ISMARA results: Hypothalamus

Sample name: Hypothalamus

Sorted Z-values histogram for the sample Hypothalamus

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
RFX1..5_RFXANK_RFXAP.p2	9.608	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
REST.p3	8.084	REST
HIC1.p2	7.026	HIC1
NHLH1,2.p2	5.554	NHLH1 NHLH2
ATF2.p2	5.452	ATF2
TGIF1.p2	5.448	TGIF1
KLF12.p2	5.413	KLF12
ZIC1..3.p2	5.371	ZIC1 ZIC2 ZIC3
ESRRA.p2	4.920	ESRRA
SRY.p2	4.735	SRY
ZFP161.p2	4.689	ZFP161
HOX{A6,A7,B6,B7}.p2	4.594	HOXB6 HOXA7 HOXB7 HOXA6
MEF2{A,B,C,D}.p2	4.592	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
TFCP2.p2	4.403	TFCP2
MAFB.p2	4.370	MAFB
GGCAGUG	4.100
MTF1.p2	4.017	MTF1
TCF4_dimer.p2	4.004	TCF4
SOX2.p2	3.775	SOX2
UUGGUCC	3.757
FOX{I1,J2}.p2	3.746	FOXI1 FOXJ2
UGUGCUU	3.727
AAUACUG	3.705
PAX2.p2	3.688	PAX2
TAL1_TCF{3,4,12}.p2	3.677	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
MYOD1.p2	3.596	MYOD1
PAX4.p2	3.394	PAX4
UAAGACG	3.387
HOX{A5,B5}.p2	3.362	HOXB5 HOXA5
AGUGCAA	3.316
IKZF2.p2	3.165	IKZF2
GATA1..3.p2	3.115	GATA1 GATA2 GATA3
SOX{8,9,10}.p2	3.101	SOX9 SOX8 SOX10
NFIX.p2	3.075	NFIX
UUGGCAC	2.980
LMO2.p2	2.971	LMO2
STAT2,4,6.p2	2.924	STAT2 STAT4 STAT6
CUCCCAA	2.920
JUN.p2	2.877	JUN JUND JUNB
SPZ1.p2	2.840	SPZ1
EVI1.p2	2.829	EVI1
MZF1.p2	2.807	MZF1
ZNF384.p2	2.802	ZNF384
RREB1.p2	2.635	RREB1
NKX3-2.p2	2.599	NKX3-2
HSF1,2.p2	2.553	HSF1 HSF2
ZBTB6.p2	2.536	ZBTB6
TFEB.p2	2.528	TFEB
GTF2I.p2	2.462	GTF2I
SP1.p2	2.444	SP1
TBX4,5.p2	2.415	TBX5 TBX4
HAND1,2.p2	2.395	HAND1 HAND2
GUGCAAA	2.334
AUUGCAC	2.199
GCUACAU	2.142
SMAD1..7,9.p2	2.075	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
ACAUUCA	2.069
AGCAGCA	2.005
AACACUG	1.915
GUCAGUU	1.864
GFI1.p2	1.811	GFI1
FOXO1,3,4.p2	1.793	FOXO1 FOXO4 FOXO3
UAAGACU	1.741
CAGCAGG	1.715
EBF1.p2	1.654	EBF1
NR5A1,2.p2	1.632	NR5A1 NR5A2
EWSR1-FLI1.p2	1.623	FLI1 EWSR1
TBP.p2	1.617	TBP
MYFfamily.p2	1.582	MYOD1 MYF6 MYF5 MYOG
SREBF1,2.p2	1.555	SREBF1 SREBF2
AUGGCUU	1.546
GGCUCAG	1.545
TLX1..3_NFIC{dimer}.p2	1.526	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
POU5F1_SOX2{dimer}.p2	1.515	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
HMGA1,2.p2	1.505	HMGA1 HMGA2
FOXP3.p2	1.472	FOXP3
CUACAGU	1.411
DBP.p2	1.396	DBP
CACAGUG	1.384
EGR1..3.p2	1.314	EGR3 EGR1 EGR2
MAZ.p2	1.281	MAZ
UCCCUUU	1.261
ESR1.p2	1.261	ESR1
RXR{A,B,G}.p2	1.241	RXRA RXRB RXRG
AAGUGCU	1.224
GAUCAGA	1.208
GAGAACU	1.154
