ISMARA results: Thalamus

Sample name: Thalamus

Sorted Z-values histogram for the sample Thalamus

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
REST.p3	9.695	REST
RFX1..5_RFXANK_RFXAP.p2	8.772	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
HIC1.p2	6.801	HIC1
KLF12.p2	6.650	KLF12
JUN.p2	5.521	JUN JUND JUNB
MYOD1.p2	5.430	MYOD1
CUCCCAA	5.398
MTF1.p2	5.245	MTF1
RREB1.p2	5.180	RREB1
TFCP2.p2	5.164	TFCP2
ATF2.p2	5.092	ATF2
TGIF1.p2	5.006	TGIF1
TCF4_dimer.p2	4.935	TCF4
UGUGCUU	4.872
ZFP161.p2	4.869	ZFP161
SMAD1..7,9.p2	4.842	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
CAGCAGG	4.840
ZIC1..3.p2	4.700	ZIC1 ZIC2 ZIC3
NHLH1,2.p2	4.606	NHLH1 NHLH2
GGCAGUG	4.500
TAL1_TCF{3,4,12}.p2	4.406	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
MEF2{A,B,C,D}.p2	4.370	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
ESRRA.p2	4.342	ESRRA
GATA1..3.p2	4.257	GATA1 GATA2 GATA3
HOX{A5,B5}.p2	4.102	HOXB5 HOXA5
EBF1.p2	3.976	EBF1
FOX{I1,J2}.p2	3.782	FOXI1 FOXJ2
MAFB.p2	3.753	MAFB
EVI1.p2	3.722	EVI1
RXR{A,B,G}.p2	3.689	RXRA RXRB RXRG
GGCUCAG	3.566
HAND1,2.p2	3.500	HAND1 HAND2
PAX2.p2	3.460	PAX2
LMO2.p2	3.415	LMO2
GTF2I.p2	3.314	GTF2I
SOX{8,9,10}.p2	3.246	SOX9 SOX8 SOX10
PAX4.p2	3.145	PAX4
NR5A1,2.p2	3.081	NR5A1 NR5A2
UUGGUCC	3.003
HNF4A_NR2F1,2.p2	2.915	NR2F1 NR2F2 HNF4A
ZBTB6.p2	2.802	ZBTB6
UUGGCAC	2.791
DBP.p2	2.786	DBP
CACAGUG	2.774
SOX2.p2	2.749	SOX2
MZF1.p2	2.729	MZF1
FEV.p2	2.691	FEV
SRY.p2	2.655	SRY
AUGGCUU	2.651
NFIX.p2	2.634	NFIX
SP1.p2	2.577	SP1
NR4A2.p2	2.576	NR4A2
FOXP3.p2	2.576	FOXP3
TBX4,5.p2	2.525	TBX5 TBX4
EN1,2.p2	2.409	EN1 EN2
UGCAUAG	2.373
GTF2A1,2.p2	2.358	GTF2A1 GTF2A2
AUUGCAC	2.326
HOX{A6,A7,B6,B7}.p2	2.236	HOXB6 HOXA7 HOXB7 HOXA6
UAUUGCU	2.231
NKX2-3_NKX2-5.p2	2.226	NKX2-5 NKX2-3
TLX1..3_NFIC{dimer}.p2	2.186	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
UAAGACG	2.141
TFEB.p2	2.079	TFEB
SPZ1.p2	2.023	SPZ1
AGCAGCA	1.968
FOXO1,3,4.p2	1.968	FOXO1 FOXO4 FOXO3
GUGCAAA	1.925
ESR1.p2	1.887	ESR1
IKZF1.p2	1.867	IKZF1
EGR1..3.p2	1.779	EGR3 EGR1 EGR2
STAT2,4,6.p2	1.752	STAT2 STAT4 STAT6
IKZF2.p2	1.742	IKZF2
UCCCUUU	1.724
AGUGCAA	1.702
EWSR1-FLI1.p2	1.656	FLI1 EWSR1
MYFfamily.p2	1.638	MYOD1 MYF6 MYF5 MYOG
STAT1,3.p3	1.610	STAT1 STAT3
MSX1,2.p2	1.610	MSX1 MSX2
NR1H4.p2	1.589	NR1H4
AAAGUGC	1.575
GUCAGUU	1.464
POU5F1.p2	1.377	POU5F1
AAGUGCU	1.310
HMX1.p2	1.269	HMX1
PAX6.p2	1.237	PAX6
