ISMARA results: Liver

Sample name: Liver

Sorted Z-values histogram for the sample Liver

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
HNF1A.p2	18.667	HNF1A
HNF4A_NR2F1,2.p2	17.160	NR2F1 NR2F2 HNF4A
TBP.p2	8.273	TBP
FOXA2.p3	7.962	FOXA2
NR5A1,2.p2	6.622	NR5A1 NR5A2
MYFfamily.p2	6.105	MYOD1 MYF6 MYF5 MYOG
SMAD1..7,9.p2	5.971	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
HLF.p2	5.462	HLF
FOX{F1,F2,J1}.p2	5.437	FOXF2 FOXJ1 FOXF1
HAND1,2.p2	5.333	HAND1 HAND2
NR1H4.p2	5.209	NR1H4
FOX{C1,C2}.p2	5.095	FOXC1 FOXC2
RREB1.p2	5.049	RREB1
POU1F1.p2	4.845	POU1F1
GATA6.p2	4.820	GATA6
TLX1..3_NFIC{dimer}.p2	4.662	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
MTF1.p2	4.526	MTF1
NFIL3.p2	4.411	NFIL3
CEBPA,B_DDIT3.p2	4.224	DDIT3 CEBPA CEBPB
ADNP_IRX_SIX_ZHX.p2	4.121	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
GAGGUAG	3.929
PATZ1.p2	3.861	PATZ1
FOSL2.p2	3.717	FOSL2
EN1,2.p2	3.709	EN1 EN2
CAGCAGG	3.686
DBP.p2	3.655	DBP
CCCUGAG	3.651
GTF2A1,2.p2	3.644	GTF2A1 GTF2A2
STAT2,4,6.p2	3.572	STAT2 STAT4 STAT6
NR4A2.p2	3.552	NR4A2
MAZ.p2	3.414	MAZ
TFCP2.p2	3.407	TFCP2
FOXP3.p2	3.393	FOXP3
AIRE.p2	3.331	AIRE
MSX1,2.p2	3.248	MSX1 MSX2
TCF4_dimer.p2	3.164	TCF4
HOX{A5,B5}.p2	3.078	HOXB5 HOXA5
RUNX1..3.p2	3.077	RUNX1 RUNX3 RUNX2
REST.p3	2.931	REST
EP300.p2	2.921	EP300
ETS1,2.p2	2.900	ETS2 ETS1
HIC1.p2	2.845	HIC1
TGIF1.p2	2.813	TGIF1
MYOD1.p2	2.780	MYOD1
ZNF423.p2	2.704	ZNF423
POU5F1_SOX2{dimer}.p2	2.696	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
CACAGUG	2.499
PPARG.p2	2.483	PPARG
AR.p2	2.310	AR
CUUUGGU	2.237
NHLH1,2.p2	2.121	NHLH1 NHLH2
NFIX.p2	2.116	NFIX
RXRA_VDR{dimer}.p2	2.098	VDR	$logo of RXRA_VDR{dimer}.p2$
IKZF1.p2	2.083	IKZF1
KLF12.p2	2.075	KLF12
SP1.p2	2.048	SP1
bHLH_family.p2	2.028	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
POU2F1..3.p2	2.024	POU2F2 POU2F1 POU2F3
GGCAGUG	1.962
GAGAUGA	1.922
EVI1.p2	1.870	EVI1
NR6A1.p2	1.799	NR6A1
NANOG{mouse}.p2	1.696	NANOG
ESR1.p2	1.638	ESR1
NANOG.p2	1.627	NANOG
ONECUT1,2.p2	1.623	ONECUT2 ONECUT1
ZEB1.p2	1.593	ZEB1
ZBTB6.p2	1.557	ZBTB6
GGACGGA	1.513
UCCCUUU	1.468
FOXL1.p2	1.444	FOXL1
AGCAGCA	1.434
ACCCUGU	1.402
AGCAGCG	1.354
UGCAUAG	1.342
NKX2-3_NKX2-5.p2	1.294	NKX2-5 NKX2-3
GLI1..3.p2	1.178	GLI1 GLI2 GLI3
NFKB1_REL_RELA.p2	1.144	RELA REL NFKB1
GGCUCAG	1.140
LEF1_TCF7_TCF7L1,2.p2	1.133	TCF7 TCF7L2 LEF1 TCF7L1
CDC5L.p2	1.132	CDC5L
GUAGUGU	1.121
