)
GATA6.p2 4.199 GATA6
RUNX1..3.p2 4.163 RUNX1 (PEBP2A2, AMLCR1)
RUNX3 (AML2, PEBP2A3)
RUNX2 (AML3, PEBP2A1, PEBP2aA1)
ZNF143.p2 4.122 ZNF143 (SBF, pHZ-1, STAF)
ELK1,4_GABP{A,B1}.p3 4.011 GABPA (E4TF1A, NFT2, NRF2, E4TF1-60, NRF2A)
GABPB1 (E4TF1-47, GABPB)
ELK4 (SAP1)
ELK1
SPI1.p2 4.009 SPI1 (PU.1, SPI-A, OF, SFPI1, SPI-1)
MYOD1.p2 3.979 MYOD1 (PUM, MYOD, bHLHc1)
YY1.p2 3.927 YY1 (NF-E1, DELTA, UCRBP, YIN-YANG-1, INO80S)
TCF4_dimer.p2 3.927 TCF4 (E2-2, ITF2, PTHS, SEF2, SEF2-1, SEF2-1A, SEF2-1B, bHLHb19, MGC149723, MGC149724)
TFCP2.p2 3.827 TFCP2 (CP2, LSF, LBP-1C, TFCP2C)
KLF4.p3 3.719 KLF4 (EZF, GKLF)
ZEB1.p2 3.702 ZEB1 (BZP, ZEB, AREB6, NIL-2-A, Zfhep, Zfhx1a)
E2F1..5.p2 3.694 E2F4 (E2F-4)
E2F5
E2F2 (E2F-2)
E2F1 (RBP3)
E2F3
NHLH1,2.p2 3.458 NHLH1 (NSCL, NSCL1, bHLHa35)
NHLH2 (NSCL2, bHLHa34)
TLX1..3_NFIC{dimer}.p2 3.440 TLX1
TLX3 (RNX)
MZF1.p2 3.296 MZF1 (MZF1B, ZSCAN6, MZF-1, Zfp98)
ESRRA.p2 3.193 ESRRA (ERR1, ERRalpha, NR3B1, ERRa)
EP300.p2 3.190 EP300 (p300, KAT3B)
MYB.p2 3.171 MYB (c-myb)
TFDP1.p2 3.137 TFDP1 (Dp-1, DRTF1, DP1)
HBP1_HMGB_SSRP1_UBTF.p2 3.131 HMGB2
HMGB3 (HMG2A, MGC90319)
SSRP1 (FACT80)
UBTF (UBF, NOR-90)
HBP1
KLF12.p2 3.068 KLF12 (AP-2rep, HSPC122, AP2REP)
RREB1.p2 3.053 RREB1 (HNT)
PRRX1,2.p2 3.009 PRRX2 (PRX2, PMX2)
PRRX1 (PHOX1)
FEV.p2 2.954 FEV (PET-1, HSRNAFEV)
MTF1.p2 2.928 MTF1
RXR{A,B,G}.p2 2.912 RXRA (NR2B1)
RXRB (NR2B2, H-2RIIBP, RCoR-1)
RXRG (NR2B3)
HOX{A6,A7,B6,B7}.p2 2.907 HOXB6
HOXA7
HOXB7
HOXA6
FOXA2.p3 2.829 FOXA2
HLF.p2 2.757 HLF (MGC33822)
MAZ.p2 2.740 MAZ (ZF87, Pur-1, Zif87, ZNF801)
ELF1,2,4.p2 2.718 ELF2 (EU32, NERF, NERF-2, NERF-1A, NERF-1B)
ELF1
ELF4 (MEF, ELFR)
ETS1,2.p2 2.644 ETS2
ETS1 (FLJ10768, ETS-1)
MAFB.p2 2.605 MAFB
SRF.p3 2.599 SRF (MCM1)
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2 2.599 ARNT (HIF-1beta, bHLHe2)
MAX (bHLHd4)
MYC (c-Myc, bHLHe39)
USF1 (UEF, MLTFI, bHLHb11)
BHLHB2 (DEC1, bHLHe40)
ARNT2 (KIAA0307, bHLHe1)
