ISMARA results: trachea

Sample name: trachea

Sorted Z-values histogram for the sample trachea

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
TBP.p2	14.069	TBP
POU2F1..3.p2	11.380	POU2F2 POU2F1 POU2F3
FOSL2.p2	8.730	FOSL2
SNAI1..3.p2	7.922	SNAI2 SNAI1 SNAI3
MYFfamily.p2	7.346	MYOD1 MYF6 MYF5 MYOG
AR.p2	7.214	AR
ATF6.p2	7.119	ATF6
SRF.p3	6.879	SRF
FOXA2.p3	6.562	FOXA2
POU5F1.p2	5.943	POU5F1
POU5F1_SOX2{dimer}.p2	5.320	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
NFKB1_REL_RELA.p2	5.259	RELA REL NFKB1
XBP1.p3	5.142	XBP1
GUAGUGU	4.854
PPARG.p2	4.613	PPARG
TCF4_dimer.p2	4.574	TCF4
FOX{C1,C2}.p2	4.569	FOXC1 FOXC2
POU1F1.p2	4.422	POU1F1
MZF1.p2	4.174	MZF1
NFATC1..3.p2	4.085	NFATC3 NFATC2 NFATC1
HBP1_HMGB_SSRP1_UBTF.p2	4.000	HMGB2 HMGB3 SSRP1 UBTF HBP1
TEAD1.p2	3.927	TEAD1 TEAD2 TEAD3 TEAD4
EN1,2.p2	3.923	EN1 EN2
TLX1..3_NFIC{dimer}.p2	3.900	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
POU6F1.p2	3.878	POU6F1
TFAP2{A,C}.p2	3.788	TFAP2C TFAP2A
HAND1,2.p2	3.671	HAND1 HAND2
GTF2A1,2.p2	3.669	GTF2A1 GTF2A2
NR6A1.p2	3.601	NR6A1
TFCP2.p2	3.271	TFCP2
EGR1..3.p2	3.264	EGR3 EGR1 EGR2
MSX1,2.p2	3.097	MSX1 MSX2
EOMES.p2	2.970	EOMES
ESR1.p2	2.941	ESR1
NR1H4.p2	2.895	NR1H4
TBX4,5.p2	2.794	TBX5 TBX4
SPZ1.p2	2.776	SPZ1
FOX{D1,D2}.p2	2.733	FOXD2 FOXD1
SMAD1..7,9.p2	2.632	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
STAT1,3.p3	2.506	STAT1 STAT3
NKX3-2.p2	2.432	NKX3-2
IRF1,2,7.p3	2.323	IRF1 IRF2 IRF7
AAAGUGC	2.321
KLF12.p2	2.284	KLF12
CDC5L.p2	2.254	CDC5L
CRX.p2	2.241	CRX
NR5A1,2.p2	2.232	NR5A1 NR5A2
FOXO1,3,4.p2	2.059	FOXO1 FOXO4 FOXO3
GUGCAAA	2.037
NANOG{mouse}.p2	2.036	NANOG
TFEB.p2	2.015	TFEB
CUUUGGU	2.011
NFIX.p2	1.965	NFIX
ATF2.p2	1.956	ATF2
TGIF1.p2	1.929	TGIF1
ETS1,2.p2	1.863	ETS2 ETS1
ZBTB6.p2	1.850	ZBTB6
AIRE.p2	1.849	AIRE
ZEB1.p2	1.790	ZEB1
MTF1.p2	1.779	MTF1
CCAGUGU	1.743
UAAUGCU	1.741
CCCUGAG	1.730
AAGGCAC	1.725
GAGAUGA	1.722
CAGCAGG	1.696
T.p2	1.695	T
AAGUGCU	1.676
NFIL3.p2	1.634	NFIL3
ZNF238.p2	1.612	ZNF238
UUUUUGC	1.604
STAT2,4,6.p2	1.593	STAT2 STAT4 STAT6
SOX5.p2	1.545	SOX5
GAUCAGA	1.535
FOXP3.p2	1.527	FOXP3
CCAGCAU	1.518
FOX{F1,F2,J1}.p2	1.518	FOXF2 FOXJ1 FOXF1
FEV.p2	1.462	FEV
HMGA1,2.p2	1.449	HMGA1 HMGA2
UCCCUUU	1.435
UUGUUCG	1.418
NR3C1.p2	1.402	NR3C1
GAGAACU	1.402
ALX1.p2	1.386	ALX1
UGUGCUU	1.332
FOS_FOS{B,L1}_JUN{B,D}.p2	1.314	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
