ISMARA results: GNF_1

Sample name: GNF_1_thymus

Sorted Z-values histogram for the sample GNF_1_thymus

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
POU2F1..3.p2	6.823	POU2F2 POU2F1 POU2F3
FOSL2.p2	4.987	FOSL2
POU5F1.p2	4.620	POU5F1
NFY{A,B,C}.p2	4.361	NFYC NFYB NFYA
NFKB1_REL_RELA.p2	4.254	RELA REL NFKB1
RUNX1..3.p2	4.180	RUNX1 RUNX3 RUNX2
PITX1..3.p2	4.019	PITX2 PITX3 PITX1
SPI1.p2	3.858	SPI1
AR.p2	3.667	AR
SPIB.p2	3.599	SPIB
TBP.p2	3.518	TBP
EP300.p2	3.504	EP300
NR3C1.p2	3.475	NR3C1
SOX17.p2	3.332	SOX17
YY1.p2	3.280	YY1
TFCP2.p2	3.208	TFCP2
GAUUGUC	2.994
E2F1..5.p2	2.945	E2F4 E2F5 E2F2 E2F1 E2F3
CAGCAGG	2.917
GGCAGUG	2.841
FOX{D1,D2}.p2	2.811	FOXD2 FOXD1
MEF2{A,B,C,D}.p2	2.780	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
CCCUGAG	2.753
ETS1,2.p2	2.672	ETS2 ETS1
HAND1,2.p2	2.663	HAND1 HAND2
TGIF1.p2	2.643	TGIF1
IRF1,2,7.p3	2.538	IRF1 IRF2 IRF7
GGAAGAC	2.435
NR1H4.p2	2.373	NR1H4
FOX{C1,C2}.p2	2.355	FOXC1 FOXC2
POU6F1.p2	2.316	POU6F1
TFDP1.p2	2.231	TFDP1
NKX3-2.p2	2.198	NKX3-2
PRDM1.p3	2.180	PRDM1
ZNF148.p2	2.175	ZNF148
PAX4.p2	2.171	PAX4
AGCACCA	2.156
GTF2A1,2.p2	2.010	GTF2A1 GTF2A2
NFE2L2.p2	1.914	NFE2L2
CUX2.p2	1.782	CUX2
AIRE.p2	1.754	AIRE
UAAUGCU	1.743
PATZ1.p2	1.708	PATZ1
ELF1,2,4.p2	1.689	ELF2 ELF1 ELF4
GLI1..3.p2	1.684	GLI1 GLI2 GLI3
HBP1_HMGB_SSRP1_UBTF.p2	1.643	HMGB2 HMGB3 SSRP1 UBTF HBP1
SOX2.p2	1.636	SOX2
KLF12.p2	1.606	KLF12
PPARG.p2	1.606	PPARG
DMAP1_NCOR{1,2}_SMARC.p2	1.556	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
NRF1.p2	1.483	NRF1
CTCF.p2	1.439	CTCF
GGCUCAG	1.370
ADNP_IRX_SIX_ZHX.p2	1.369	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
HNF4A_NR2F1,2.p2	1.322	NR2F1 NR2F2 HNF4A
LMO2.p2	1.303	LMO2
T.p2	1.283	T
LHX3,4.p2	1.233	LHX3 LHX4
ZFP161.p2	1.205	ZFP161
TFEB.p2	1.164	TFEB
NKX2-2,8.p2	1.156	NKX2-2 NKX2-8
AGCUGCC	1.120
RORA.p2	1.112	RORA
POU1F1.p2	1.083	POU1F1
ZNF423.p2	1.062	ZNF423
EOMES.p2	1.012	EOMES
CUCCCAA	0.989
ZNF238.p2	0.978	ZNF238
FOX{I1,J2}.p2	0.944	FOXI1 FOXJ2
AAGGUGC	0.936
RXRA_VDR{dimer}.p2	0.932	VDR	$logo of RXRA_VDR{dimer}.p2$
MYFfamily.p2	0.932	MYOD1 MYF6 MYF5 MYOG
EN1,2.p2	0.925	EN1 EN2
CREB1.p2	0.912	CREB1
NR6A1.p2	0.908	NR6A1
RREB1.p2	0.889	RREB1
AGCUUAU	0.862
UAUUGCU	0.860
HMX1.p2	0.833	HMX1
GCUACAU	0.766
ZEB1.p2	0.747	ZEB1
AGUGGUU	0.727
GGACGGA	0.706
ZNF384.p2	0.681	ZNF384
AGCAGCG	0.670
GATA1..3.p2	0.651	GATA1 GATA2 GATA3
UUGGCAC	0.650
EBF1.p2	0.633	EBF1
