• All motifs sorted by activity significance
• All samples sorted alphabetically
• Mean activities

• Activities table
• Activity deltas table
• Regulatory interactions
• Motifs sorted by significance (text)
• Download the whole report

ISMARA results for averaged GNF SymAtlas + NCI-60 cancer cell lines, human (Su, 2004; Ross, 2000)

ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.

All motifs sorted by activity significance

Motif name	Z-value	Associated genes	Profile	Logo
YY1.p2	8.757	YY1 (NF-E1, DELTA, UCRBP, YIN-YANG-1, INO80S)
E2F1..5.p2	8.692	E2F4 (E2F-4) E2F5 E2F2 (E2F-2) E2F1 (RBP3) E2F3
NRF1.p2	7.939	NRF1 (EWG, ALPHA-PAL)
MYB.p2	6.871	MYB (c-myb)
ELK1,4_GABP{A,B1}.p3	6.677	GABPA (E4TF1A, NFT2, NRF2, E4TF1-60, NRF2A) GABPB1 (E4TF1-47, GABPB) ELK4 (SAP1) ELK1
ZNF143.p2	6.550	ZNF143 (SBF, pHZ-1, STAF)
NFY{A,B,C}.p2	6.354	NFYC (CBF-C) NFYB (CBF-A, HAP3) NFYA (HAP2, CBF-B)
CUCCCAA	5.808	hsa-miR-150
ELF1,2,4.p2	5.680	ELF2 (EU32, NERF, NERF-2, NERF-1A, NERF-1B) ELF1 ELF4 (MEF, ELFR)
TFDP1.p2	5.556	TFDP1 (Dp-1, DRTF1, DP1)
TBP.p2	5.077	TBP (TFIID)
RFX1..5_RFXANK_RFXAP.p2	4.795	RFX1 (EF-C) RFXAP RFX5 RFXANK (BLS, RFX-B, ANKRA1, F14150_1, MGC138628) RFX4 RFX3 RFX2 (FLJ14226)
XBP1.p3	4.530	XBP1
UUUUUGC	4.378	hsa-miR-129-5p
KLF12.p2	4.372	KLF12 (AP-2rep, HSPC122, AP2REP)
SPI1.p2	4.202	SPI1 (PU.1, SPI-A, OF, SFPI1, SPI-1)
REST.p3	4.061	REST (NRSF, XBR)
GGAAUGU	4.049	hsa-miR-1 hsa-miR-206 hsa-miR-613
HIC1.p2	4.035	HIC1 (ZBTB29)
RREB1.p2	4.022	RREB1 (HNT)
EHF.p2	4.008	EHF
ATF5_CREB3.p2	3.954	ATF5 CREB3 (LZIP, Luman)
TGIF1.p2	3.934	TGIF1
bHLH_family.p2	3.919	ARNTL (MOP3, JAP3, BMAL1, PASD3, bHLHe5) MITF (WS2A, MI, bHLHe32) MXI1 (MXD2, MAD2, MXI, bHLHc11) TFE3 (TFEA, bHLHe33) CLOCK (KIAA0334, KAT13D, bHLHe8) OLIG2 (RACK17, OLIGO2, bHLHe19) MXD4 (MAD4, MSTP149, MST149, bHLHc12) HEY2 (bHLHb32) HEY1 (HESR-1, CHF2, HESR1, HRT-1, CHF-2, HERP2, BHLHb31) HEYL (bHLHb33) MLXIPL (WS-bHLH, MIO, CHREBP, MONDOB) HES6 (bHLHc23) MXD3 (MAD3, bHLHc13) ARNTL2 (BMAL2, MOP9, CLIF, PASD9, bHLHe6) ID1 (dJ857M17.1.2, bHLHb24) MNT (ROX, MXD6, MAD6, bHLHd3) OLIG1 (BHLHB6, bHLHe21) NPAS2 (MOP4, PASD4, bHLHe9)
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	3.912	ARNT (HIF-1beta, bHLHe2) MAX (bHLHd4) MYC (c-Myc, bHLHe39) USF1 (UEF, MLTFI, bHLHb11) BHLHB2 (DEC1, bHLHe40) ARNT2 (KIAA0307, bHLHe1)
IRF1,2,7.p3	3.894	IRF1 (MAR, IRF-1) IRF2 (IRF-2, DKFZp686F0244) IRF7 (IRF7A, IRF-7H)