ZNF384.p2 2.587 ZNF384 (CAGH1A, CIZ, NMP4, NP)
DMAP1_NCOR{1,2}_SMARC.p2 2.555 SMARCA1 (SNF2LB, NURF140, ISWI, SWI)
SMARCC2 (BAF170, Rsc8, CRACC2)
SMARCA5 (hSNF2H, hISWI, ISWI)
NCOR1 (N-CoR, hCIT529I10, TRAC1, hN-CoR, KIAA1047, MGC104216)
NCOR2 (SMRT, SMRTE, TRAC-1, CTG26, TNRC14)
DMAP1 (DNMAP1, FLJ11543, KIAA1425, DNMTAP1, EAF2, SWC4)
XBP1.p3 2.547 XBP1
ATF6.p2 2.544 ATF6 (ATF6A)
PRDM1.p3 2.537 PRDM1 (PRDI-BF1)
NFATC1..3.p2 2.523 NFATC3 (NFAT4, NFATX)
NFATC2 (NF-ATP, NFATp, NFAT1)
NFATC1 (NF-ATC, NFATc, NFAT2)
EN1,2.p2 2.515 EN1
EN2
bHLH_family.p2 2.499 ARNTL (MOP3, JAP3, BMAL1, PASD3, bHLHe5)
MITF (WS2A, MI, bHLHe32)
MXI1 (MXD2, MAD2, MXI, bHLHc11)
TFE3 (TFEA, bHLHe33)
CLOCK (KIAA0334, KAT13D, bHLHe8)
OLIG2 (RACK17, OLIGO2, bHLHe19)
MXD4 (MAD4, MSTP149, MST149, bHLHc12)
HEY2 (bHLHb32)
HEY1 (HESR-1, CHF2, HESR1, HRT-1, CHF-2, HERP2, BHLHb31)
HEYL (bHLHb33)
MLXIPL (WS-bHLH, MIO, CHREBP, MONDOB)
HES6 (bHLHc23)
MXD3 (MAD3, bHLHc13)
ARNTL2 (BMAL2, MOP9, CLIF, PASD9, bHLHe6)
ID1 (dJ857M17.1.2, bHLHb24)
MNT (ROX, MXD6, MAD6, bHLHd3)
OLIG1 (BHLHB6, bHLHe21)
NPAS2 (MOP4, PASD4, bHLHe9)
TFAP4.p2 2.486 TFAP4 (AP-4)
GATA1..3.p2 2.454 GATA1 (ERYF1, NFE1)
GATA2 (NFE1B)
GATA3 (HDR)
NFE2L2.p2 2.436 NFE2L2 (NRF2)
PATZ1.p2 2.418 PATZ1 (MAZR, dJ400N23, ZBTB19, ZSG, RIAZ, PATZ)
FOX{D1,D2}.p2 2.345 FOXD2 (FREAC9)
FOXD1 (FREAC4)
LEF1_TCF7_TCF7L1,2.p2 2.329 TCF7 (TCF-1)
TCF7L2 (TCF-4)
LEF1 (TCF1ALPHA)
TCF7L1
ESR1.p2 2.321 ESR1 (NR3A1, Era)
NKX3-2.p2 2.301 NKX3-2 (NKX3B, NKX3.2)
POU2F1..3.p2 2.273 POU2F2 (OCT2)
POU2F1 (OCT1)
POU2F3 (OCT11, PLA-1, Skn-1a, Epoc-1)
HES1.p2 2.254 HES1 (FLJ20408, HES-1, Hes1, bHLHb39)
GFI1B.p2 2.238 GFI1B
ZIC1..3.p2 2.176 ZIC1 (ZIC, ZNF201)
ZIC2 (HPE5)
ZIC3 (HTX, ZNF203)
LMO2.p2 2.145 LMO2 (TTG2, RHOM2, RBTN2)
STAT5{A,B}.p2 2.138 STAT5B
STAT5A (MGF)
EBF1.p2 2.091 EBF1 (OLF1)
ONECUT1,2.p2 2.044 ONECUT2 (OC-2)
ONECUT1 (HNF-6)
DBP.p2 2.042 DBP (DABP)
