ISMARA results: GNF_1

Sample name: GNF_1_skin

Sorted Z-values histogram for the sample GNF_1_skin

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
UUUUUGC	9.590
CUCCCAA	8.427
SNAI1..3.p2	5.128	SNAI2 SNAI1 SNAI3
TBP.p2	4.903	TBP
SMAD1..7,9.p2	3.466	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
FOS_FOS{B,L1}_JUN{B,D}.p2	3.285	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
GLI1..3.p2	3.227	GLI1 GLI2 GLI3
NANOG{mouse}.p2	3.226	NANOG
MTF1.p2	3.132	MTF1
AHR_ARNT_ARNT2.p2	3.107	ARNT AHR ARNT2
POU1F1.p2	3.046	POU1F1
NKX2-3_NKX2-5.p2	3.007	NKX2-5 NKX2-3
UCCCUUU	2.933
MZF1.p2	2.873	MZF1
EVI1.p2	2.857	EVI1
STAT1,3.p3	2.806	STAT1 STAT3
GATA6.p2	2.709	GATA6
AAAGUGC	2.687
TLX1..3_NFIC{dimer}.p2	2.676	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
TLX2.p2	2.632	TLX2
ATF6.p2	2.614	ATF6
TEAD1.p2	2.591	TEAD1 TEAD2 TEAD3 TEAD4
FOX{D1,D2}.p2	2.494	FOXD2 FOXD1
MYFfamily.p2	2.452	MYOD1 MYF6 MYF5 MYOG
TBX4,5.p2	2.442	TBX5 TBX4
KLF12.p2	2.257	KLF12
FOXA2.p3	2.257	FOXA2
UGAAAUG	2.241
CACAGUG	2.173
RREB1.p2	2.135	RREB1
AGCACCA	2.115
FOSL2.p2	2.073	FOSL2
TGIF1.p2	2.070	TGIF1
POU5F1.p2	1.996	POU5F1
RBPJ.p2	1.965	RBPJ
FEV.p2	1.921	FEV
GGCAGUG	1.898
GATA1..3.p2	1.888	GATA1 GATA2 GATA3
NR3C1.p2	1.837	NR3C1
LEF1_TCF7_TCF7L1,2.p2	1.829	TCF7 TCF7L2 LEF1 TCF7L1
JUN.p2	1.818	JUN JUND JUNB
HLF.p2	1.761	HLF
FOXP3.p2	1.747	FOXP3
UAUUGCU	1.746
GAGGUAG	1.745
AAGUGCU	1.728
REST.p3	1.716	REST
LHX3,4.p2	1.678	LHX3 LHX4
UUGUUCG	1.622
HMX1.p2	1.618	HMX1
NFATC1..3.p2	1.609	NFATC3 NFATC2 NFATC1
CCCUGAG	1.567
EBF1.p2	1.560	EBF1
FOXL1.p2	1.530	FOXL1
RXR{A,B,G}.p2	1.496	RXRA RXRB RXRG
RORA.p2	1.465	RORA
GAGAACU	1.444
GTF2A1,2.p2	1.436	GTF2A1 GTF2A2
TFCP2.p2	1.348	TFCP2
GGCUCAG	1.319
NR1H4.p2	1.290	NR1H4
HIC1.p2	1.274	HIC1
UGUGCUU	1.274
GAGAUGA	1.202
TAL1_TCF{3,4,12}.p2	1.198	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
CCAGCAU	1.174
SRY.p2	1.152	SRY
MYBL2.p2	1.126	MYBL2
AAUCUCU	1.120
EN1,2.p2	1.118	EN1 EN2
ALX1.p2	1.093	ALX1
ACCCUGU	1.087
MYOD1.p2	1.085	MYOD1
ETS1,2.p2	1.084	ETS2 ETS1
POU5F1_SOX2{dimer}.p2	1.082	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
NFKB1_REL_RELA.p2	1.057	RELA REL NFKB1
CUUUGGU	1.052
GTF2I.p2	1.022	GTF2I
STAT5{A,B}.p2	0.996	STAT5B STAT5A
ZNF384.p2	0.974	ZNF384
MEF2{A,B,C,D}.p2	0.973	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
ACAGUAC	0.971
HSF1,2.p2	0.961	HSF1 HSF2
FOX{C1,C2}.p2	0.954	FOXC1 FOXC2
