ISMARA results: thymus

Sample name: thymus

Sorted Z-values histogram for the sample thymus

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
POU2F1..3.p2	9.792	POU2F2 POU2F1 POU2F3
FOSL2.p2	6.712	FOSL2
POU5F1.p2	6.286	POU5F1
NFKB1_REL_RELA.p2	5.999	RELA REL NFKB1
RUNX1..3.p2	5.884	RUNX1 RUNX3 RUNX2
PITX1..3.p2	5.757	PITX2 PITX3 PITX1
NFY{A,B,C}.p2	5.693	NFYC NFYB NFYA
AR.p2	5.304	AR
TBP.p2	5.247	TBP
NR3C1.p2	5.115	NR3C1
SPI1.p2	4.908	SPI1
SPIB.p2	4.798	SPIB
SOX17.p2	4.561	SOX17
E2F1..5.p2	4.391	E2F4 E2F5 E2F2 E2F1 E2F3
GAUUGUC	4.342
HAND1,2.p2	4.327	HAND1 HAND2
EP300.p2	4.192	EP300
YY1.p2	4.055	YY1
TFDP1.p2	3.853	TFDP1
GGCAGUG	3.779
FOX{D1,D2}.p2	3.700	FOXD2 FOXD1
ETS1,2.p2	3.677	ETS2 ETS1
MEF2{A,B,C,D}.p2	3.661	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
TGIF1.p2	3.598	TGIF1
CCCUGAG	3.550
IRF1,2,7.p3	3.548	IRF1 IRF2 IRF7
POU6F1.p2	3.517	POU6F1
FOX{C1,C2}.p2	3.404	FOXC1 FOXC2
NKX3-2.p2	3.368	NKX3-2
CAGCAGG	3.360
PAX4.p2	3.220	PAX4
AGCACCA	3.116
GGAAGAC	3.109
ZNF148.p2	3.079	ZNF148
NR1H4.p2	2.985	NR1H4
GTF2A1,2.p2	2.768	GTF2A1 GTF2A2
KLF12.p2	2.762	KLF12
UAAUGCU	2.669
TFCP2.p2	2.652	TFCP2
PRDM1.p3	2.627	PRDM1
PPARG.p2	2.624	PPARG
NFE2L2.p2	2.532	NFE2L2
DMAP1_NCOR{1,2}_SMARC.p2	2.505	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
ELF1,2,4.p2	2.332	ELF2 ELF1 ELF4
PATZ1.p2	2.217	PATZ1
NRF1.p2	2.210	NRF1
AIRE.p2	2.177	AIRE
CUX2.p2	2.129	CUX2
SOX2.p2	2.126	SOX2
CREB1.p2	2.103	CREB1
HBP1_HMGB_SSRP1_UBTF.p2	2.103	HMGB2 HMGB3 SSRP1 UBTF HBP1
POU1F1.p2	2.074	POU1F1
LMO2.p2	1.982	LMO2
ADNP_IRX_SIX_ZHX.p2	1.900	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
GLI1..3.p2	1.820	GLI1 GLI2 GLI3
RREB1.p2	1.772	RREB1
CTCF.p2	1.707	CTCF
HNF4A_NR2F1,2.p2	1.705	NR2F1 NR2F2 HNF4A
T.p2	1.692	T
RORA.p2	1.679	RORA
CUCCCAA	1.664
FOX{I1,J2}.p2	1.640	FOXI1 FOXJ2
LHX3,4.p2	1.607	LHX3 LHX4
AGCUGCC	1.448
AGCUUAU	1.444
TFEB.p2	1.441	TFEB
EN1,2.p2	1.434	EN1 EN2
GGCUCAG	1.430
UAUUGCU	1.372
RXRA_VDR{dimer}.p2	1.360	VDR	$logo of RXRA_VDR{dimer}.p2$
MYFfamily.p2	1.350	MYOD1 MYF6 MYF5 MYOG
ZEB1.p2	1.337	ZEB1
NKX2-2,8.p2	1.276	NKX2-2 NKX2-8
ZFP161.p2	1.232	ZFP161
GAGAUGA	1.144
HMX1.p2	1.108	HMX1
NR6A1.p2	1.037	NR6A1
ZNF423.p2	1.035	ZNF423
SREBF1,2.p2	1.022	SREBF1 SREBF2
ZNF384.p2	1.021	ZNF384
GGACGGA	0.993
ZNF238.p2	0.993	ZNF238
MZF1.p2	0.983	MZF1
GCUACAU	0.947
EOMES.p2	0.941	EOMES
GATA1..3.p2	0.937	GATA1 GATA2 GATA3
AGUGGUU	0.918