EGR1..3.p2 2.033 EGR3 (PILOT)
EGR1 (TIS8, G0S30, NGFI-A, KROX-24, ZIF-268, AT225, ZNF225)
EGR2
SP1.p2 2.023 SP1
NFIX.p2 2.014 NFIX (NF1A)
HAND1,2.p2 1.989 HAND1 (eHand, Thing1, Hxt, bHLHa27)
HAND2 (dHand, Thing2, Hed, bHLHa26)
MEF2{A,B,C,D}.p2 1.958 MEF2A (RSRFC4, RSRFC9)
MEF2C
MEF2D
MEF2BNB-MEF2B (MEF2B, LOC729991-MEF2B)
MEF2B (RSRFR2, FLJ32648)
ZNF423.p2 1.947 ZNF423 (KIAA0760, OAZ, Roaz, Ebfaz, Zfp104)
TBP.p2 1.945 TBP (TFIID)
PAX2.p2 1.927 PAX2
FOX{I1,J2}.p2 1.912 FOXI1 (FREAC6)
FOXJ2 (FHX)
STAT2,4,6.p2 1.905 STAT2 (STAT113)
STAT4
STAT6 (D12S1644, IL-4-STAT)
TFEB.p2 1.899 TFEB
JUN.p2 1.898 JUN (c-Jun, AP-1)
JUND (AP-1)
JUNB
NR5A1,2.p2 1.896 NR5A1 (FTZ1, SF-1, ELP, AD4BP)
NR5A2 (FTZ-F1beta, hB1F, LRH-1, FTZ-F1, hB1F-2, B1F2)
NFE2L1.p2 1.877 NFE2L1 (NRF1, LCR-F1, FLJ00380, TCF11)
ZNF238.p2 1.871 ZNF238 (C2H2-171, TAZ-1, RP58, ZBTB18)
HIF1A.p2 1.867 HIF1A (MOP1, HIF-1alpha, PASD8, HIF1)
ATF4.p2 1.857 ATF4 (TAXREB67, CREB-2)
ZFP161.p2 1.853 ZFP161 (ZNF478, ZBTB14)
TGIF1.p2 1.844 TGIF1
CTCF.p2 1.832 CTCF
CREB1.p2 1.808 CREB1
GFI1.p2 1.778 GFI1
CEBPA,B_DDIT3.p2 1.764 DDIT3 (CHOP10, GADD153, CHOP)
CEBPA (C/EBP-alpha)
CEBPB (LAP, CRP2, NFIL6, IL6DBP)
MSX1,2.p2 1.753 MSX1 (HYD1, OFC5)
MSX2 (CRS2, FPP, HOX8, MSH, PFM)
GTF2I.p2 1.746 GTF2I (TFII-I, BAP-135, SPIN, BTKAP1, DIWS, IB291)
ZNF148.p2 1.694 ZNF148 (BERF-1, ZBP-89, BFCOL1, HT-BETA, ZFP148, pHZ-52)
SOX{8,9,10}.p2 1.687 SOX9 (SRA1)
SOX8
SOX10 (DOM, WS4, WS2E)
SMAD1..7,9.p2 1.684 SMAD5 (Dwfc, JV5-1)
SMAD1 (MADR1, JV4-1)
SMAD3 (JV15-2, HsT17436)
SMAD4 (DPC4)
SMAD2 (MADR2, JV18-1)
SMAD6 (HsT17432)
SMAD7
SMAD9
CRX.p2 1.682 CRX (CRD, LCA7, OTX3)
MYFfamily.p2 1.645 MYOD1 (PUM, MYOD, bHLHc1)
MYF6 (MRF4, bHLHc4)
MYF5 (bHLHc2)
MYOG (bHLHc3)
SRY.p2 1.605 SRY (TDF)
NKX2-2,8.p2 1.598 NKX2-2 (NKX2.2)
NKX2-8 (NKX2.8, Nkx2-9)
SOX17.p2 1.583 SOX17
HMGA1,2.p2 1.580 HMGA1
HMGA2 (BABL, LIPO)
FOXL1.p2 1.572 FOXL1 (FREAC7, FKH6)
FOXO1,3,4.p2 1.571 FOXO1 (FKH1)
