ISMARA results: TestisSeminiferousTubule

Sample name: TestisSeminiferousTubule

Sorted Z-values histogram for the sample TestisSeminiferousTubule

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
RFX1..5_RFXANK_RFXAP.p2	9.303	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
CUCCCAA	6.858
MYB.p2	6.378	MYB
PITX1..3.p2	6.323	PITX2 PITX3 PITX1
JUN.p2	5.102	JUN JUND JUNB
KLF12.p2	4.999	KLF12
RXR{A,B,G}.p2	4.214	RXRA RXRB RXRG
EN1,2.p2	4.055	EN1 EN2
ATF6.p2	3.960	ATF6
UUUUUGC	3.876
ALX1.p2	3.806	ALX1
TFAP2{A,C}.p2	3.590	TFAP2C TFAP2A
GGCUCAG	3.436
RBPJ.p2	3.202	RBPJ
GATA6.p2	2.994	GATA6
EVI1.p2	2.907	EVI1
NR1H4.p2	2.856	NR1H4
TBX4,5.p2	2.829	TBX5 TBX4
RREB1.p2	2.760	RREB1
NKX2-1,4.p2	2.747	NKX2-1 NKX2-4
AAAGUGC	2.711
HLF.p2	2.671	HLF
STAT1,3.p3	2.631	STAT1 STAT3
HAND1,2.p2	2.498	HAND1 HAND2
FOXQ1.p2	2.393	FOXQ1
ZIC1..3.p2	2.350	ZIC1 ZIC2 ZIC3
POU6F1.p2	2.322	POU6F1
MZF1.p2	2.284	MZF1
MYOD1.p2	2.238	MYOD1
TCF4_dimer.p2	2.176	TCF4
NKX2-3_NKX2-5.p2	2.140	NKX2-5 NKX2-3
SNAI1..3.p2	2.074	SNAI2 SNAI1 SNAI3
FOXP3.p2	1.959	FOXP3
AGCAGCA	1.839
POU1F1.p2	1.831	POU1F1
MYBL2.p2	1.793	MYBL2
CDX1,2,4.p2	1.767	CDX1 CDX2 CDX4
NFIL3.p2	1.693	NFIL3
AGCACCA	1.683
AAGGUGC	1.665
NANOG{mouse}.p2	1.657	NANOG
RXRA_VDR{dimer}.p2	1.628	VDR	$logo of RXRA_VDR{dimer}.p2$
FOXO1,3,4.p2	1.618	FOXO1 FOXO4 FOXO3
SMAD1..7,9.p2	1.589	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
IKZF2.p2	1.557	IKZF2
ACCCUGU	1.555
CACAGUG	1.533
TEAD1.p2	1.524	TEAD1 TEAD2 TEAD3 TEAD4
GAUUGUC	1.502
UAAGACU	1.441
MAZ.p2	1.383	MAZ
REST.p3	1.351	REST
HOX{A5,B5}.p2	1.339	HOXB5 HOXA5
T.p2	1.336	T
LMO2.p2	1.332	LMO2
UAAUGCU	1.330
CREB1.p2	1.271	CREB1
NANOG.p2	1.269	NANOG
UUGUUCG	1.252
AGCUGCC	1.228
PAX5.p2	1.221	PAX5
GAGAACU	1.186
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	1.157	ARNT MAX MYC USF1 BHLHB2 ARNT2
TFAP4.p2	1.153	TFAP4
UGUGCUU	1.150
SOX5.p2	1.132	SOX5
CCAGUGU	1.130
ZBTB16.p2	1.067	ZBTB16
TFCP2.p2	1.054	TFCP2
FOX{C1,C2}.p2	0.945	FOXC1 FOXC2
CGUGUCU	0.922
FOXN1.p2	0.894	FOXN1
KLF4.p3	0.872	KLF4
UAUUGCU	0.854
NR3C1.p2	0.853	NR3C1
RORA.p2	0.806	RORA
HMGA1,2.p2	0.752	HMGA1 HMGA2
PAX6.p2	0.733	PAX6
SRF.p3	0.718	SRF
FOS_FOS{B,L1}_JUN{B,D}.p2	0.693	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
NRF1.p2	0.685	NRF1
CAGUGCA	0.679
FOX{D1,D2}.p2	0.655	FOXD2 FOXD1
HNF1A.p2	0.643	HNF1A
CGUACCG	0.609
SOX17.p2	0.571	SOX17
POU2F1..3.p2	0.563	POU2F2 POU2F1 POU2F3
EGR1..3.p2	0.540	EGR3 EGR1 EGR2