GLI1..3.p2	1.226	GLI1 GLI2 GLI3
GAGAACU	1.169
CGUACCG	1.165
NKX3-1.p2	1.150	NKX3-1
CUACAGU	1.137
GGCAAGA	1.133
CGUGUCU	1.118
CCAGCAU	1.101
GCUACAU	1.079
CEBPA,B_DDIT3.p2	1.075	DDIT3 CEBPA CEBPB
UAAGACU	1.042
RORA.p2	1.038	RORA
POU6F1.p2	1.001	POU6F1
ZNF384.p2	0.996	ZNF384
GAUCAGA	0.938
RXRA_VDR{dimer}.p2	0.929	VDR	$logo of RXRA_VDR{dimer}.p2$
UGCAUUG	0.920
AGCUGCC	0.911
AAUACUG	0.893
GAGAUGA	0.858
CRX.p2	0.848	CRX
CUX2.p2	0.831	CUX2
CAGUGCA	0.818
HSF1,2.p2	0.793	HSF1 HSF2
SREBF1,2.p2	0.788	SREBF1 SREBF2
GGAAGAC	0.768
TBP.p2	0.767	TBP
CTCF.p2	0.766	CTCF
CCCUGAG	0.723
POU5F1_SOX2{dimer}.p2	0.707	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
SNAI1..3.p2	0.698	SNAI2 SNAI1 SNAI3
HMGA1,2.p2	0.696	HMGA1 HMGA2
ALX1.p2	0.673	ALX1
AACGGAA	0.668
PRRX1,2.p2	0.649	PRRX2 PRRX1
AACAGUC	0.637
PAX3,7.p2	0.635	PAX7 PAX3
ETS1,2.p2	0.620	ETS2 ETS1
RUNX1..3.p2	0.618	RUNX1 RUNX3 RUNX2
NKX2-1,4.p2	0.605	NKX2-1 NKX2-4
GFI1.p2	0.559	GFI1
NR3C1.p2	0.551	NR3C1
TEAD1.p2	0.534	TEAD1 TEAD2 TEAD3 TEAD4
ACUGGCC	0.522
POU1F1.p2	0.501	POU1F1
NANOG{mouse}.p2	0.493	NANOG
AR.p2	0.488	AR
NFIL3.p2	0.486	NFIL3
ZNF423.p2	0.484	ZNF423
AIRE.p2	0.477	AIRE
UGUGCGU	0.460
MAZ.p2	0.415	MAZ
GZF1.p2	0.413	GZF1
NFE2L1.p2	0.389	NFE2L1
NR6A1.p2	0.387	NR6A1
FOX{F1,F2,J1}.p2	0.345	FOXF2 FOXJ1 FOXF1
AACACUG	0.291
LEF1_TCF7_TCF7L1,2.p2	0.283	TCF7 TCF7L2 LEF1 TCF7L1
GGACGGA	0.178
LHX3,4.p2	0.160	LHX3 LHX4
UGAAAUG	0.131
AUGACAC	0.092
UGACCUA	0.034
GCUGGUG	0.017
CCAGUGU	-0.007
AACCGUU	-0.015
AGCAGCG	-0.037
PAX8.p2	-0.043	PAX8
NKX6-1,2.p2	-0.103	NKX6-1 NKX6-2
FOS_FOS{B,L1}_JUN{B,D}.p2	-0.108	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
ACCCGUA	-0.118
CCUUCAU	-0.120
T.p2	-0.122	T
PDX1.p2	-0.135	PDX1
FOXL1.p2	-0.154	FOXL1
NKX3-2.p2	-0.166	NKX3-2
UCACAGU	-0.171
STAT5{A,B}.p2	-0.175	STAT5B STAT5A
NFE2L2.p2	-0.177	NFE2L2
GGAGUGU	-0.180
HOXA9_MEIS1.p2	-0.201	MEIS1 HOXA9
CDC5L.p2	-0.204	CDC5L
TFAP2{A,C}.p2	-0.208	TFAP2C TFAP2A
POU3F1..4.p2	-0.211	POU3F1 POU3F3 POU3F2 POU3F4
NANOG.p2	-0.232	NANOG
CDX1,2,4.p2	-0.236	CDX1 CDX2 CDX4
HLF.p2	-0.250	HLF
TLX2.p2	-0.277	TLX2
GCAGCAU	-0.312
AAUCUCA	-0.328
ACAUUCA	-0.340
ACUGCAU	-0.399
GUAAACA	-0.437
ARID5B.p2	-0.451	ARID5B
MYBL2.p2	-0.471	MYBL2
AAGGUGC	-0.513
UUGUUCG	-0.529
AAUCUCU	-0.574
VSX1,2.p2	-0.616	VSX2 VSX1
ZEB1.p2	-0.622	ZEB1
HBP1_HMGB_SSRP1_UBTF.p2	-0.636	HMGB2 HMGB3 SSRP1 UBTF HBP1
ACCCUGU	-0.643
NFE2.p2	-0.663	NFE2
EOMES.p2	-0.665	EOMES
