ISMARA results: MedullaOblongata

Sample name: MedullaOblongata

Sorted Z-values histogram for the sample MedullaOblongata

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
REST.p3	9.547	REST
RFX1..5_RFXANK_RFXAP.p2	9.470	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
CUCCCAA	7.713
KLF12.p2	7.242	KLF12
TGIF1.p2	6.786	TGIF1
MYOD1.p2	6.753	MYOD1
UGUGCUU	6.668
GTF2I.p2	6.588	GTF2I
JUN.p2	6.582	JUN JUND JUNB
EGR1..3.p2	6.124	EGR3 EGR1 EGR2
HIC1.p2	5.772	HIC1
ZIC1..3.p2	5.616	ZIC1 ZIC2 ZIC3
GGCAGUG	5.578
MZF1.p2	5.501	MZF1
RREB1.p2	5.450	RREB1
HOX{A6,A7,B6,B7}.p2	5.265	HOXB6 HOXA7 HOXB7 HOXA6
MTF1.p2	5.060	MTF1
NHLH1,2.p2	4.992	NHLH1 NHLH2
TAL1_TCF{3,4,12}.p2	4.616	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
GATA1..3.p2	4.604	GATA1 GATA2 GATA3
GGCUCAG	4.448
SMAD1..7,9.p2	4.369	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
DBP.p2	4.352	DBP
FOX{I1,J2}.p2	4.302	FOXI1 FOXJ2
POU5F1.p2	4.225	POU5F1
TFCP2.p2	4.137	TFCP2
PAX2.p2	3.989	PAX2
UGCAUAG	3.917
TCF4_dimer.p2	3.865	TCF4
MEF2{A,B,C,D}.p2	3.856	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
ESRRA.p2	3.740	ESRRA
MAFB.p2	3.714	MAFB
TBX4,5.p2	3.689	TBX5 TBX4
NKX2-3_NKX2-5.p2	3.661	NKX2-5 NKX2-3
ZFP161.p2	3.649	ZFP161
CAGCAGG	3.640
LMO2.p2	3.627	LMO2
EVI1.p2	3.548	EVI1
GGAAGAC	3.524
SOX{8,9,10}.p2	3.419	SOX9 SOX8 SOX10
FOXP3.p2	3.393	FOXP3
IKZF2.p2	3.311	IKZF2
AUGGCUU	3.195
UCCCUUU	3.051
UUGGUCC	3.028
MAZ.p2	2.994	MAZ
PAX4.p2	2.778	PAX4
FEV.p2	2.710	FEV
STAT2,4,6.p2	2.678	STAT2 STAT4 STAT6
ACAUUCA	2.644
UUUUUGC	2.643
AAUACUG	2.611
HOX{A5,B5}.p2	2.510	HOXB5 HOXA5
ALX1.p2	2.501	ALX1
HBP1_HMGB_SSRP1_UBTF.p2	2.463	HMGB2 HMGB3 SSRP1 UBTF HBP1
ATF2.p2	2.420	ATF2
CCAGCAU	2.378
NR1H4.p2	2.309	NR1H4
SRY.p2	2.274	SRY
NR3C1.p2	2.256	NR3C1
UUGGCAC	2.188
AAAGUGC	2.175
AGUGCAA	2.141
EBF1.p2	2.132	EBF1
POU5F1_SOX2{dimer}.p2	2.125	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
GAGAACU	2.092
UAUUGCU	2.087
UAAGACG	2.056
FOXO1,3,4.p2	2.026	FOXO1 FOXO4 FOXO3
HAND1,2.p2	1.993	HAND1 HAND2
GUGCAAA	1.986
AUUGCAC	1.916
TLX1..3_NFIC{dimer}.p2	1.894	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
GTF2A1,2.p2	1.891	GTF2A1 GTF2A2
GUCAGUU	1.817
GCUGGUG	1.807
UGAAAUG	1.803
SPZ1.p2	1.784	SPZ1
STAT1,3.p3	1.754	STAT1 STAT3
NFIL3.p2	1.740	NFIL3
NANOG{mouse}.p2	1.738	NANOG
ZBTB6.p2	1.716	ZBTB6
SOX2.p2	1.696	SOX2
GFI1.p2	1.682	GFI1
CACAGUG	1.639
LEF1_TCF7_TCF7L1,2.p2	1.625	TCF7 TCF7L2 LEF1 TCF7L1