CRX.p2	1.112	CRX
CTCF.p2	1.091	CTCF
GATA1..3.p2	1.089	GATA1 GATA2 GATA3
GAUUGUC	1.079
AAGGCAC	1.076
AAGUGCU	0.998
POU6F1.p2	0.972	POU6F1
ATF6.p2	0.967	ATF6
SNAI1..3.p2	0.948	SNAI2 SNAI1 SNAI3
RXR{A,B,G}.p2	0.936	RXRA RXRB RXRG
STAT1,3.p3	0.929	STAT1 STAT3
ZNF238.p2	0.920	ZNF238
POU3F1..4.p2	0.873	POU3F1 POU3F3 POU3F2 POU3F4
AGUGCAA	0.855
PRDM1.p3	0.822	PRDM1
POU5F1.p2	0.816	POU5F1
RORA.p2	0.796	RORA
HMGA1,2.p2	0.780	HMGA1 HMGA2
GTF2I.p2	0.776	GTF2I
HSF1,2.p2	0.773	HSF1 HSF2
TFAP2{A,C}.p2	0.737	TFAP2C TFAP2A
FEV.p2	0.737	FEV
RXRG_dimer.p3	0.736	NR1H2 RXRA PPARG PPARA RXRB RXRG
IRF1,2,7.p3	0.731	IRF1 IRF2 IRF7
GGCAAGA	0.730
AACAGUC	0.713
CUX2.p2	0.687	CUX2
UUGUUCG	0.669
NFE2.p2	0.660	NFE2
NFE2L1.p2	0.653	NFE2L1
SRY.p2	0.626	SRY
GFI1B.p2	0.619	GFI1B
TLX2.p2	0.577	TLX2
GAUCAGA	0.575
UAUUGCU	0.567
PBX1.p2	0.564	PBX1
UGUGCGU	0.525
AACGGAA	0.512
TBX4,5.p2	0.502	TBX5 TBX4
HOX{A4,D4}.p2	0.477	HOXA4 HOXD4
AUGGCUU	0.465
AAGGUGC	0.434
AUGUGCC	0.395
EOMES.p2	0.345	EOMES
TP53.p2	0.344	TP53
ACUGGCC	0.316
CGUACCG	0.281
PAX6.p2	0.266	PAX6
FOX{I1,J2}.p2	0.258	FOXI1 FOXJ2
EBF1.p2	0.258	EBF1
PITX1..3.p2	0.239	PITX2 PITX3 PITX1
VSX1,2.p2	0.220	VSX2 VSX1
GAUAUGU	0.206
AAUCUCU	0.190
AAUCUCA	0.161
NKX2-1,4.p2	0.142	NKX2-1 NKX2-4
UUGGCAC	0.133
SREBF1,2.p2	0.112	SREBF1 SREBF2
PAX3,7.p2	0.106	PAX7 PAX3
AUGACAC	0.082
AGCUUAU	0.048
DMAP1_NCOR{1,2}_SMARC.p2	0.009	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
AUGGCAC	0.006
NKX3-1.p2	0.003	NKX3-1
HOXA9_MEIS1.p2	-0.004	MEIS1 HOXA9
UAAUGCU	-0.012
GGAAGAC	-0.029
ACCCGUA	-0.050
NFY{A,B,C}.p2	-0.076	NFYC NFYB NFYA
HIF1A.p2	-0.082	HIF1A
AHR_ARNT_ARNT2.p2	-0.084	ARNT AHR ARNT2
CDX1,2,4.p2	-0.120	CDX1 CDX2 CDX4
CGUGUCU	-0.156
JUN.p2	-0.181	JUN JUND JUNB
HBP1_HMGB_SSRP1_UBTF.p2	-0.225	HMGB2 HMGB3 SSRP1 UBTF HBP1
PDX1.p2	-0.227	PDX1
BPTF.p2	-0.229	BPTF
T.p2	-0.245	T
CCAGCAU	-0.251
AAUGCCC	-0.257
PAX8.p2	-0.274	PAX8
GUAAACA	-0.298
GUAACAG	-0.340
ATF2.p2	-0.400	ATF2
MEF2{A,B,C,D}.p2	-0.417	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
AAAGUGC	-0.440
ACAGUAU	-0.474
SOX17.p2	-0.490	SOX17
CCUUCAU	-0.507
UAAGACU	-0.508
GAGAACU	-0.525
UGACCUA	-0.549
STAT5{A,B}.p2	-0.554	STAT5B STAT5A
FOXQ1.p2	-0.574	FOXQ1
AGGUAGU	-0.591
TFEB.p2	-0.617	TFEB
UGCAUUG	-0.626
ZNF148.p2	-0.632	ZNF148
XBP1.p3	-0.667	XBP1
HOX{A6,A7,B6,B7}.p2	-0.668	HOXB6 HOXA7 HOXB7 HOXA6
GCAGCAU	-0.670
AACCUGG	-0.697
NKX6-1,2.p2	-0.717	NKX6-1 NKX6-2