ONECUT1,2.p2	0.947	ONECUT2 ONECUT1
CUACAGU	0.944
MSX1,2.p2	0.937	MSX1 MSX2
NR6A1.p2	0.910	NR6A1
HNF1A.p2	0.907	HNF1A
HNF4A_NR2F1,2.p2	0.884	NR2F1 NR2F2 HNF4A
AGCUUAU	0.842
HMGA1,2.p2	0.834	HMGA1 HMGA2
PRRX1,2.p2	0.826	PRRX2 PRRX1
PPARG.p2	0.803	PPARG
POU6F1.p2	0.742	POU6F1
TCF4_dimer.p2	0.725	TCF4
CEBPA,B_DDIT3.p2	0.720	DDIT3 CEBPA CEBPB
NKX2-1,4.p2	0.713	NKX2-1 NKX2-4
NFIX.p2	0.705	NFIX
TFEB.p2	0.646	TFEB
CGUGUCU	0.644
VSX1,2.p2	0.613	VSX2 VSX1
GAUCAGA	0.605
FOXO1,3,4.p2	0.599	FOXO1 FOXO4 FOXO3
AUGACAC	0.592
CDC5L.p2	0.591	CDC5L
TFAP4.p2	0.579	TFAP4
AAUCUCA	0.575
AUGUGCC	0.561
HAND1,2.p2	0.537	HAND1 HAND2
PDX1.p2	0.536	PDX1
AGCUGCC	0.531
STAT2,4,6.p2	0.522	STAT2 STAT4 STAT6
NFIL3.p2	0.481	NFIL3
NANOG.p2	0.464	NANOG
MAZ.p2	0.439	MAZ
HOXA9_MEIS1.p2	0.425	MEIS1 HOXA9
IKZF1.p2	0.411	IKZF1
TFAP2{A,C}.p2	0.399	TFAP2C TFAP2A
HBP1_HMGB_SSRP1_UBTF.p2	0.399	HMGB2 HMGB3 SSRP1 UBTF HBP1
ZNF238.p2	0.398	ZNF238
POU2F1..3.p2	0.385	POU2F2 POU2F1 POU2F3
UAAGACU	0.380
AAGGCAC	0.373
CREB1.p2	0.370	CREB1
AACCUGG	0.355
AAUACUG	0.354
UAAUGCU	0.351
AGCAGCG	0.284
AGUGCAA	0.280
AUUGCAC	0.266
AGGUAGU	0.263
FOX{I1,J2}.p2	0.255	FOXI1 FOXJ2
AUGGCUU	0.231
NFE2L1.p2	0.215	NFE2L1
GUCAGUU	0.207
UGCAUAG	0.202
IKZF2.p2	0.200	IKZF2
AAUGCCC	0.185
ACUGGCC	0.170
UGACCUA	0.162
GUAAACA	0.161
UCAAGUA	0.157
PAX6.p2	0.142	PAX6
ZBTB6.p2	0.109	ZBTB6
UUGGCAA	0.104
PAX8.p2	0.101	PAX8
RXRA_VDR{dimer}.p2	0.099	VDR	$logo of RXRA_VDR{dimer}.p2$
GGCAAGA	0.093
CCAGUGU	0.091
T.p2	0.076	T
EOMES.p2	0.063	EOMES
ACUGCAU	0.053
AIRE.p2	0.053	AIRE
UGCAUUG	0.019
HOX{A5,B5}.p2	-0.003	HOXB5 HOXA5
CCUUCAU	-0.003
DBP.p2	-0.017	DBP
ACCCGUA	-0.032
ZEB1.p2	-0.036	ZEB1
CAGUGCA	-0.039
EGR1..3.p2	-0.047	EGR3 EGR1 EGR2
CAGCAGG	-0.070
CGUACCG	-0.073
SOX{8,9,10}.p2	-0.090	SOX9 SOX8 SOX10
ACAUUCA	-0.108
UGUGCGU	-0.111
EWSR1-FLI1.p2	-0.129	FLI1 EWSR1
PATZ1.p2	-0.140	PATZ1
GGACGGA	-0.159
GAUAUGU	-0.170
POU3F1..4.p2	-0.177	POU3F1 POU3F3 POU3F2 POU3F4
PAX3,7.p2	-0.213	PAX7 PAX3
AR.p2	-0.223	AR
AACCGUU	-0.229
GCAGCAU	-0.235
ZBTB16.p2	-0.261	ZBTB16
GCUGGUG	-0.262
NHLH1,2.p2	-0.266	NHLH1 NHLH2
FOXD3.p2	-0.267	FOXD3
UCACAGU	-0.291
PAX2.p2	-0.292	PAX2
AACGGAA	-0.296
CUX2.p2	-0.300	CUX2
SRF.p3	-0.324	SRF
GGAAGAC	-0.348
SOX5.p2	-0.348	SOX5
AGCAGCA	-0.357
SREBF1,2.p2	-0.362	SREBF1 SREBF2
IRF1,2,7.p3	-0.387	IRF1 IRF2 IRF7
GAUUGUC	-0.408
NKX3-1.p2	-0.421	NKX3-1
GUGCAAA	-0.433
AACACUG	-0.438