AUUGCAC	1.298
CEBPA,B_DDIT3.p2	1.296	DDIT3 CEBPA CEBPB
MEF2{A,B,C,D}.p2	1.295	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
GATA6.p2	1.270	GATA6
FOXL1.p2	1.263	FOXL1
ZIC1..3.p2	1.212	ZIC1 ZIC2 ZIC3
UCACAGU	1.205
EVI1.p2	1.196	EVI1
DBP.p2	1.125	DBP
AGCUUAU	1.121
TFAP4.p2	1.120	TFAP4
HIC1.p2	1.095	HIC1
MYOD1.p2	1.091	MYOD1
TLX2.p2	1.058	TLX2
AAUGCCC	1.046
AAGGUGC	1.043
ADNP_IRX_SIX_ZHX.p2	1.042	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
ONECUT1,2.p2	1.015	ONECUT2 ONECUT1
GGAAGAC	0.997
UGAAAUG	0.956
CACAGUG	0.929
AHR_ARNT_ARNT2.p2	0.924	ARNT AHR ARNT2
EWSR1-FLI1.p2	0.894	FLI1 EWSR1
STAT5{A,B}.p2	0.885	STAT5B STAT5A
HNF1A.p2	0.872	HNF1A
PATZ1.p2	0.857	PATZ1
VSX1,2.p2	0.852	VSX2 VSX1
GAGGUAG	0.845
MAZ.p2	0.830	MAZ
EP300.p2	0.768	EP300
HSF1,2.p2	0.761	HSF1 HSF2
UGCAUAG	0.749
IKZF2.p2	0.710	IKZF2
RREB1.p2	0.687	RREB1
HOX{A5,B5}.p2	0.660	HOXB5 HOXA5
GTF2I.p2	0.649	GTF2I
FOX{I1,J2}.p2	0.642	FOXI1 FOXJ2
PRDM1.p3	0.571	PRDM1
CGUGUCU	0.558
AUGUGCC	0.555
GAUUGUC	0.546
GGACGGA	0.541
ZNF423.p2	0.520	ZNF423
AAUCUCU	0.519
RXRG_dimer.p3	0.481	NR1H2 RXRA PPARG PPARA RXRB RXRG
TP53.p2	0.463	TP53
UCCAGUU	0.442
LEF1_TCF7_TCF7L1,2.p2	0.380	TCF7 TCF7L2 LEF1 TCF7L1
CGUACCG	0.355
RXRA_VDR{dimer}.p2	0.354	VDR	$logo of RXRA_VDR{dimer}.p2$
GCUACAU	0.289
SREBF1,2.p2	0.245	SREBF1 SREBF2
NKX2-1,4.p2	0.240	NKX2-1 NKX2-4
NKX6-1,2.p2	0.239	NKX6-1 NKX6-2
ZBTB16.p2	0.213	ZBTB16
UUGGCAA	0.197
AACAGUC	0.180
AGCAGCG	0.180
PAX4.p2	0.163	PAX4
CUCCCAA	0.150
RFX1..5_RFXANK_RFXAP.p2	0.140	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
PAX6.p2	0.136	PAX6
GGCUCAG	0.127
CTCF.p2	0.085	CTCF
CUX2.p2	0.080	CUX2
CUACAGU	0.068
RORA.p2	0.034	RORA
RUNX1..3.p2	0.034	RUNX1 RUNX3 RUNX2
PAX8.p2	-0.006	PAX8
ACCCGUA	-0.046
AACCGUU	-0.049
UGACCUA	-0.050
GUAACAG	-0.060
UUGGUCC	-0.060
GGAGUGU	-0.061
ACAGUAU	-0.076
BACH2.p2	-0.104	BACH2
CREB1.p2	-0.106	CREB1
UAAGACG	-0.122
PAX3,7.p2	-0.125	PAX7 PAX3
ACUGGCC	-0.130
ACUGCAU	-0.139
CCUUCAU	-0.219
MYBL2.p2	-0.222	MYBL2
AUGGCUU	-0.222
UGUGCGU	-0.222
IKZF1.p2	-0.223	IKZF1
UAAGACU	-0.224
DMAP1_NCOR{1,2}_SMARC.p2	-0.233	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
AGCAGCA	-0.238
TAL1_TCF{3,4,12}.p2	-0.253	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
LMO2.p2	-0.259	LMO2
AAUCUCA	-0.275
ZNF148.p2	-0.275	ZNF148
AACCUGG	-0.329
GAUAUGU	-0.354
GGCAAGA	-0.393
REST.p3	-0.395	REST
NR4A2.p2	-0.423	NR4A2