UAUUGCU	1.133
GGAAGAC	1.096
PRRX1,2.p2	1.061	PRRX2 PRRX1
EN1,2.p2	1.008	EN1 EN2
UGCAUUG	0.948
NR3C1.p2	0.923	NR3C1
CDC5L.p2	0.923	CDC5L
AUGACAC	0.899
GLI1..3.p2	0.874	GLI1 GLI2 GLI3
CTCF.p2	0.835	CTCF
NKX2-3_NKX2-5.p2	0.834	NKX2-5 NKX2-3
IKZF1.p2	0.767	IKZF1
PAX6.p2	0.727	PAX6
NR6A1.p2	0.721	NR6A1
CEBPA,B_DDIT3.p2	0.707	DDIT3 CEBPA CEBPB
CDX1,2,4.p2	0.687	CDX1 CDX2 CDX4
ALX1.p2	0.678	ALX1
FOX{F1,F2,J1}.p2	0.660	FOXF2 FOXJ1 FOXF1
GZF1.p2	0.660	GZF1
AACAGUC	0.653
GCUGGUG	0.615
CCAGCAU	0.609
GGCAAGA	0.593
UGAAAUG	0.589
CUX2.p2	0.588	CUX2
NFE2L2.p2	0.569	NFE2L2
NKX3-1.p2	0.560	NKX3-1
CAGUGCA	0.530
AACGGAA	0.500
MSX1,2.p2	0.499	MSX1 MSX2
NANOG{mouse}.p2	0.446	NANOG
UGUGCGU	0.443
UCACAGU	0.439
FOX{D1,D2}.p2	0.430	FOXD2 FOXD1
NKX2-2,8.p2	0.415	NKX2-2 NKX2-8
SNAI1..3.p2	0.403	SNAI2 SNAI1 SNAI3
RXRA_VDR{dimer}.p2	0.400	VDR	$logo of RXRA_VDR{dimer}.p2$
AAAGUGC	0.399
LEF1_TCF7_TCF7L1,2.p2	0.358	TCF7 TCF7L2 LEF1 TCF7L1
HOXA9_MEIS1.p2	0.351	MEIS1 HOXA9
POU5F1.p2	0.317	POU5F1
ACUGGCC	0.312
ACUGCAU	0.310
STAT1,3.p3	0.290	STAT1 STAT3
CGUGUCU	0.274
PDX1.p2	0.267	PDX1
PAX8.p2	0.249	PAX8
NR4A2.p2	0.244	NR4A2
GFI1B.p2	0.212	GFI1B
NFIL3.p2	0.211	NFIL3
UGCAUAG	0.202
RORA.p2	0.197	RORA
NKX6-1,2.p2	0.190	NKX6-1 NKX6-2
AR.p2	0.182	AR
UGACCUA	0.123
PAX3,7.p2	0.069	PAX7 PAX3
ATF4.p2	0.059	ATF4
CRX.p2	0.050	CRX
POU3F1..4.p2	0.045	POU3F1 POU3F3 POU3F2 POU3F4
ETS1,2.p2	0.040	ETS2 ETS1
HES1.p2	0.027	HES1
CCAGUGU	0.025
HBP1_HMGB_SSRP1_UBTF.p2	-0.015	HMGB2 HMGB3 SSRP1 UBTF HBP1
POU6F1.p2	-0.029	POU6F1
FOXL1.p2	-0.056	FOXL1
AUGGCAC	-0.059
AACCGUU	-0.086
ACCCGUA	-0.092
ATF5_CREB3.p2	-0.098	ATF5 CREB3
NKX2-1,4.p2	-0.127	NKX2-1 NKX2-4
AGCUGCC	-0.149
GGAAUGU	-0.152
STAT5{A,B}.p2	-0.182	STAT5B STAT5A
GGACGGA	-0.182
PAX5.p2	-0.207	PAX5
ACCCUGU	-0.210
NFE2.p2	-0.219	NFE2
CGUACCG	-0.248
GCAGCAU	-0.286
FEV.p2	-0.298	FEV
GAGAUGA	-0.299
GTF2A1,2.p2	-0.325	GTF2A1 GTF2A2
MYBL2.p2	-0.342	MYBL2
FOS_FOS{B,L1}_JUN{B,D}.p2	-0.401	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
NFATC1..3.p2	-0.401	NFATC3 NFATC2 NFATC1
GUAAACA	-0.404
AAUCUCA	-0.415
AAUGCCC	-0.436
RUNX1..3.p2	-0.439	RUNX1 RUNX3 RUNX2
GGAGUGU	-0.454
AAUCUCU	-0.474
ARID5B.p2	-0.481	ARID5B
EOMES.p2	-0.491	EOMES
AGCAGCG	-0.495
UAAUGCU	-0.497
AIRE.p2	-0.517	AIRE
NANOG.p2	-0.545	NANOG
NRF1.p2	-0.564	NRF1
PBX1.p2	-0.575	PBX1
NFE2L1.p2	-0.591	NFE2L1
GAUAUGU	-0.630
ZNF423.p2	-0.630	ZNF423
TFAP2B.p2	-0.654	TFAP2B
