ISMARA results: Appendix

Sample name: Appendix

Sorted Z-values histogram for the sample Appendix

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
UUUUUGC	12.872
SRF.p3	6.882	SRF
POU2F1..3.p2	6.223	POU2F2 POU2F1 POU2F3
CUCCCAA	6.108
TLX1..3_NFIC{dimer}.p2	5.890	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
MYFfamily.p2	5.481	MYOD1 MYF6 MYF5 MYOG
GTF2I.p2	5.114	GTF2I
UGAAAUG	5.029
TEAD1.p2	4.747	TEAD1 TEAD2 TEAD3 TEAD4
POU1F1.p2	4.667	POU1F1
EVI1.p2	4.570	EVI1
RREB1.p2	4.550	RREB1
NR1H4.p2	4.546	NR1H4
GAGGUAG	4.294
MYOD1.p2	4.281	MYOD1
SMAD1..7,9.p2	4.271	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
NFKB1_REL_RELA.p2	4.193	RELA REL NFKB1
FOX{D1,D2}.p2	4.125	FOXD2 FOXD1
GATA6.p2	4.054	GATA6
NFATC1..3.p2	3.856	NFATC3 NFATC2 NFATC1
JUN.p2	3.847	JUN JUND JUNB
ZIC1..3.p2	3.843	ZIC1 ZIC2 ZIC3
UCCCUUU	3.794
ZNF384.p2	3.613	ZNF384
TGIF1.p2	3.589	TGIF1
GTF2A1,2.p2	3.585	GTF2A1 GTF2A2
KLF12.p2	3.565	KLF12
HBP1_HMGB_SSRP1_UBTF.p2	3.545	HMGB2 HMGB3 SSRP1 UBTF HBP1
ZNF238.p2	3.544	ZNF238
FOXA2.p3	3.504	FOXA2
EN1,2.p2	3.502	EN1 EN2
TBP.p2	3.406	TBP
UUGUUCG	3.354
NANOG{mouse}.p2	3.166	NANOG
RBPJ.p2	3.164	RBPJ
GATA1..3.p2	3.013	GATA1 GATA2 GATA3
AAAGUGC	2.908
STAT1,3.p3	2.883	STAT1 STAT3
UGUGCUU	2.851
LEF1_TCF7_TCF7L1,2.p2	2.833	TCF7 TCF7L2 LEF1 TCF7L1
REST.p3	2.743	REST
TBX4,5.p2	2.737	TBX5 TBX4
TCF4_dimer.p2	2.720	TCF4
POU5F1.p2	2.705	POU5F1
GUAAACA	2.677
FOXP3.p2	2.654	FOXP3
FEV.p2	2.580	FEV
STAT2,4,6.p2	2.514	STAT2 STAT4 STAT6
NR6A1.p2	2.495	NR6A1
MEF2{A,B,C,D}.p2	2.471	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
HNF1A.p2	2.454	HNF1A
AAGUGCU	2.430
POU5F1_SOX2{dimer}.p2	2.381	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
CACAGUG	2.381
AGCACCA	2.338
MTF1.p2	2.294	MTF1
SNAI1..3.p2	2.289	SNAI2 SNAI1 SNAI3
UGCAUAG	2.287
CDC5L.p2	2.257	CDC5L
ATF6.p2	2.253	ATF6
GGCUCAG	2.245
ETS1,2.p2	2.214	ETS2 ETS1
FOX{C1,C2}.p2	2.214	FOXC1 FOXC2
MAZ.p2	2.207	MAZ
HAND1,2.p2	2.198	HAND1 HAND2
HIC1.p2	2.176	HIC1
TFCP2.p2	2.153	TFCP2
ALX1.p2	2.069	ALX1
FOSL2.p2	2.056	FOSL2
ZEB1.p2	2.054	ZEB1
EBF1.p2	1.914	EBF1
AIRE.p2	1.863	AIRE
TLX2.p2	1.848	TLX2
AAUACUG	1.831
MYBL2.p2	1.823	MYBL2
SRY.p2	1.815	SRY
GGCAGUG	1.773
EGR1..3.p2	1.765	EGR3 EGR1 EGR2
PPARG.p2	1.717	PPARG
GAUCAGA	1.677
GAGAACU	1.663
NR3C1.p2	1.660	NR3C1
AGCUGCC	1.647
MZF1.p2	1.584	MZF1
UAAGACU	1.498
AACACUG	1.466
POU3F1..4.p2	1.436	POU3F1 POU3F3 POU3F2 POU3F4