PATZ1.p2	-0.667	PATZ1
HES1.p2	-0.693	HES1
ADNP_IRX_SIX_ZHX.p2	-0.754	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
AAUGCCC	-0.841
FOX{D1,D2}.p2	-0.851	FOXD2 FOXD1
HOX{A4,D4}.p2	-0.856	HOXA4 HOXD4
GAUAUGU	-0.886
NKX2-2,8.p2	-0.907	NKX2-2 NKX2-8
GUAACAG	-0.908
GATA6.p2	-0.918	GATA6
FOX{C1,C2}.p2	-0.920	FOXC1 FOXC2
FOSL2.p2	-1.003	FOSL2
SOX5.p2	-1.013	SOX5
TP53.p2	-1.030	TP53
AGGUAGU	-1.043
NFATC1..3.p2	-1.053	NFATC3 NFATC2 NFATC1
UUUUUGC	-1.060
GFI1B.p2	-1.066	GFI1B
ZNF238.p2	-1.103	ZNF238
ATF4.p2	-1.157	ATF4
GAGGUAG	-1.244
HNF1A.p2	-1.290	HNF1A
AGUGGUU	-1.299
BACH2.p2	-1.389	BACH2
ACAGUAC	-1.397
AUGGCAC	-1.403
TFAP2B.p2	-1.434	TFAP2B
AACCUGG	-1.496
UCACAUU	-1.610
PBX1.p2	-1.667	PBX1
DMAP1_NCOR{1,2}_SMARC.p2	-1.670	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
PAX5.p2	-1.710	PAX5
FOXA2.p3	-1.746	FOXA2
ONECUT1,2.p2	-1.838	ONECUT2 ONECUT1
UAAUGCU	-1.839
UCCAGUU	-1.889
PPARG.p2	-1.932	PPARG
FOXQ1.p2	-1.942	FOXQ1
UUGGCAA	-1.976
KLF4.p3	-2.061	KLF4
AGCACCA	-2.154
AUGUGCC	-2.269
ACAGUAU	-2.276
POU2F1..3.p2	-2.450	POU2F2 POU2F1 POU2F3
TFAP4.p2	-2.459	TFAP4
BPTF.p2	-2.495	BPTF
GUAGUGU	-2.580
PRDM1.p3	-2.609	PRDM1
CUUUGGU	-2.631
ZNF148.p2	-2.657	ZNF148
HIF1A.p2	-2.712	HIF1A
RBPJ.p2	-2.756	RBPJ
SRF.p3	-2.815	SRF
AGCUUAU	-2.914
IRF1,2,7.p3	-2.979	IRF1 IRF2 IRF7
GAUUGUC	-3.004
ZBTB16.p2	-3.013	ZBTB16
FOXN1.p2	-3.015	FOXN1
EP300.p2	-3.019	EP300
ATF6.p2	-3.107	ATF6
GGAAUGU	-3.178
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-3.251	ARNT MAX MYC USF1 BHLHB2 ARNT2
RXRG_dimer.p3	-3.286	NR1H2 RXRA PPARG PPARA RXRB RXRG
SOX17.p2	-3.397	SOX17
XBP1.p3	-3.416	XBP1
ATF5_CREB3.p2	-3.476	ATF5 CREB3
SPIB.p2	-3.480	SPIB
PITX1..3.p2	-3.808	PITX2 PITX3 PITX1
FOXD3.p2	-3.941	FOXD3
UCAAGUA	-3.995
CREB1.p2	-4.077	CREB1
NRF1.p2	-4.100	NRF1
EHF.p2	-4.382	EHF
bHLH_family.p2	-4.549	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
ZNF143.p2	-4.837	ZNF143
AHR_ARNT_ARNT2.p2	-4.993	ARNT AHR ARNT2
NFKB1_REL_RELA.p2	-5.252	RELA REL NFKB1
ELK1,4_GABP{A,B1}.p3	-5.406	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
AAGGCAC	-6.228
MYB.p2	-6.316	MYB
SPI1.p2	-6.432	SPI1
YY1.p2	-7.049	YY1
NFY{A,B,C}.p2	-7.764	NFYC NFYB NFYA
ELF1,2,4.p2	-8.801	ELF2 ELF1 ELF4
TFDP1.p2	-9.892	TFDP1
E2F1..5.p2	-9.894	E2F4 E2F5 E2F2 E2F1 E2F3

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Sample name: Thalamus

Sorted z-values for every WM.