POU5F1_SOX2{dimer}.p2	0.866	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
CDC5L.p2	0.866	CDC5L
TAL1_TCF{3,4,12}.p2	0.858	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
MTF1.p2	0.847	MTF1
UUGGCAC	0.844
AAAGUGC	0.757
CCAGCAU	0.730
AAGGUGC	0.696
AGCAGCG	0.691
TCF4_dimer.p2	0.648	TCF4
NANOG.p2	0.592	NANOG
GAUCAGA	0.581
AUGGCAC	0.528
NFATC1..3.p2	0.527	NFATC3 NFATC2 NFATC1
GCUGGUG	0.474
MYOD1.p2	0.469	MYOD1
NR5A1,2.p2	0.461	NR5A1 NR5A2
UCACAUU	0.458
TP53.p2	0.414	TP53
UGCAUUG	0.408
HOXA9_MEIS1.p2	0.394	MEIS1 HOXA9
ZBTB6.p2	0.385	ZBTB6
FEV.p2	0.378	FEV
FOXP3.p2	0.374	FOXP3
EBF1.p2	0.367	EBF1
NANOG{mouse}.p2	0.358	NANOG
AAGUGCU	0.358
ELK1,4_GABP{A,B1}.p3	0.342	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
PBX1.p2	0.310	PBX1
ACAGUAU	0.300
AACCUGG	0.275
AACCGUU	0.265
AUGUGCC	0.252
SRF.p3	0.242	SRF
JUN.p2	0.237	JUN JUND JUNB
GAGGUAG	0.205
VSX1,2.p2	0.193	VSX2 VSX1
GATA6.p2	0.184	GATA6
SMAD1..7,9.p2	0.156	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
ZBTB16.p2	0.131	ZBTB16
SPZ1.p2	0.130	SPZ1
CRX.p2	0.110	CRX
FOXO1,3,4.p2	0.108	FOXO1 FOXO4 FOXO3
PAX8.p2	0.082	PAX8
ACUGCAU	0.075
UAAGACG	0.069
UGACCUA	0.064
NFIL3.p2	0.064	NFIL3
CACAGUG	0.043
UAAGACU	0.037
ONECUT1,2.p2	0.027	ONECUT2 ONECUT1
GFI1B.p2	0.026	GFI1B
ACCCGUA	0.020
TEAD1.p2	0.002	TEAD1 TEAD2 TEAD3 TEAD4
AACAGUC	-0.027
MYBL2.p2	-0.034	MYBL2
GAGAACU	-0.052
MYB.p2	-0.084	MYB
RXRG_dimer.p3	-0.096	NR1H2 RXRA PPARG PPARA RXRB RXRG
CCAGUGU	-0.099
EWSR1-FLI1.p2	-0.105	FLI1 EWSR1
NKX6-1,2.p2	-0.113	NKX6-1 NKX6-2
CGUGUCU	-0.120
GZF1.p2	-0.127	GZF1
GCAGCAU	-0.127
AAGGCAC	-0.138
HOX{A5,B5}.p2	-0.144	HOXB5 HOXA5
PAX3,7.p2	-0.151	PAX7 PAX3
ACAGUAC	-0.157
UCCCUUU	-0.193
PDX1.p2	-0.202	PDX1
TLX1..3_NFIC{dimer}.p2	-0.241	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
UGUGCGU	-0.251
BACH2.p2	-0.267	BACH2
AACGGAA	-0.291
CDX1,2,4.p2	-0.291	CDX1 CDX2 CDX4
STAT5{A,B}.p2	-0.297	STAT5B STAT5A
CGUACCG	-0.298
GGAAUGU	-0.301
IKZF2.p2	-0.303	IKZF2
ACCCUGU	-0.311
ACUGGCC	-0.378
AUGACAC	-0.401
AAUGCCC	-0.405
RXR{A,B,G}.p2	-0.420	RXRA RXRB RXRG
ZNF143.p2	-0.430	ZNF143
GGAGUGU	-0.456
GAUAUGU	-0.478
CUUUGGU	-0.480
NKX2-1,4.p2	-0.508	NKX2-1 NKX2-4
PAX6.p2	-0.517	PAX6
NFIX.p2	-0.524	NFIX
ESRRA.p2	-0.556	ESRRA
STAT1,3.p3	-0.567	STAT1 STAT3
TBX4,5.p2	-0.634	TBX5 TBX4
ATF4.p2	-0.653	ATF4
MSX1,2.p2	-0.675	MSX1 MSX2
POU3F1..4.p2	-0.676	POU3F1 POU3F3 POU3F2 POU3F4
