ISMARA results: NCI60_1

Sample name: NCI60_1_MDA-N

Sorted Z-values histogram for the sample NCI60_1_MDA-N

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
ELK1,4_GABP{A,B1}.p3	11.521	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
NRF1.p2	9.413	NRF1
E2F1..5.p2	8.092	E2F4 E2F5 E2F2 E2F1 E2F3
ZNF143.p2	7.760	ZNF143
YY1.p2	7.217	YY1
ELF1,2,4.p2	6.804	ELF2 ELF1 ELF4
TFDP1.p2	5.660	TFDP1
NFY{A,B,C}.p2	5.589	NFYC NFYB NFYA
MYB.p2	5.522	MYB
XBP1.p3	4.620	XBP1
GGAAUGU	4.217
ATF5_CREB3.p2	4.188	ATF5 CREB3
bHLH_family.p2	3.963	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
AAGGCAC	3.778
HIF1A.p2	3.591	HIF1A
EHF.p2	3.435	EHF
PAX5.p2	3.382	PAX5
AHR_ARNT_ARNT2.p2	3.265	ARNT AHR ARNT2
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	3.241	ARNT MAX MYC USF1 BHLHB2 ARNT2
GUAGUGU	2.950
SP1.p2	2.764	SP1
PBX1.p2	2.724	PBX1
ATF4.p2	2.676	ATF4
BPTF.p2	2.631	BPTF
HES1.p2	2.597	HES1
SPI1.p2	2.510	SPI1
GFI1.p2	2.292	GFI1
HOX{A4,D4}.p2	2.246	HOXA4 HOXD4
ESRRA.p2	2.244	ESRRA
AACACUG	2.210
FOXD3.p2	2.164	FOXD3
BACH2.p2	2.026	BACH2
KLF4.p3	1.993	KLF4
ARID5B.p2	1.940	ARID5B
SOX17.p2	1.858	SOX17
ONECUT1,2.p2	1.832	ONECUT2 ONECUT1
MSX1,2.p2	1.776	MSX1 MSX2
TFAP2B.p2	1.701	TFAP2B
NFE2L1.p2	1.659	NFE2L1
ACAGUAC	1.634
AGUGGUU	1.601
NANOG.p2	1.521	NANOG
TP53.p2	1.470	TP53
NKX6-1,2.p2	1.464	NKX6-1 NKX6-2
UCAAGUA	1.403
HMGA1,2.p2	1.326	HMGA1 HMGA2
GUAACAG	1.257
NKX3-1.p2	1.166	NKX3-1
MAFB.p2	1.162	MAFB
UUGGCAA	1.157
ZBTB16.p2	1.151	ZBTB16
RXRG_dimer.p3	1.124	NR1H2 RXRA PPARG PPARA RXRB RXRG
NR5A1,2.p2	1.007	NR5A1 NR5A2
EWSR1-FLI1.p2	1.003	FLI1 EWSR1
NKX2-2,8.p2	0.973	NKX2-2 NKX2-8
HOX{A6,A7,B6,B7}.p2	0.944	HOXB6 HOXA7 HOXB7 HOXA6
GCUGGUG	0.849
CUACAGU	0.843
NFE2L2.p2	0.842	NFE2L2
CTCF.p2	0.827	CTCF
UCACAUU	0.804
GUGCAAA	0.804
PRDM1.p3	0.760	PRDM1
GGCAAGA	0.746
SREBF1,2.p2	0.741	SREBF1 SREBF2
FOXN1.p2	0.735	FOXN1
UCCAGUU	0.697
GGAGUGU	0.686
SPIB.p2	0.618	SPIB
CCUUCAU	0.616
CUUUGGU	0.604
NFE2.p2	0.587	NFE2
GFI1B.p2	0.569	GFI1B
LHX3,4.p2	0.519	LHX3 LHX4
CREB1.p2	0.514	CREB1
AAGGUGC	0.509
AGCUUAU	0.497
AACCUGG	0.470
PAX6.p2	0.429	PAX6
AUGGCAC	0.428
ACAGUAU	0.416
EP300.p2	0.415	EP300
AGGUAGU	0.415
SPZ1.p2	0.409	SPZ1
CRX.p2	0.389	CRX
CCAGUGU	0.369
AAUCUCA	0.336
IKZF2.p2	0.318	IKZF2
GCAGCAU	0.312
AACCGUU	0.307
NKX3-2.p2	0.306	NKX3-2
UUGGUCC	0.299
GZF1.p2	0.288	GZF1
FOS_FOS{B,L1}_JUN{B,D}.p2	0.282	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