GFI1B.p2	-0.424	GFI1B
PAX2.p2	-0.447	PAX2
ACAGUAC	-0.471
LHX3,4.p2	-0.475	LHX3 LHX4
SOX17.p2	-0.479	SOX17
ACAUUCA	-0.486
AUGACAC	-0.509
SPI1.p2	-0.511	SPI1
UUGGCAC	-0.529
GATA1..3.p2	-0.548	GATA1 GATA2 GATA3
ATF5_CREB3.p2	-0.571	ATF5 CREB3
UGCAUUG	-0.596
GGCAGUG	-0.606
SOX{8,9,10}.p2	-0.616	SOX9 SOX8 SOX10
ARID5B.p2	-0.633	ARID5B
AUGGCAC	-0.673
AGCUGCC	-0.681
AACGGAA	-0.698
ACCCUGU	-0.725
ZFP161.p2	-0.731	ZFP161
GZF1.p2	-0.735	GZF1
CDX1,2,4.p2	-0.752	CDX1 CDX2 CDX4
GLI1..3.p2	-0.811	GLI1 GLI2 GLI3
UAUUGCU	-0.814
HOXA9_MEIS1.p2	-0.836	MEIS1 HOXA9
EBF1.p2	-0.854	EBF1
PDX1.p2	-0.858	PDX1
GUAAACA	-0.865
NFE2L2.p2	-0.900	NFE2L2
AGUGCAA	-0.950
RXR{A,B,G}.p2	-0.960	RXRA RXRB RXRG
RBPJ.p2	-0.993	RBPJ
AGCACCA	-1.030
UCACAUU	-1.138
AGGUAGU	-1.148
PAX5.p2	-1.200	PAX5
GUCAGUU	-1.226
HNF4A_NR2F1,2.p2	-1.255	NR2F1 NR2F2 HNF4A
NKX2-3_NKX2-5.p2	-1.263	NKX2-5 NKX2-3
NFE2L1.p2	-1.294	NFE2L1
NHLH1,2.p2	-1.331	NHLH1 NHLH2
HLF.p2	-1.344	HLF
ZNF384.p2	-1.365	ZNF384
FOXN1.p2	-1.379	FOXN1
NANOG.p2	-1.385	NANOG
PRRX1,2.p2	-1.385	PRRX2 PRRX1
SRY.p2	-1.401	SRY
GGAAUGU	-1.459
FOXD3.p2	-1.566	FOXD3
AGUGGUU	-1.640
UCAAGUA	-1.662
JUN.p2	-1.722	JUN JUND JUNB
GCAGCAU	-1.768
NFE2.p2	-1.800	NFE2
NKX3-1.p2	-1.864	NKX3-1
AAUACUG	-1.883
POU3F1..4.p2	-1.888	POU3F1 POU3F3 POU3F2 POU3F4
AACACUG	-1.914
NKX2-2,8.p2	-2.248	NKX2-2 NKX2-8
HMX1.p2	-2.378	HMX1
HOX{A6,A7,B6,B7}.p2	-2.388	HOXB6 HOXA7 HOXB7 HOXA6
MAFB.p2	-2.452	MAFB
TFDP1.p2	-2.462	TFDP1
SOX2.p2	-2.545	SOX2
FOXQ1.p2	-2.665	FOXQ1
PBX1.p2	-2.706	PBX1
CAGUGCA	-2.775
ELF1,2,4.p2	-2.802	ELF2 ELF1 ELF4
HES1.p2	-2.863	HES1
GCUGGUG	-3.055
KLF4.p3	-3.130	KLF4
GFI1.p2	-3.183	GFI1
HOX{A4,D4}.p2	-3.259	HOXA4 HOXD4
BPTF.p2	-3.396	BPTF
SP1.p2	-3.745	SP1
SPIB.p2	-4.204	SPIB
bHLH_family.p2	-4.374	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
EHF.p2	-4.429	EHF
ATF4.p2	-4.610	ATF4
HIF1A.p2	-4.612	HIF1A
TFAP2B.p2	-4.775	TFAP2B
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-4.979	ARNT MAX MYC USF1 BHLHB2 ARNT2
ESRRA.p2	-5.061	ESRRA
PITX1..3.p2	-5.239	PITX2 PITX3 PITX1
NFY{A,B,C}.p2	-5.386	NFYC NFYB NFYA
MYB.p2	-7.156	MYB
YY1.p2	-9.546	YY1
ELK1,4_GABP{A,B1}.p3	-10.134	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
ZNF143.p2	-13.988	ZNF143
E2F1..5.p2	-14.088	E2F4 E2F5 E2F2 E2F1 E2F3
NRF1.p2	-15.375	NRF1

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Sample name: trachea

Sorted z-values for every WM.