HSF1,2.p2	-0.680	HSF1 HSF2
ALX1.p2	-0.689	ALX1
AAUCUCA	-0.720
SOX5.p2	-0.743	SOX5
CEBPA,B_DDIT3.p2	-0.761	DDIT3 CEBPA CEBPB
ARID5B.p2	-0.789	ARID5B
NFE2.p2	-0.825	NFE2
GUAACAG	-0.845
RBPJ.p2	-0.850	RBPJ
GGCAAGA	-0.909
ATF2.p2	-0.931	ATF2
UGCAUAG	-0.977
DBP.p2	-0.980	DBP
UCACAGU	-1.011
TFAP4.p2	-1.037	TFAP4
HES1.p2	-1.044	HES1
NKX2-3_NKX2-5.p2	-1.065	NKX2-5 NKX2-3
SP1.p2	-1.079	SP1
AAUCUCU	-1.092
bHLH_family.p2	-1.094	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
GUAGUGU	-1.097
FOX{F1,F2,J1}.p2	-1.115	FOXF2 FOXJ1 FOXF1
NR4A2.p2	-1.123	NR4A2
CAGUGCA	-1.132
CCUUCAU	-1.154
ESR1.p2	-1.180	ESR1
SRY.p2	-1.221	SRY
HNF1A.p2	-1.227	HNF1A
ATF6.p2	-1.234	ATF6
MAZ.p2	-1.333	MAZ
HIC1.p2	-1.433	HIC1
FOXL1.p2	-1.466	FOXL1
UUGUUCG	-1.471
NKX3-1.p2	-1.481	NKX3-1
PAX2.p2	-1.499	PAX2
HMGA1,2.p2	-1.502	HMGA1 HMGA2
UUGGUCC	-1.519
ZIC1..3.p2	-1.522	ZIC1 ZIC2 ZIC3
GUCAGUU	-1.602
FOXQ1.p2	-1.615	FOXQ1
AGGUAGU	-1.667
AGUGCAA	-1.681
CUACAGU	-1.693
FOXN1.p2	-1.728	FOXN1
AAUACUG	-1.840
UUUUUGC	-1.844
SNAI1..3.p2	-1.855	SNAI2 SNAI1 SNAI3
AHR_ARNT_ARNT2.p2	-1.859	ARNT AHR ARNT2
NHLH1,2.p2	-1.884	NHLH1 NHLH2
EVI1.p2	-1.913	EVI1
AUGGCUU	-1.939
PAX5.p2	-1.952	PAX5
IKZF1.p2	-1.960	IKZF1
UGUGCUU	-1.986
TFAP2{A,C}.p2	-2.088	TFAP2C TFAP2A
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-2.140	ARNT MAX MYC USF1 BHLHB2 ARNT2
ACAUUCA	-2.165
SOX{8,9,10}.p2	-2.255	SOX9 SOX8 SOX10
KLF4.p3	-2.258	KLF4
EGR1..3.p2	-2.263	EGR3 EGR1 EGR2
AUUGCAC	-2.351
BPTF.p2	-2.393	BPTF
LEF1_TCF7_TCF7L1,2.p2	-2.421	TCF7 TCF7L2 LEF1 TCF7L1
GFI1.p2	-2.429	GFI1
UUGGCAA	-2.477
EHF.p2	-2.479	EHF
GUGCAAA	-2.519
HLF.p2	-2.535	HLF
AACACUG	-2.576
TFAP2B.p2	-2.632	TFAP2B
UCAAGUA	-2.686
HOX{A4,D4}.p2	-2.718	HOXA4 HOXD4
GUAAACA	-2.730
STAT2,4,6.p2	-2.865	STAT2 STAT4 STAT6
FOS_FOS{B,L1}_JUN{B,D}.p2	-3.013	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
FOXD3.p2	-3.035	FOXD3
FOXA2.p3	-3.159	FOXA2
MAFB.p2	-3.237	MAFB
UCCAGUU	-3.277
HIF1A.p2	-3.519	HIF1A
REST.p3	-3.556	REST
AGCAGCA	-3.610
GTF2I.p2	-3.618	GTF2I
TLX2.p2	-3.777	TLX2
HOX{A6,A7,B6,B7}.p2	-3.864	HOXB6 HOXA7 HOXB7 HOXA6
NFE2L1.p2	-3.944	NFE2L1
XBP1.p3	-4.140	XBP1
RFX1..5_RFXANK_RFXAP.p2	-4.741	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
PRRX1,2.p2	-4.957	PRRX2 PRRX1
UGAAAUG	-5.090
ATF5_CREB3.p2	-5.403	ATF5 CREB3

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Sample name: thymus

Sorted z-values for every WM.