AHR_ARNT_ARNT2.p2	1.393	ARNT AHR ARNT2
NHLH1,2.p2	1.392	NHLH1 NHLH2
TFAP4.p2	1.363	TFAP4
NKX2-1,4.p2	1.354	NKX2-1 NKX2-4
TFEB.p2	1.349	TFEB
ONECUT1,2.p2	1.344	ONECUT2 ONECUT1
HMGA1,2.p2	1.331	HMGA1 HMGA2
HMX1.p2	1.326	HMX1
GAGAUGA	1.311
NFIX.p2	1.264	NFIX
PAX6.p2	1.260	PAX6
CCAGCAU	1.192
AGCAGCA	1.182
AR.p2	1.168	AR
ACAUUCA	1.168
NKX2-3_NKX2-5.p2	1.163	NKX2-5 NKX2-3
DBP.p2	1.146	DBP
EOMES.p2	1.129	EOMES
TAL1_TCF{3,4,12}.p2	1.104	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
CUUUGGU	1.058
TFAP2{A,C}.p2	1.022	TFAP2C TFAP2A
PAX2.p2	1.001	PAX2
AUGGCUU	0.971
AAUCUCU	0.971
CGUGUCU	0.968
RUNX1..3.p2	0.968	RUNX1 RUNX3 RUNX2
CCCUGAG	0.930
NANOG.p2	0.903	NANOG
UCACAGU	0.888
STAT5{A,B}.p2	0.885	STAT5B STAT5A
FOXL1.p2	0.845	FOXL1
PDX1.p2	0.837	PDX1
PRDM1.p3	0.816	PRDM1
UAUUGCU	0.807
PRRX1,2.p2	0.776	PRRX2 PRRX1
CUACAGU	0.751
RFX1..5_RFXANK_RFXAP.p2	0.746	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
GGAAGAC	0.699
RXR{A,B,G}.p2	0.694	RXRA RXRB RXRG
MSX1,2.p2	0.685	MSX1 MSX2
IKZF2.p2	0.673	IKZF2
UAAUGCU	0.598
HOXA9_MEIS1.p2	0.585	MEIS1 HOXA9
AGCUUAU	0.558
ACUGCAU	0.541
POU6F1.p2	0.516	POU6F1
VSX1,2.p2	0.514	VSX2 VSX1
ACCCUGU	0.497
ADNP_IRX_SIX_ZHX.p2	0.491	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
CGUACCG	0.458
AUGACAC	0.449
ZNF423.p2	0.446	ZNF423
AAUGCCC	0.440
CCAGUGU	0.400
PAX8.p2	0.398	PAX8
NFIL3.p2	0.398	NFIL3
HLF.p2	0.374	HLF
AGGUAGU	0.372
NKX6-1,2.p2	0.311	NKX6-1 NKX6-2
RORA.p2	0.305	RORA
UUGGCAA	0.291
RXRA_VDR{dimer}.p2	0.286	VDR	$logo of RXRA_VDR{dimer}.p2$
CDX1,2,4.p2	0.282	CDX1 CDX2 CDX4
FOX{F1,F2,J1}.p2	0.266	FOXF2 FOXJ1 FOXF1
GGCAAGA	0.261
AUGUGCC	0.249
AAGGCAC	0.178
AACCUGG	0.168
AGUGCAA	0.129
AAUCUCA	0.114
PAX4.p2	0.082	PAX4
GFI1B.p2	0.072	GFI1B
UGUGCGU	0.061
UGCAUUG	0.048
PAX3,7.p2	0.047	PAX7 PAX3
GUAGUGU	0.031
HOX{A4,D4}.p2	0.018	HOXA4 HOXD4
FOX{I1,J2}.p2	0.009	FOXI1 FOXJ2
CREB1.p2	-0.003	CREB1
SREBF1,2.p2	-0.004	SREBF1 SREBF2
AACGGAA	-0.017
HSF1,2.p2	-0.031	HSF1 HSF2
GUCAGUU	-0.034
FOXO1,3,4.p2	-0.039	FOXO1 FOXO4 FOXO3
ACCCGUA	-0.061
LHX3,4.p2	-0.123	LHX3 LHX4
CCUUCAU	-0.126
UUGGCAC	-0.157
GAUAUGU	-0.165
SPZ1.p2	-0.231	SPZ1
NFE2L1.p2	-0.252	NFE2L1
ACAGUAC	-0.266
GAUUGUC	-0.277
UGACCUA	-0.279
ACAGUAU	-0.287
FOS_FOS{B,L1}_JUN{B,D}.p2	-0.290	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
CUX2.p2	-0.309	CUX2
AACAGUC	-0.322
UAAGACG	-0.347
AGCAGCG	-0.385
GCUACAU	-0.391