SPZ1.p2	-0.469	SPZ1
ESR1.p2	-0.492	ESR1
NFE2.p2	-0.493	NFE2
GGAGUGU	-0.501
ACAGUAU	-0.506
GZF1.p2	-0.509	GZF1
ADNP_IRX_SIX_ZHX.p2	-0.512	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
PRDM1.p3	-0.521	PRDM1
AAGGUGC	-0.523
DMAP1_NCOR{1,2}_SMARC.p2	-0.525	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
UUGGCAC	-0.528
CRX.p2	-0.532	CRX
PITX1..3.p2	-0.537	PITX2 PITX3 PITX1
UAAGACG	-0.537
RFX1..5_RFXANK_RFXAP.p2	-0.551	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
ATF2.p2	-0.584	ATF2
ZNF423.p2	-0.604	ZNF423
PAX4.p2	-0.605	PAX4
GCUACAU	-0.612
GUAACAG	-0.622
EP300.p2	-0.642	EP300
GUAGUGU	-0.739
FOX{F1,F2,J1}.p2	-0.748	FOXF2 FOXJ1 FOXF1
UCCAGUU	-0.770
HOX{A4,D4}.p2	-0.829	HOXA4 HOXD4
FOXQ1.p2	-0.838	FOXQ1
NR5A1,2.p2	-0.840	NR5A1 NR5A2
SPIB.p2	-0.841	SPIB
PAX5.p2	-0.855	PAX5
NR4A2.p2	-0.863	NR4A2
CDX1,2,4.p2	-0.868	CDX1 CDX2 CDX4
NKX6-1,2.p2	-0.912	NKX6-1 NKX6-2
UUGGUCC	-0.929
GFI1B.p2	-0.930	GFI1B
RUNX1..3.p2	-0.976	RUNX1 RUNX3 RUNX2
AACAGUC	-1.028
ARID5B.p2	-1.039	ARID5B
ZIC1..3.p2	-1.148	ZIC1 ZIC2 ZIC3
GFI1.p2	-1.198	GFI1
NKX3-2.p2	-1.226	NKX3-2
KLF4.p3	-1.230	KLF4
AGUGGUU	-1.252
CTCF.p2	-1.310	CTCF
SOX17.p2	-1.328	SOX17
UCACAUU	-1.330
PBX1.p2	-1.410	PBX1
SOX2.p2	-1.465	SOX2
AUGGCAC	-1.499
LMO2.p2	-1.528	LMO2
ZNF148.p2	-1.565	ZNF148
TP53.p2	-1.594	TP53
RXRG_dimer.p3	-1.682	NR1H2 RXRA PPARG PPARA RXRB RXRG
SPI1.p2	-1.770	SPI1
EHF.p2	-1.926	EHF
TFDP1.p2	-1.979	TFDP1
HOX{A6,A7,B6,B7}.p2	-2.064	HOXB6 HOXA7 HOXB7 HOXA6
bHLH_family.p2	-2.206	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
FOXN1.p2	-2.569	FOXN1
ZFP161.p2	-2.676	ZFP161
HES1.p2	-2.820	HES1
TFAP2B.p2	-2.918	TFAP2B
MAFB.p2	-2.974	MAFB
NKX2-2,8.p2	-3.121	NKX2-2 NKX2-8
BPTF.p2	-3.188	BPTF
BACH2.p2	-3.356	BACH2
HIF1A.p2	-3.510	HIF1A
ATF4.p2	-3.514	ATF4
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-3.664	ARNT MAX MYC USF1 BHLHB2 ARNT2
ATF5_CREB3.p2	-3.723	ATF5 CREB3
SP1.p2	-3.777	SP1
NFE2L2.p2	-3.992	NFE2L2
E2F1..5.p2	-4.080	E2F4 E2F5 E2F2 E2F1 E2F3
GGAAUGU	-5.328
XBP1.p3	-5.391	XBP1
ELF1,2,4.p2	-5.484	ELF2 ELF1 ELF4
MYB.p2	-6.014	MYB
NFY{A,B,C}.p2	-6.829	NFYC NFYB NFYA
ESRRA.p2	-6.916	ESRRA
ZNF143.p2	-7.203	ZNF143
ELK1,4_GABP{A,B1}.p3	-7.533	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
NRF1.p2	-9.668	NRF1
YY1.p2	-10.494	YY1

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Sample name: GNF_1_skin

Sorted z-values for every WM.