FOXO4 (AFX1)
FOXO3 (AF6q21, FOXO2)
GTF2A1,2.p2 1.565 GTF2A1 (TFIIA)
GTF2A2 (TFIIA, HsT18745)
PBX1.p2 1.557 PBX1
FOXQ1.p2 1.516 FOXQ1 (HFH1)
TBX4,5.p2 1.516 TBX5
TBX4
IKZF1.p2 1.512 IKZF1 (hIk-1, LyF-1, Hs.54452, IKAROS)
FOSL2.p2 1.510 FOSL2 (FRA2, FLJ23306)
BPTF.p2 1.501 BPTF (FAC1, NURF301)
RBPJ.p2 1.500 RBPJ (SUH, IGKJRB, RBPJK, KBF2, RBP-J, CBF1)
IKZF2.p2 1.494 IKZF2 (Helios)
FOXN1.p2 1.485 FOXN1 (FKHL20)
BACH2.p2 1.479 BACH2
RXRA_VDR{dimer}.p2 1.468 VDR (NR1I1)
NFE2.p2 1.467 NFE2 (NF-E2)
PAX4.p2 1.465 PAX4
NR1H4.p2 1.456 NR1H4 (FXR, RIP14, HRR1, HRR-1)
RXRG_dimer.p3 1.414 NR1H2 (NER, NER-I, RIP15, LXR-b)
RXRA (NR2B1)
PPARG (PPARG1, PPARG2, NR1C3, PPARgamma)
PPARA (hPPAR, NR1C1)
RXRB (NR2B2, H-2RIIBP, RCoR-1)
RXRG (NR2B3)
FOX{F1,F2,J1}.p2 1.400 FOXF2 (FREAC2)
FOXJ1 (HFH-4, HFH4)
FOXF1 (FREAC1)
HOXA9_MEIS1.p2 1.366 MEIS1
HOXA9
AHR_ARNT_ARNT2.p2 1.355 ARNT (HIF-1beta, bHLHe2)
AHR
ARNT2 (KIAA0307, bHLHe1)
POU5F1.p2 1.354 POU5F1 (OCT3, Oct4, MGC22487)
HOX{A4,D4}.p2 1.340 HOXA4
HOXD4
POU3F1..4.p2 1.329 POU3F1 (OCT6, SCIP)
POU3F3 (BRN1, OTF8)
POU3F2 (POUF3, BRN2, OCT7)
POU3F4 (BRN4, OTF9)
ZBTB16.p2 1.324 ZBTB16 (PLZF)
NANOG{mouse}.p2 1.324 NANOG (FLJ12581, FLJ40451)
MYBL2.p2 1.324 MYBL2 (BMYB, B-MYB)
POU5F1_SOX2{dimer}.p2 1.322 POU5F1 (OCT3, Oct4, MGC22487)
SOX2
ATF2.p2 1.313 ATF2 (TREB7, CRE-BP1, HB16)
HSF1,2.p2 1.287 HSF1 (HSTF1)
HSF2
NKX3-1.p2 1.276 NKX3-1 (NKX3.1, BAPX2)
GLI1..3.p2 1.238 GLI1
GLI2 (THP2, HPE9, THP1)
GLI3 (PAP-A, PAPA, PAPA1, PAPB, ACLS, PPDIV)
SOX5.p2 1.235 SOX5 (L-SOX5, MGC35153)
POU1F1.p2 1.235 POU1F1 (GHF-1)
TLX2.p2 1.228 TLX2 (Enx, Tlx2, NCX)
FOXD3.p2 1.221 FOXD3 (Genesis, HFH2)
TP53.p2 1.182 TP53 (p53, LFS1)
EOMES.p2 1.171 EOMES (TBR2)
ZBTB6.p2 1.162 ZBTB6 (ZID)
FOXP3.p2 1.119 FOXP3 (JM2, XPID, AIID, PIDX, DIETER, SCURFIN)
EWSR1-FLI1.p2 1.107 FLI1 (EWSR2, SIC-1)
EWSR1 (EWS, K984G1.4)
SREBF1,2.p2 1.095 SREBF1 (SREBP1, bHLHd1)
SREBF2 (SREBP2, bHLHd2)