NR5A1,2.p2	0.540	NR5A1 NR5A2
AGCAGCG	0.518
GAGGUAG	0.510
POU3F1..4.p2	0.487	POU3F1 POU3F3 POU3F2 POU3F4
CRX.p2	0.455	CRX
CAGCAGG	0.442
PAX8.p2	0.435	PAX8
CUACAGU	0.425
PBX1.p2	0.407	PBX1
SRY.p2	0.400	SRY
AAUCUCU	0.355
PATZ1.p2	0.303	PATZ1
NKX2-2,8.p2	0.284	NKX2-2 NKX2-8
GAGAUGA	0.271
HIC1.p2	0.270	HIC1
GTF2A1,2.p2	0.251	GTF2A1 GTF2A2
ZNF384.p2	0.242	ZNF384
AGCUUAU	0.214
ZNF423.p2	0.214	ZNF423
AUGACAC	0.188
UAAGACG	0.166
GGCAAGA	0.133
FOXL1.p2	0.132	FOXL1
ACUGCAU	0.130
UCCCUUU	0.102
GUAACAG	0.097
MSX1,2.p2	0.091	MSX1 MSX2
AUGGCUU	0.088
AUGUGCC	0.076
UGUGCGU	0.074
GGACGGA	0.058
PAX2.p2	0.054	PAX2
HOXA9_MEIS1.p2	0.051	MEIS1 HOXA9
ACAUUCA	0.050
DBP.p2	0.046	DBP
FOX{F1,F2,J1}.p2	0.021	FOXF2 FOXJ1 FOXF1
TLX1..3_NFIC{dimer}.p2	0.011	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
ACCCGUA	0.010
ARID5B.p2	0.009	ARID5B
MEF2{A,B,C,D}.p2	-0.051	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
SOX2.p2	-0.064	SOX2
ACAGUAC	-0.071
GAUAUGU	-0.093
LEF1_TCF7_TCF7L1,2.p2	-0.105	TCF7 TCF7L2 LEF1 TCF7L1
GUAAACA	-0.109
SREBF1,2.p2	-0.140	SREBF1 SREBF2
HBP1_HMGB_SSRP1_UBTF.p2	-0.169	HMGB2 HMGB3 SSRP1 UBTF HBP1
UGCAUUG	-0.169
LHX3,4.p2	-0.199	LHX3 LHX4
AACACUG	-0.203
EBF1.p2	-0.204	EBF1
AIRE.p2	-0.211	AIRE
PAX3,7.p2	-0.220	PAX7 PAX3
GZF1.p2	-0.233	GZF1
PDX1.p2	-0.253	PDX1
UUGGCAA	-0.264
AACGGAA	-0.265
VSX1,2.p2	-0.298	VSX2 VSX1
ACUGGCC	-0.299
EHF.p2	-0.304	EHF
ELK1,4_GABP{A,B1}.p3	-0.314	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
ZNF143.p2	-0.326	ZNF143
NFE2L2.p2	-0.328	NFE2L2
NKX6-1,2.p2	-0.332	NKX6-1 NKX6-2
HES1.p2	-0.334	HES1
UGCAUAG	-0.339
ONECUT1,2.p2	-0.349	ONECUT2 ONECUT1
TAL1_TCF{3,4,12}.p2	-0.366	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
FEV.p2	-0.372	FEV
UGAAAUG	-0.374
AACCGUU	-0.378
ACAGUAU	-0.380
UGACCUA	-0.386
GAUCAGA	-0.387
STAT5{A,B}.p2	-0.391	STAT5B STAT5A
AGUGCAA	-0.437
AAGUGCU	-0.442
AACCUGG	-0.478
GATA1..3.p2	-0.483	GATA1 GATA2 GATA3
MTF1.p2	-0.505	MTF1
FOX{I1,J2}.p2	-0.509	FOXI1 FOXJ2
AAUCUCA	-0.520
HSF1,2.p2	-0.534	HSF1 HSF2
NKX3-1.p2	-0.648	NKX3-1
AAUACUG	-0.648
RXRG_dimer.p3	-0.656	NR1H2 RXRA PPARG PPARA RXRB RXRG
GCUGGUG	-0.657
AAUGCCC	-0.662
CCCUGAG	-0.682
SPZ1.p2	-0.688	SPZ1
TFDP1.p2	-0.690	TFDP1
PAX4.p2	-0.716	PAX4
GUGCAAA	-0.739
UUGGCAC	-0.743
GLI1..3.p2	-0.746	GLI1 GLI2 GLI3
GUCAGUU	-0.759
CCAGCAU	-0.761
CUUUGGU	-0.782
EOMES.p2	-0.785	EOMES
UCACAGU	-0.785
CDC5L.p2	-0.800	CDC5L
AUUGCAC	-0.804