TFEB.p2	0.259	TFEB
PATZ1.p2	0.235	PATZ1
NFATC1..3.p2	0.215	NFATC3 NFATC2 NFATC1
SOX{8,9,10}.p2	0.203	SOX9 SOX8 SOX10
ACUGGCC	0.201
UGAAAUG	0.188
AAUGCCC	0.174
FOX{I1,J2}.p2	0.169	FOXI1 FOXJ2
AAUACUG	0.144
GAUUGUC	0.136
AACAGUC	0.122
ZNF423.p2	0.120	ZNF423
PRRX1,2.p2	0.115	PRRX2 PRRX1
ACCCGUA	0.077
UAAGACG	0.073
SOX2.p2	0.067	SOX2
NR6A1.p2	0.002	NR6A1
AUGACAC	-0.015
UGACCUA	-0.016
AAUCUCU	-0.048
AUGUGCC	-0.059
CAGUGCA	-0.060
RBPJ.p2	-0.060	RBPJ
SRY.p2	-0.080	SRY
PAX8.p2	-0.090	PAX8
SRF.p3	-0.092	SRF
UAUUGCU	-0.103
TFAP4.p2	-0.139	TFAP4
IKZF1.p2	-0.141	IKZF1
DBP.p2	-0.188	DBP
GAGGUAG	-0.231
UGUGCGU	-0.231
ACUGCAU	-0.239
DMAP1_NCOR{1,2}_SMARC.p2	-0.240	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
MYBL2.p2	-0.243	MYBL2
FOXQ1.p2	-0.297	FOXQ1
AUGGCUU	-0.306
RXR{A,B,G}.p2	-0.307	RXRA RXRB RXRG
GAUCAGA	-0.310
GAUAUGU	-0.315
T.p2	-0.318	T
UUGGCAC	-0.336
UAAUGCU	-0.345
AACGGAA	-0.364
VSX1,2.p2	-0.386	VSX2 VSX1
PAX2.p2	-0.390	PAX2
PAX3,7.p2	-0.402	PAX7 PAX3
GCUACAU	-0.404
PDX1.p2	-0.423	PDX1
CDC5L.p2	-0.429	CDC5L
FOXA2.p3	-0.449	FOXA2
CCAGCAU	-0.461
CUX2.p2	-0.472	CUX2
NFIL3.p2	-0.482	NFIL3
HOXA9_MEIS1.p2	-0.491	MEIS1 HOXA9
EOMES.p2	-0.545	EOMES
ZNF384.p2	-0.558	ZNF384
UAAGACU	-0.574
ZNF148.p2	-0.575	ZNF148
NR3C1.p2	-0.580	NR3C1
AGUGCAA	-0.584
LEF1_TCF7_TCF7L1,2.p2	-0.594	TCF7 TCF7L2 LEF1 TCF7L1
GGACGGA	-0.594
ATF2.p2	-0.641	ATF2
FOXO1,3,4.p2	-0.646	FOXO1 FOXO4 FOXO3
POU6F1.p2	-0.651	POU6F1
ACCCUGU	-0.657
ESR1.p2	-0.662	ESR1
CGUACCG	-0.673
AGCAGCG	-0.683
FEV.p2	-0.684	FEV
ADNP_IRX_SIX_ZHX.p2	-0.685	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
GUCAGUU	-0.694
UCACAGU	-0.702
HMX1.p2	-0.702	HMX1
HBP1_HMGB_SSRP1_UBTF.p2	-0.724	HMGB2 HMGB3 SSRP1 UBTF HBP1
UGUGCUU	-0.729
AGCAGCA	-0.776
POU3F1..4.p2	-0.780	POU3F1 POU3F3 POU3F2 POU3F4
UGCAUUG	-0.785
TAL1_TCF{3,4,12}.p2	-0.785	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
GUAAACA	-0.792
FOSL2.p2	-0.812	FOSL2
STAT5{A,B}.p2	-0.861	STAT5B STAT5A
NHLH1,2.p2	-0.883	NHLH1 NHLH2
CGUGUCU	-0.894
CCCUGAG	-0.951
ATF6.p2	-0.957	ATF6
AAGUGCU	-0.980
FOXP3.p2	-0.987	FOXP3
GGCAGUG	-1.005
ZNF238.p2	-1.011	ZNF238
RORA.p2	-1.049	RORA
ACAUUCA	-1.078
TCF4_dimer.p2	-1.082	TCF4
AGCACCA	-1.093
IRF1,2,7.p3	-1.141	IRF1 IRF2 IRF7
GAGAACU	-1.159
NFIX.p2	-1.169	NFIX
TLX2.p2	-1.181	TLX2
ZIC1..3.p2	-1.186	ZIC1 ZIC2 ZIC3
NR4A2.p2	-1.212	NR4A2
AUUGCAC	-1.232
AAAGUGC	-1.306
ZBTB6.p2	-1.315	ZBTB6
UGCAUAG	-1.372