GCAGCAU	-0.393
HNF4A_NR2F1,2.p2	-0.402	NR2F1 NR2F2 HNF4A
ACUGGCC	-0.406
AUUGCAC	-0.413
CRX.p2	-0.458	CRX
PITX1..3.p2	-0.480	PITX2 PITX3 PITX1
HOX{A5,B5}.p2	-0.497	HOXB5 HOXA5
GGACGGA	-0.509
HOX{A6,A7,B6,B7}.p2	-0.548	HOXB6 HOXA7 HOXB7 HOXA6
GZF1.p2	-0.590	GZF1
EP300.p2	-0.606	EP300
IKZF1.p2	-0.624	IKZF1
AAGGUGC	-0.666
CAGUGCA	-0.690
IRF1,2,7.p3	-0.703	IRF1 IRF2 IRF7
ATF2.p2	-0.735	ATF2
NR4A2.p2	-0.759	NR4A2
CAGCAGG	-0.795
AACCGUU	-0.805
UUGGUCC	-0.807
SOX5.p2	-0.810	SOX5
FOXQ1.p2	-0.870	FOXQ1
UCCAGUU	-0.898
T.p2	-0.904	T
NKX3-2.p2	-1.000	NKX3-2
ESR1.p2	-1.013	ESR1
NKX3-1.p2	-1.016	NKX3-1
EWSR1-FLI1.p2	-1.028	FLI1 EWSR1
UCAAGUA	-1.034
GUAACAG	-1.035
ZBTB6.p2	-1.067	ZBTB6
GCUGGUG	-1.077
SOX17.p2	-1.118	SOX17
GGAGUGU	-1.144
CEBPA,B_DDIT3.p2	-1.159	DDIT3 CEBPA CEBPB
NFE2.p2	-1.201	NFE2
GLI1..3.p2	-1.228	GLI1 GLI2 GLI3
ARID5B.p2	-1.424	ARID5B
PAX5.p2	-1.442	PAX5
RXRG_dimer.p3	-1.455	NR1H2 RXRA PPARG PPARA RXRB RXRG
GFI1.p2	-1.482	GFI1
AUGGCAC	-1.537
ZFP161.p2	-1.655	ZFP161
AGUGGUU	-1.669
SOX{8,9,10}.p2	-1.721	SOX9 SOX8 SOX10
ZNF148.p2	-1.738	ZNF148
PATZ1.p2	-1.831	PATZ1
SPI1.p2	-1.886	SPI1
ZBTB16.p2	-1.923	ZBTB16
GUGCAAA	-1.970
NR5A1,2.p2	-2.087	NR5A1 NR5A2
CTCF.p2	-2.097	CTCF
DMAP1_NCOR{1,2}_SMARC.p2	-2.161	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
SPIB.p2	-2.244	SPIB
UCACAUU	-2.394
PBX1.p2	-2.513	PBX1
FOXN1.p2	-2.587	FOXN1
FOXD3.p2	-2.716	FOXD3
KLF4.p3	-2.881	KLF4
TFDP1.p2	-3.021	TFDP1
NKX2-2,8.p2	-3.144	NKX2-2 NKX2-8
BACH2.p2	-3.444	BACH2
SOX2.p2	-3.555	SOX2
TP53.p2	-3.821	TP53
NFE2L2.p2	-3.923	NFE2L2
ATF4.p2	-3.943	ATF4
LMO2.p2	-3.990	LMO2
TFAP2B.p2	-3.993	TFAP2B
bHLH_family.p2	-4.322	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
MAFB.p2	-4.331	MAFB
BPTF.p2	-4.472	BPTF
HES1.p2	-4.863	HES1
SP1.p2	-5.251	SP1
E2F1..5.p2	-5.324	E2F4 E2F5 E2F2 E2F1 E2F3
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-5.809	ARNT MAX MYC USF1 BHLHB2 ARNT2
EHF.p2	-5.946	EHF
HIF1A.p2	-6.051	HIF1A
ELF1,2,4.p2	-6.239	ELF2 ELF1 ELF4
ATF5_CREB3.p2	-6.565	ATF5 CREB3
XBP1.p3	-7.026	XBP1
GGAAUGU	-7.192
ESRRA.p2	-7.998	ESRRA
MYB.p2	-8.450	MYB
ZNF143.p2	-10.714	ZNF143
NFY{A,B,C}.p2	-11.706	NFYC NFYB NFYA
ELK1,4_GABP{A,B1}.p3	-12.066	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
YY1.p2	-16.308	YY1
NRF1.p2	-17.015	NRF1

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Sample name: Appendix

Sorted z-values for every WM.