SOX2.p2 1.084 SOX2
AIRE.p2 1.066 AIRE (PGA1, APS1)
HOX{A5,B5}.p2 1.058 HOXB5
HOXA5
ALX1.p2 1.055 ALX1
NANOG.p2 1.028 NANOG (FLJ12581, FLJ40451)
NKX2-1,4.p2 1.022 NKX2-1 (TTF-1)
NKX2-4 (NKX2.4)
POU6F1.p2 1.019 POU6F1 (BRN5, MPOU, TCFB1)
SPZ1.p2 1.007 SPZ1 (NYD-TSP1, FLJ25709)
EVI1.p2 0.996 EVI1 (MDS1-EVI1, PRDM3)
HMX1.p2 0.994 HMX1 (H6, NKX5-3)
STAT1,3.p3 0.985 STAT1 (STAT91, ISGF-3)
STAT3 (APRF)
CDC5L.p2 0.949 CDC5L (PCDC5RP, hCDC5, CEF1)
NKX2-3_NKX2-5.p2 0.918 NKX2-5 (CSX1, NKX2.5, NKX4-1)
NKX2-3 (NKX2.3, CSX3, NKX4-3)
ADNP_IRX_SIX_ZHX.p2 0.914 SIX5
ZHX1
IRX4
ADNP (KIAA0784, ADNP1)
ZHX3 (KIAA0395)
ZHX2 (KIAA0854)
IRX5 (IRX-2a)
SIX2
ARID5B.p2 0.897 ARID5B (FLJ21150, MRF2)
NR3C1.p2 0.895 NR3C1 (GR)
FOX{C1,C2}.p2 0.876 FOXC1 (FREAC3, ARA, IGDA, IHG1)
FOXC2 (MFH-1)
T.p2 0.876 T
NKX6-1,2.p2 0.842 NKX6-1 (Nkx6.1)
NKX6-2 (NKX6B, GTX, NKX6.1)
CDX1,2,4.p2 0.831 CDX1
CDX2
CDX4
PPARG.p2 0.828 PPARG (PPARG1, PPARG2, NR1C3, PPARgamma)
CUX2.p2 0.812 CUX2 (KIAA0293, CDP2)
TAL1_TCF{3,4,12}.p2 0.806 TCF3 (E2A, ITF1, MGC129647, MGC129648, bHLHb21)
TCF4 (SEF2-1B, ITF2, bHLHb19)
TAL1 (SCL, bHLHa17)
TCF12 (HEB, HTF4, HsT17266, bHLHb20)
GZF1.p2 0.775 GZF1 (dJ322G13.2, ZBTB23)
VSX1,2.p2 0.712 VSX2 (RET1)
VSX1 (PPD)
AR.p2 0.703 AR (AIS, NR3C4, SMAX1, HUMARA)
REST.p3 0.699 REST (NRSF, XBR)
LHX3,4.p2 0.683 LHX3
LHX4 (Gsh4)
PDX1.p2 0.679 PDX1 (IDX-1, STF-1, PDX-1, MODY4)
RORA.p2 0.629 RORA (RZRA, ROR1, ROR2, ROR3, NR1F1)
NFIL3.p2 0.521 NFIL3 (E4BP4, NFIL3A, NF-IL3A)
PAX6.p2 0.429 PAX6 (D11S812E, AN, WAGR)
NR6A1.p2 0.395 NR6A1 (GCNF1, RTR)
PAX3,7.p2 0.259 PAX7 (Hup1)
PAX3 (HUP2)
PAX8.p2 0.186 PAX8

All samples sorted alphabetically


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Project name:

Sample name Condition Replicate/Batch
Rep1_GM12878
Rep1_HMEC
Rep1_HSMM
Rep1_HepG2
Rep1_Huvec
Rep1_K562
Rep1_NHEK
Rep1_NHLF
Rep2_GM12878
Rep2_HMEC
Rep2_HSMM
Rep2_HepG2
Rep2_Huvec
Rep2_K562
Rep2_NHEK
Rep2_NHLF