CUACAGU	1.604
TFEB.p2	1.597	TFEB
GGCAAGA	1.596
FOX{F1,F2,J1}.p2	1.580	FOXF2 FOXJ1 FOXF1
AAGUGCU	1.552
GAUCAGA	1.541
IKZF1.p2	1.527	IKZF1
HMGA1,2.p2	1.516	HMGA1 HMGA2
PRRX1,2.p2	1.495	PRRX2 PRRX1
EWSR1-FLI1.p2	1.470	FLI1 EWSR1
SP1.p2	1.468	SP1
MYFfamily.p2	1.461	MYOD1 MYF6 MYF5 MYOG
GLI1..3.p2	1.456	GLI1 GLI2 GLI3
GUAAACA	1.396
NR5A1,2.p2	1.328	NR5A1 NR5A2
HMX1.p2	1.301	HMX1
GCUACAU	1.268
UCACAGU	1.265
AGCAGCA	1.200
RORA.p2	1.189	RORA
GAGAUGA	1.086
AACAGUC	1.076
ACUGGCC	1.072
CDC5L.p2	1.068	CDC5L
NANOG.p2	1.053	NANOG
POU1F1.p2	1.024	POU1F1
NFIX.p2	1.018	NFIX
STAT5{A,B}.p2	0.980	STAT5B STAT5A
CUX2.p2	0.972	CUX2
SNAI1..3.p2	0.925	SNAI2 SNAI1 SNAI3
FOXL1.p2	0.924	FOXL1
SREBF1,2.p2	0.923	SREBF1 SREBF2
PAX3,7.p2	0.917	PAX7 PAX3
UGCAUUG	0.871
RXR{A,B,G}.p2	0.869	RXRA RXRB RXRG
CEBPA,B_DDIT3.p2	0.859	DDIT3 CEBPA CEBPB
RUNX1..3.p2	0.819	RUNX1 RUNX3 RUNX2
UAAGACU	0.801
EN1,2.p2	0.799	EN1 EN2
PDX1.p2	0.768	PDX1
GCAGCAU	0.754
AGCUGCC	0.746
NKX3-1.p2	0.735	NKX3-1
NKX2-1,4.p2	0.733	NKX2-1 NKX2-4
NR4A2.p2	0.728	NR4A2
GZF1.p2	0.724	GZF1
RXRA_VDR{dimer}.p2	0.691	VDR	$logo of RXRA_VDR{dimer}.p2$
FOX{D1,D2}.p2	0.681	FOXD2 FOXD1
FOS_FOS{B,L1}_JUN{B,D}.p2	0.680	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
UGUGCGU	0.595
ACUGCAU	0.546
CGUGUCU	0.546
EOMES.p2	0.534	EOMES
PAX6.p2	0.517	PAX6
AAGGUGC	0.404
HNF4A_NR2F1,2.p2	0.397	NR2F1 NR2F2 HNF4A
ESR1.p2	0.368	ESR1
CTCF.p2	0.364	CTCF
LHX3,4.p2	0.352	LHX3 LHX4
NR6A1.p2	0.337	NR6A1
HOXA9_MEIS1.p2	0.321	MEIS1 HOXA9
POU3F1..4.p2	0.276	POU3F1 POU3F3 POU3F2 POU3F4
CAGUGCA	0.261
AGGUAGU	0.243
AACACUG	0.224
AR.p2	0.206	AR
AUGACAC	0.183
ZNF423.p2	0.171	ZNF423
PAX8.p2	0.142	PAX8
AGCAGCG	0.128
AAUCUCU	0.128
ZNF384.p2	0.120	ZNF384
ACCCUGU	0.113
HLF.p2	0.091	HLF
GFI1B.p2	0.084	GFI1B
GGACGGA	0.069
ETS1,2.p2	0.063	ETS2 ETS1
GAGGUAG	-0.002
UUGUUCG	-0.020
TEAD1.p2	-0.025	TEAD1 TEAD2 TEAD3 TEAD4
AIRE.p2	-0.031	AIRE
AACCGUU	-0.066
NFE2L1.p2	-0.071	NFE2L1
TLX2.p2	-0.072	TLX2
ACCCGUA	-0.073
UGACCUA	-0.077
AACGGAA	-0.095
VSX1,2.p2	-0.149	VSX2 VSX1
FOX{C1,C2}.p2	-0.166	FOXC1 FOXC2
CCCUGAG	-0.196
AACCUGG	-0.222
MSX1,2.p2	-0.224	MSX1 MSX2
CGUACCG	-0.244
MYBL2.p2	-0.245	MYBL2
GGAGUGU	-0.269
AAUCUCA	-0.297
CDX1,2,4.p2	-0.319	CDX1 CDX2 CDX4
HES1.p2	-0.321	HES1
SOX5.p2	-0.360	SOX5
NKX3-2.p2	-0.363	NKX3-2
NKX6-1,2.p2	-0.384	NKX6-1 NKX6-2
ZEB1.p2	-0.399	ZEB1
POU2F1..3.p2	-0.423	POU2F2 POU2F1 POU2F3