CCUUCAU	-0.691
AGUGGUU	-0.700
TEAD1.p2	-0.761	TEAD1 TEAD2 TEAD3 TEAD4
AAGGUGC	-0.779
VSX1,2.p2	-0.790	VSX2 VSX1
BACH2.p2	-0.824	BACH2
GUAACAG	-0.826
HOX{A4,D4}.p2	-0.847	HOXA4 HOXD4
HNF4A_NR2F1,2.p2	-0.851	NR2F1 NR2F2 HNF4A
FOXN1.p2	-0.913	FOXN1
NR1H4.p2	-0.921	NR1H4
UUUUUGC	-0.995
RXRG_dimer.p3	-1.002	NR1H2 RXRA PPARG PPARA RXRB RXRG
AACCUGG	-1.046
EHF.p2	-1.055	EHF
AGGUAGU	-1.062
LHX3,4.p2	-1.082	LHX3 LHX4
T.p2	-1.106	T
HLF.p2	-1.153	HLF
UCCAGUU	-1.155
TLX2.p2	-1.205	TLX2
ONECUT1,2.p2	-1.232	ONECUT2 ONECUT1
UUGUUCG	-1.232
UUGGCAA	-1.295
HIF1A.p2	-1.362	HIF1A
ZEB1.p2	-1.376	ZEB1
FOXQ1.p2	-1.383	FOXQ1
POU1F1.p2	-1.385	POU1F1
TP53.p2	-1.401	TP53
FOX{C1,C2}.p2	-1.427	FOXC1 FOXC2
PRDM1.p3	-1.445	PRDM1
GUAGUGU	-1.474
FOSL2.p2	-1.483	FOSL2
ELK1,4_GABP{A,B1}.p3	-1.542	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
ACAGUAU	-1.560
PATZ1.p2	-1.586	PATZ1
SOX5.p2	-1.637	SOX5
KLF4.p3	-1.679	KLF4
HMX1.p2	-1.807	HMX1
BPTF.p2	-1.886	BPTF
ACAGUAC	-1.955
AGCUUAU	-1.980
PPARG.p2	-1.997	PPARG
ZNF238.p2	-2.022	ZNF238
UCACAUU	-2.092
TFAP2{A,C}.p2	-2.093	TFAP2C TFAP2A
AGCACCA	-2.175
TFAP4.p2	-2.324	TFAP4
CCCUGAG	-2.325
IRF1,2,7.p3	-2.368	IRF1 IRF2 IRF7
GATA6.p2	-2.378	GATA6
ATF6.p2	-2.412	ATF6
ADNP_IRX_SIX_ZHX.p2	-2.467	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
DMAP1_NCOR{1,2}_SMARC.p2	-2.487	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
AAGGCAC	-2.515
CUUUGGU	-2.533
ZNF143.p2	-2.558	ZNF143
AUGUGCC	-2.559
GAGGUAG	-2.596
ZNF148.p2	-2.640	ZNF148
SRF.p3	-2.669	SRF
SOX17.p2	-2.692	SOX17
HNF1A.p2	-2.699	HNF1A
ZBTB16.p2	-2.756	ZBTB16
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-2.829	ARNT MAX MYC USF1 BHLHB2 ARNT2
FOXA2.p3	-2.957	FOXA2
RBPJ.p2	-3.091	RBPJ
CREB1.p2	-3.110	CREB1
SPIB.p2	-3.267	SPIB
UCAAGUA	-3.317
AHR_ARNT_ARNT2.p2	-3.598	ARNT AHR ARNT2
FOXD3.p2	-3.827	FOXD3
GAUUGUC	-3.828
XBP1.p3	-4.046	XBP1
POU2F1..3.p2	-4.148	POU2F2 POU2F1 POU2F3
EP300.p2	-4.476	EP300
YY1.p2	-4.531	YY1
MYB.p2	-4.533	MYB
bHLH_family.p2	-5.336	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
NFKB1_REL_RELA.p2	-5.797	RELA REL NFKB1
PITX1..3.p2	-6.200	PITX2 PITX3 PITX1
SPI1.p2	-6.257	SPI1
E2F1..5.p2	-7.733	E2F4 E2F5 E2F2 E2F1 E2F3
NFY{A,B,C}.p2	-8.593	NFYC NFYB NFYA
ELF1,2,4.p2	-8.908	ELF2 ELF1 ELF4
TFDP1.p2	-9.226	TFDP1

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Sample name: Hypothalamus

Sorted z-values for every WM.