TLX2.p2	-0.831	TLX2
TGIF1.p2	-0.864	TGIF1
AGGUAGU	-0.871
CCUUCAU	-0.904
CUX2.p2	-0.918	CUX2
RUNX1..3.p2	-0.923	RUNX1 RUNX3 RUNX2
NR6A1.p2	-0.972	NR6A1
SOX{8,9,10}.p2	-0.979	SOX9 SOX8 SOX10
AR.p2	-1.036	AR
UUGGUCC	-1.050
UCAAGUA	-1.060
AACAGUC	-1.125
GFI1.p2	-1.179	GFI1
NHLH1,2.p2	-1.180	NHLH1 NHLH2
HOX{A4,D4}.p2	-1.243	HOXA4 HOXD4
GGAGUGU	-1.257
HOX{A6,A7,B6,B7}.p2	-1.259	HOXB6 HOXA7 HOXB7 HOXA6
FOSL2.p2	-1.305	FOSL2
FOXA2.p3	-1.327	FOXA2
GCUACAU	-1.443
GGAAGAC	-1.481
NFE2.p2	-1.546	NFE2
DMAP1_NCOR{1,2}_SMARC.p2	-1.595	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
HMX1.p2	-1.603	HMX1
NFATC1..3.p2	-1.605	NFATC3 NFATC2 NFATC1
GUAGUGU	-1.625
POU5F1_SOX2{dimer}.p2	-1.628	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
NR4A2.p2	-1.650	NR4A2
ADNP_IRX_SIX_ZHX.p2	-1.670	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
EWSR1-FLI1.p2	-1.723	FLI1 EWSR1
UCCAGUU	-1.732
PRRX1,2.p2	-1.741	PRRX2 PRRX1
POU5F1.p2	-1.755	POU5F1
E2F1..5.p2	-1.773	E2F4 E2F5 E2F2 E2F1 E2F3
TBP.p2	-1.777	TBP
CEBPA,B_DDIT3.p2	-1.793	DDIT3 CEBPA CEBPB
NFE2L1.p2	-1.817	NFE2L1
MYFfamily.p2	-1.825	MYOD1 MYF6 MYF5 MYOG
ATF2.p2	-1.826	ATF2
ZBTB6.p2	-1.917	ZBTB6
UCACAUU	-1.935
GTF2I.p2	-1.938	GTF2I
NFY{A,B,C}.p2	-1.942	NFYC NFYB NFYA
IKZF1.p2	-1.955	IKZF1
NFIX.p2	-1.959	NFIX
HNF4A_NR2F1,2.p2	-2.066	NR2F1 NR2F2 HNF4A
ZNF238.p2	-2.092	ZNF238
GFI1B.p2	-2.111	GFI1B
AAGGCAC	-2.143
GGCAGUG	-2.193
SP1.p2	-2.199	SP1
PPARG.p2	-2.209	PPARG
EP300.p2	-2.246	EP300
NFKB1_REL_RELA.p2	-2.310	RELA REL NFKB1
AUGGCAC	-2.313
AGUGGUU	-2.360
ZNF148.p2	-2.379	ZNF148
GCAGCAU	-2.387
STAT2,4,6.p2	-2.437	STAT2 STAT4 STAT6
ETS1,2.p2	-2.584	ETS2 ETS1
ZEB1.p2	-2.651	ZEB1
ESR1.p2	-2.714	ESR1
MAFB.p2	-2.766	MAFB
TFEB.p2	-2.810	TFEB
CTCF.p2	-3.019	CTCF
FOXD3.p2	-3.131	FOXD3
PRDM1.p3	-3.263	PRDM1
YY1.p2	-3.305	YY1
BPTF.p2	-3.465	BPTF
XBP1.p3	-3.510	XBP1
TFAP2B.p2	-3.513	TFAP2B
TP53.p2	-3.659	TP53
ZFP161.p2	-3.994	ZFP161
IRF1,2,7.p3	-4.176	IRF1 IRF2 IRF7
SPIB.p2	-4.487	SPIB
HIF1A.p2	-4.532	HIF1A
NKX3-2.p2	-4.573	NKX3-2
BACH2.p2	-4.666	BACH2
ESRRA.p2	-4.754	ESRRA
SPI1.p2	-5.004	SPI1
ATF5_CREB3.p2	-5.092	ATF5 CREB3
AHR_ARNT_ARNT2.p2	-5.167	ARNT AHR ARNT2
ATF4.p2	-5.185	ATF4
GGAAUGU	-5.577
bHLH_family.p2	-6.161	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
ELF1,2,4.p2	-6.507	ELF2 ELF1 ELF4

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Sample name: TestisSeminiferousTubule

Sorted z-values for every WM.