TCF4_dimer.p2	0.615	TCF4
POU5F1_SOX2{dimer}.p2	0.587	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
ELK1,4_GABP{A,B1}.p3	0.581	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
AAAGUGC	0.571
GAGAUGA	0.566
HOX{A5,B5}.p2	0.554	HOXB5 HOXA5
SREBF1,2.p2	0.543	SREBF1 SREBF2
NANOG.p2	0.524	NANOG
TAL1_TCF{3,4,12}.p2	0.519	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
SRF.p3	0.510	SRF
CCAGCAU	0.491
CDC5L.p2	0.449	CDC5L
TP53.p2	0.447	TP53
HOXA9_MEIS1.p2	0.410	MEIS1 HOXA9
GAUCAGA	0.367
ONECUT1,2.p2	0.362	ONECUT2 ONECUT1
ZBTB6.p2	0.357	ZBTB6
PBX1.p2	0.350	PBX1
FOXP3.p2	0.339	FOXP3
UGCAUUG	0.315
AUGGCAC	0.302
MZF1.p2	0.297	MZF1
NANOG{mouse}.p2	0.280	NANOG
GCUGGUG	0.264
CRX.p2	0.261	CRX
AACCGUU	0.254
MYOD1.p2	0.247	MYOD1
GAGGUAG	0.226
MTF1.p2	0.220	MTF1
GATA6.p2	0.209	GATA6
FOXO1,3,4.p2	0.183	FOXO1 FOXO4 FOXO3
ACAGUAU	0.177
NFIL3.p2	0.174	NFIL3
AAGUGCU	0.172
AACCUGG	0.166
MYBL2.p2	0.135	MYBL2
AUGUGCC	0.128
JUN.p2	0.121	JUN JUND JUNB
UCACAUU	0.105
ATF4.p2	0.101	ATF4
GGAAUGU	0.099
NR5A1,2.p2	0.080	NR5A1 NR5A2
NFATC1..3.p2	0.076	NFATC3 NFATC2 NFATC1
AAGGCAC	0.066
CACAGUG	0.061
UAAGACG	0.042
UAAGACU	0.038
UGACCUA	0.032
PAX8.p2	0.028	PAX8
AACAGUC	0.018
ACCCGUA	0.014
GCAGCAU	0.009
GFI1B.p2	0.002	GFI1B
VSX1,2.p2	-0.000	VSX2 VSX1
ZBTB16.p2	-0.016	ZBTB16
IKZF2.p2	-0.017	IKZF2
HES1.p2	-0.031	HES1
BACH2.p2	-0.064	BACH2
GAGAACU	-0.068
ACAGUAC	-0.069
UCCCUUU	-0.078
SMAD1..7,9.p2	-0.080	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
GZF1.p2	-0.084	GZF1
MYB.p2	-0.086	MYB
FEV.p2	-0.101	FEV
ACUGCAU	-0.108
NKX6-1,2.p2	-0.113	NKX6-1 NKX6-2
CCAGUGU	-0.113
PAX3,7.p2	-0.155	PAX7 PAX3
ZNF143.p2	-0.157	ZNF143
UGUGCGU	-0.157
CGUACCG	-0.217
CDX1,2,4.p2	-0.225	CDX1 CDX2 CDX4
RXR{A,B,G}.p2	-0.229	RXRA RXRB RXRG
CGUGUCU	-0.229
AACGGAA	-0.229
RXRG_dimer.p3	-0.231	NR1H2 RXRA PPARG PPARA RXRB RXRG
NKX2-1,4.p2	-0.245	NKX2-1 NKX2-4
ESRRA.p2	-0.268	ESRRA
ACUGGCC	-0.277
GAUAUGU	-0.287
TEAD1.p2	-0.296	TEAD1 TEAD2 TEAD3 TEAD4
SPZ1.p2	-0.302	SPZ1
AAUGCCC	-0.303
GGAGUGU	-0.313
NFE2.p2	-0.313	NFE2
ACCCUGU	-0.345
EWSR1-FLI1.p2	-0.382	FLI1 EWSR1
MSX1,2.p2	-0.384	MSX1 MSX2
PDX1.p2	-0.388	PDX1
TLX1..3_NFIC{dimer}.p2	-0.416	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
ALX1.p2	-0.467	ALX1
GGCAAGA	-0.468
bHLH_family.p2	-0.483	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
STAT1,3.p3	-0.496	STAT1 STAT3
HSF1,2.p2	-0.498	HSF1 HSF2
AUGACAC	-0.500