PAX2.p2	-0.728	PAX2
AACCGUU	-0.731
UGUGCUU	-0.743
GCUACAU	-0.757
NR3C1.p2	-0.788	NR3C1
SOX5.p2	-0.803	SOX5
TFAP2B.p2	-0.819	TFAP2B
GGAGUGU	-0.937
FOX{D1,D2}.p2	-0.940	FOXD2 FOXD1
ZFP161.p2	-0.959	ZFP161
ZIC1..3.p2	-0.959	ZIC1 ZIC2 ZIC3
UUGGCAA	-1.005
ACUGCAU	-1.005
LMO2.p2	-1.018	LMO2
ATF4.p2	-1.020	ATF4
HMX1.p2	-1.035	HMX1
AGCUGCC	-1.038
GZF1.p2	-1.079	GZF1
TAL1_TCF{3,4,12}.p2	-1.085	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
TFAP4.p2	-1.094	TFAP4
UCCAGUU	-1.118
EWSR1-FLI1.p2	-1.152	FLI1 EWSR1
SRF.p3	-1.175	SRF
LHX3,4.p2	-1.187	LHX3 LHX4
GUCAGUU	-1.198
AGCACCA	-1.214
MYBL2.p2	-1.230	MYBL2
CCAGUGU	-1.260
SPIB.p2	-1.303	SPIB
NFATC1..3.p2	-1.314	NFATC3 NFATC2 NFATC1
ACAGUAC	-1.359
RBPJ.p2	-1.384	RBPJ
GUGCAAA	-1.394
SPZ1.p2	-1.429	SPZ1
UUGGUCC	-1.443
ZNF384.p2	-1.450	ZNF384
ARID5B.p2	-1.537	ARID5B
AUUGCAC	-1.550
UCACAGU	-1.589
FOS_FOS{B,L1}_JUN{B,D}.p2	-1.611	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
GCUGGUG	-1.676
PAX4.p2	-1.683	PAX4
RFX1..5_RFXANK_RFXAP.p2	-1.718	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
UAAGACG	-1.756
ALX1.p2	-1.820	ALX1
UGAAAUG	-1.879
HES1.p2	-1.892	HES1
CUACAGU	-1.898
AACACUG	-1.917
AGUGGUU	-2.095
FOXO1,3,4.p2	-2.138	FOXO1 FOXO4 FOXO3
UCACAUU	-2.297
AAUACUG	-2.321
TEAD1.p2	-2.380	TEAD1 TEAD2 TEAD3 TEAD4
ESRRA.p2	-2.449	ESRRA
NKX3-2.p2	-2.638	NKX3-2
PAX5.p2	-2.685	PAX5
SOX2.p2	-2.697	SOX2
IKZF2.p2	-2.791	IKZF2
FOXN1.p2	-2.838	FOXN1
NFE2L2.p2	-2.842	NFE2L2
CREB1.p2	-2.871	CREB1
BACH2.p2	-2.922	BACH2
CAGUGCA	-2.997
UCAAGUA	-3.166
ACAUUCA	-3.216
EGR1..3.p2	-3.218	EGR3 EGR1 EGR2
FOXD3.p2	-3.470	FOXD3
SPI1.p2	-3.503	SPI1
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-3.600	ARNT MAX MYC USF1 BHLHB2 ARNT2
ZNF143.p2	-3.662	ZNF143
GFI1.p2	-3.809	GFI1
SOX{8,9,10}.p2	-3.837	SOX9 SOX8 SOX10
ZBTB16.p2	-4.566	ZBTB16
KLF4.p3	-4.648	KLF4
EHF.p2	-5.366	EHF
ELK1,4_GABP{A,B1}.p3	-5.409	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
ELF1,2,4.p2	-5.508	ELF2 ELF1 ELF4
ATF5_CREB3.p2	-5.629	ATF5 CREB3
NKX2-2,8.p2	-5.704	NKX2-2 NKX2-8
UUUUUGC	-5.725
NRF1.p2	-5.801	NRF1
CUCCCAA	-6.087
GGAAUGU	-6.280
MAFB.p2	-6.324	MAFB
YY1.p2	-6.378	YY1
PRRX1,2.p2	-6.455	PRRX2 PRRX1
MZF1.p2	-7.425	MZF1
E2F1..5.p2	-7.600	E2F4 E2F5 E2F2 E2F1 E2F3
MYB.p2	-8.623	MYB
TFDP1.p2	-11.482	TFDP1

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Sample name: Liver

Sorted z-values for every WM.