HLF.p2	-1.437	HLF
GGAAGAC	-1.465
FOX{F1,F2,J1}.p2	-1.466	FOXF2 FOXJ1 FOXF1
STAT2,4,6.p2	-1.490	STAT2 STAT4 STAT6
UCCCUUU	-1.517
SOX5.p2	-1.524	SOX5
POU5F1_SOX2{dimer}.p2	-1.526	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
ALX1.p2	-1.561	ALX1
PAX4.p2	-1.587	PAX4
NKX2-1,4.p2	-1.615	NKX2-1 NKX2-4
NKX2-3_NKX2-5.p2	-1.645	NKX2-5 NKX2-3
FOX{D1,D2}.p2	-1.657	FOXD2 FOXD1
HNF4A_NR2F1,2.p2	-1.670	NR2F1 NR2F2 HNF4A
AGCUGCC	-1.676
TFAP2{A,C}.p2	-1.719	TFAP2C TFAP2A
CEBPA,B_DDIT3.p2	-1.739	DDIT3 CEBPA CEBPB
AR.p2	-1.765	AR
HIC1.p2	-1.780	HIC1
PPARG.p2	-1.786	PPARG
UUGUUCG	-1.790
PITX1..3.p2	-1.833	PITX2 PITX3 PITX1
FOX{C1,C2}.p2	-1.841	FOXC1 FOXC2
AIRE.p2	-1.854	AIRE
TEAD1.p2	-1.877	TEAD1 TEAD2 TEAD3 TEAD4
RXRA_VDR{dimer}.p2	-1.881	VDR	$logo of RXRA_VDR{dimer}.p2$
HSF1,2.p2	-1.945	HSF1 HSF2
ZEB1.p2	-1.955	ZEB1
FOXL1.p2	-2.039	FOXL1
HOX{A5,B5}.p2	-2.043	HOXB5 HOXA5
NR1H4.p2	-2.050	NR1H4
MEF2{A,B,C,D}.p2	-2.095	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
NANOG{mouse}.p2	-2.175	NANOG
CDX1,2,4.p2	-2.226	CDX1 CDX2 CDX4
POU1F1.p2	-2.324	POU1F1
GTF2A1,2.p2	-2.332	GTF2A1 GTF2A2
STAT1,3.p3	-2.359	STAT1 STAT3
UUUUUGC	-2.365
GATA1..3.p2	-2.538	GATA1 GATA2 GATA3
RREB1.p2	-2.624	RREB1
GAGAUGA	-2.650
LMO2.p2	-2.684	LMO2
EBF1.p2	-2.693	EBF1
MAZ.p2	-2.801	MAZ
TLX1..3_NFIC{dimer}.p2	-2.811	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
GLI1..3.p2	-2.878	GLI1 GLI2 GLI3
RFX1..5_RFXANK_RFXAP.p2	-2.892	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
RUNX1..3.p2	-2.907	RUNX1 RUNX3 RUNX2
HNF1A.p2	-2.940	HNF1A
JUN.p2	-2.962	JUN JUND JUNB
CAGCAGG	-3.010
EGR1..3.p2	-3.040	EGR3 EGR1 EGR2
GATA6.p2	-3.045	GATA6
POU2F1..3.p2	-3.099	POU2F2 POU2F1 POU2F3
EN1,2.p2	-3.102	EN1 EN2
NFKB1_REL_RELA.p2	-3.135	RELA REL NFKB1
ZFP161.p2	-3.157	ZFP161
MTF1.p2	-3.182	MTF1
REST.p3	-3.242	REST
GGCUCAG	-3.272
MZF1.p2	-3.304	MZF1
GTF2I.p2	-3.412	GTF2I
CACAGUG	-3.442
ETS1,2.p2	-3.517	ETS2 ETS1
HAND1,2.p2	-3.605	HAND1 HAND2
TGIF1.p2	-3.677	TGIF1
MYOD1.p2	-3.741	MYOD1
EVI1.p2	-3.772	EVI1
KLF12.p2	-3.950	KLF12
TBX4,5.p2	-4.107	TBX5 TBX4
MYFfamily.p2	-4.369	MYOD1 MYF6 MYF5 MYOG
POU5F1.p2	-4.443	POU5F1
SMAD1..7,9.p2	-5.015	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
SNAI1..3.p2	-5.144	SNAI2 SNAI1 SNAI3
TFCP2.p2	-5.164	TFCP2
TBP.p2	-6.682	TBP
CUCCCAA	-6.726

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Sample name: NCI60_1_MDA-N

Sorted z-values for every WM.