PAX6.p2	-0.513	PAX6
AAUCUCA	-0.552
NFIX.p2	-0.558	NFIX
ZIC1..3.p2	-0.564	ZIC1 ZIC2 ZIC3
NR4A2.p2	-0.568	NR4A2
NKX2-3_NKX2-5.p2	-0.570	NKX2-5 NKX2-3
ARID5B.p2	-0.587	ARID5B
STAT5{A,B}.p2	-0.592	STAT5B STAT5A
GUAGUGU	-0.596
CUUUGGU	-0.604
TFAP4.p2	-0.605	TFAP4
POU3F1..4.p2	-0.614	POU3F1 POU3F3 POU3F2 POU3F4
SP1.p2	-0.622	SP1
GUAACAG	-0.623
DBP.p2	-0.626	DBP
CEBPA,B_DDIT3.p2	-0.645	DDIT3 CEBPA CEBPB
HNF1A.p2	-0.645	HNF1A
CCUUCAU	-0.648
ESR1.p2	-0.681	ESR1
RBPJ.p2	-0.683	RBPJ
TBX4,5.p2	-0.691	TBX5 TBX4
UGCAUAG	-0.719
ATF6.p2	-0.762	ATF6
MAZ.p2	-0.820	MAZ
ATF2.p2	-0.843	ATF2
SOX5.p2	-0.899	SOX5
AAUCUCU	-0.906
FOX{F1,F2,J1}.p2	-0.954	FOXF2 FOXJ1 FOXF1
CAGUGCA	-0.987
HIC1.p2	-1.040	HIC1
AGUGCAA	-1.050
HMGA1,2.p2	-1.064	HMGA1 HMGA2
UCACAGU	-1.077
FOXQ1.p2	-1.080	FOXQ1
SRY.p2	-1.104	SRY
UUGGUCC	-1.111
NKX3-1.p2	-1.137	NKX3-1
ACAUUCA	-1.149
AGGUAGU	-1.151
FOXN1.p2	-1.158	FOXN1
UUGUUCG	-1.182
GUCAGUU	-1.264
TFAP2{A,C}.p2	-1.299	TFAP2C TFAP2A
FOXL1.p2	-1.302	FOXL1
GFI1.p2	-1.311	GFI1
AUGGCUU	-1.325
IKZF1.p2	-1.351	IKZF1
CUACAGU	-1.353
PAX5.p2	-1.371	PAX5
SNAI1..3.p2	-1.398	SNAI2 SNAI1 SNAI3
NHLH1,2.p2	-1.406	NHLH1 NHLH2
KLF4.p3	-1.416	KLF4
PAX2.p2	-1.476	PAX2
AHR_ARNT_ARNT2.p2	-1.483	ARNT AHR ARNT2
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-1.571	ARNT MAX MYC USF1 BHLHB2 ARNT2
UGUGCUU	-1.586
EVI1.p2	-1.595	EVI1
EHF.p2	-1.615	EHF
AAUACUG	-1.615
EGR1..3.p2	-1.636	EGR3 EGR1 EGR2
AACACUG	-1.650
AUUGCAC	-1.689
BPTF.p2	-1.719	BPTF
HOX{A4,D4}.p2	-1.739	HOXA4 HOXD4
FOXD3.p2	-1.746	FOXD3
GUGCAAA	-1.817
SOX{8,9,10}.p2	-1.827	SOX9 SOX8 SOX10
UUGGCAA	-1.856
TFAP2B.p2	-1.914	TFAP2B
LEF1_TCF7_TCF7L1,2.p2	-1.921	TCF7 TCF7L2 LEF1 TCF7L1
HLF.p2	-1.929	HLF
GUAAACA	-1.956
UCAAGUA	-1.993
STAT2,4,6.p2	-2.084	STAT2 STAT4 STAT6
MAFB.p2	-2.254	MAFB
AGCAGCA	-2.280
FOXA2.p3	-2.414	FOXA2
UCCAGUU	-2.419
FOS_FOS{B,L1}_JUN{B,D}.p2	-2.501	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
HIF1A.p2	-2.511	HIF1A
UUUUUGC	-2.540
GTF2I.p2	-2.591	GTF2I
NFE2L1.p2	-2.614	NFE2L1
REST.p3	-2.625	REST
TLX2.p2	-2.840	TLX2
XBP1.p3	-2.920	XBP1
HOX{A6,A7,B6,B7}.p2	-2.959	HOXB6 HOXA7 HOXB7 HOXA6
ATF5_CREB3.p2	-3.642	ATF5 CREB3
RFX1..5_RFXANK_RFXAP.p2	-3.661	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
UGAAAUG	-3.805
PRRX1,2.p2	-3.819	PRRX2 PRRX1

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Sample name: GNF_1_thymus

Sorted z-values for every WM.