NFE2.p2	-0.426	NFE2
ARID5B.p2	-0.438	ARID5B
AAUGCCC	-0.575
UUGGCAA	-0.596
AUGGCAC	-0.625
TFAP2B.p2	-0.627	TFAP2B
HSF1,2.p2	-0.665	HSF1 HSF2
GAUAUGU	-0.678
NFATC1..3.p2	-0.684	NFATC3 NFATC2 NFATC1
ZNF238.p2	-0.744	ZNF238
AGCUUAU	-0.799
POU6F1.p2	-0.834	POU6F1
HOX{A4,D4}.p2	-0.919	HOXA4 HOXD4
NFE2L2.p2	-0.922	NFE2L2
RBPJ.p2	-0.967	RBPJ
UCCAGUU	-1.016
CRX.p2	-1.052	CRX
HNF1A.p2	-1.057	HNF1A
CCUUCAU	-1.092
T.p2	-1.102	T
ADNP_IRX_SIX_ZHX.p2	-1.110	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
GUAACAG	-1.116
FOXN1.p2	-1.244	FOXN1
GATA6.p2	-1.269	GATA6
TFAP2{A,C}.p2	-1.388	TFAP2C TFAP2A
NKX2-2,8.p2	-1.426	NKX2-2 NKX2-8
GUAGUGU	-1.522
AGCACCA	-1.540
DMAP1_NCOR{1,2}_SMARC.p2	-1.588	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
PRDM1.p3	-1.613	PRDM1
FOSL2.p2	-1.667	FOSL2
PAX5.p2	-1.779	PAX5
PBX1.p2	-1.799	PBX1
AGUGGUU	-1.825
ONECUT1,2.p2	-1.861	ONECUT2 ONECUT1
CCAGUGU	-1.918
UCACAUU	-1.972
ATF5_CREB3.p2	-1.977	ATF5 CREB3
AUGUGCC	-2.065
UAAUGCU	-2.080
GGAAUGU	-2.256
UCAAGUA	-2.404
ACAGUAU	-2.503
ATF6.p2	-2.515	ATF6
GAUUGUC	-2.518
ACAGUAC	-2.518
PITX1..3.p2	-2.523	PITX2 PITX3 PITX1
FOXQ1.p2	-2.715	FOXQ1
ATF4.p2	-2.825	ATF4
ZNF148.p2	-2.852	ZNF148
TBP.p2	-2.866	TBP
FOXA2.p3	-3.016	FOXA2
SRF.p3	-3.033	SRF
PPARG.p2	-3.130	PPARG
TFAP4.p2	-3.179	TFAP4
SPIB.p2	-3.210	SPIB
BACH2.p2	-3.221	BACH2
HIF1A.p2	-3.238	HIF1A
ZBTB16.p2	-3.257	ZBTB16
CREB1.p2	-3.310	CREB1
TP53.p2	-3.378	TP53
RXRG_dimer.p3	-3.410	NR1H2 RXRA PPARG PPARA RXRB RXRG
bHLH_family.p2	-3.420	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
CUUUGGU	-3.585
SOX17.p2	-3.694	SOX17
FOXD3.p2	-3.746	FOXD3
BPTF.p2	-3.890	BPTF
NFKB1_REL_RELA.p2	-3.917	RELA REL NFKB1
IRF1,2,7.p3	-3.996	IRF1 IRF2 IRF7
EP300.p2	-4.005	EP300
PATZ1.p2	-4.134	PATZ1
KLF4.p3	-4.168	KLF4
AHR_ARNT_ARNT2.p2	-4.176	ARNT AHR ARNT2
ZNF143.p2	-4.383	ZNF143
EHF.p2	-4.639	EHF
MYB.p2	-5.412	MYB
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-5.494	ARNT MAX MYC USF1 BHLHB2 ARNT2
SPI1.p2	-5.707	SPI1
NRF1.p2	-6.259	NRF1
TFDP1.p2	-6.495	TFDP1
XBP1.p3	-6.640	XBP1
AAGGCAC	-6.790
ELK1,4_GABP{A,B1}.p3	-7.299	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
E2F1..5.p2	-8.226	E2F4 E2F5 E2F2 E2F1 E2F3
ELF1,2,4.p2	-9.345	ELF2 ELF1 ELF4
YY1.p2	-10.204	YY1
NFY{A,B,C}.p2	-10.550	NFYC NFYB NFYA

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Sample name: MedullaOblongata

Sorted z-values for every WM.