POU2F1..3.p2	3.802	POU2F2 (OCT2) POU2F1 (OCT1) POU2F3 (OCT11, PLA-1, Skn-1a, Epoc-1)
TLX1..3_NFIC{dimer}.p2	3.713	TLX1 TLX3 (RNX)
SMAD1..7,9.p2	3.712	SMAD5 (Dwfc, JV5-1) SMAD1 (MADR1, JV4-1) SMAD3 (JV15-2, HsT17436) SMAD4 (DPC4) SMAD2 (MADR2, JV18-1) SMAD6 (HsT17432) SMAD7 SMAD9
MYOD1.p2	3.657	MYOD1 (PUM, MYOD, bHLHc1)
MTF1.p2	3.527	MTF1
HIF1A.p2	3.506	HIF1A (MOP1, HIF-1alpha, PASD8, HIF1)
POU5F1.p2	3.451	POU5F1 (OCT3, Oct4, MGC22487)
RUNX1..3.p2	3.447	RUNX1 (PEBP2A2, AMLCR1) RUNX3 (AML2, PEBP2A3) RUNX2 (AML3, PEBP2A1, PEBP2aA1)
TFCP2.p2	3.436	TFCP2 (CP2, LSF, LBP-1C, TFCP2C)
JUN.p2	3.416	JUN (c-Jun, AP-1) JUND (AP-1) JUNB
HNF4A_NR2F1,2.p2	3.400	NR2F1 (EAR-3, COUP-TFI, TCFCOUP1, SVP44) NR2F2 (COUP-TFII, COUPTFB, SVP40) HNF4A (NR2A1, HNF4)
HNF1A.p2	3.374	HNF1A (HNF1, LFB1)
MYFfamily.p2	3.348	MYOD1 (PUM, MYOD, bHLHc1) MYF6 (MRF4, bHLHc4) MYF5 (bHLHc2) MYOG (bHLHc3)
SNAI1..3.p2	3.330	SNAI2 (SLUGH1) SNAI1 (SNA, SLUGH2, SNAH) SNAI3 (SMUC, Zfp293)
SRF.p3	3.325	SRF (MCM1)
NFKB1_REL_RELA.p2	3.316	RELA (p65) REL (I-Rel) NFKB1 (KBF1, p105)
SPIB.p2	3.276	SPIB (SPI-B)
GATA6.p2	3.255	GATA6
TEAD1.p2	3.253	TEAD1 (TEF-1) TEAD2 (ETF, TEF4, TEF-4, TEAD-2) TEAD3 (TEF5, TEAD5, TEF-5, DTEF-1, ETFR-1, TEAD-3) TEAD4 (TEF3, RTEF1, TEF-3, EFTR-2, TEFR-1, TCF13L1, hRTEF-1B)
AAGGCAC	3.242	hsa-miR-124 hsa-miR-506
ESRRA.p2	3.238	ESRRA (ERR1, ERRalpha, NR3B1, ERRa)
GTF2I.p2	3.178	GTF2I (TFII-I, BAP-135, SPIN, BTKAP1, DIWS, IB291)
HOX{A6,A7,B6,B7}.p2	3.110	HOXB6 HOXA7 HOXB7 HOXA6
EVI1.p2	3.040	EVI1 (MDS1-EVI1, PRDM3)
UGUGCUU	2.998	hsa-miR-218
GATA1..3.p2	2.992	GATA1 (ERYF1, NFE1) GATA2 (NFE1B) GATA3 (HDR)
KLF4.p3	2.984	KLF4 (EZF, GKLF)
HAND1,2.p2	2.970	HAND1 (eHand, Thing1, Hxt, bHLHa27) HAND2 (dHand, Thing2, Hed, bHLHa26)
GGCUCAG	2.933	hsa-miR-24
ETS1,2.p2	2.906	ETS2 ETS1 (FLJ10768, ETS-1)
GGCAGUG	2.892	hsa-miR-34a hsa-miR-34c-5p hsa-miR-449a hsa-miR-449b
ZIC1..3.p2	2.864	ZIC1 (ZIC, ZNF201) ZIC2 (HPE5) ZIC3 (HTX, ZNF203)
MZF1.p2	2.856	MZF1 (MZF1B, ZSCAN6, MZF-1, Zfp98)
ATF4.p2	2.843	ATF4 (TAXREB67, CREB-2)
TCF4_dimer.p2	2.809	TCF4 (E2-2, ITF2, PTHS, SEF2, SEF2-1, SEF2-1A, SEF2-1B, bHLHb19, MGC149723, MGC149724)
MEF2{A,B,C,D}.p2	2.783	MEF2A (RSRFC4, RSRFC9) MEF2C MEF2D MEF2BNB-MEF2B (MEF2B, LOC729991-MEF2B) MEF2B (RSRFR2, FLJ32648)
PITX1..3.p2	2.766	PITX2 (IGDS, RS, Brx1, Otlx2, ARP1) PITX3 PITX1 (PTX1, POTX)
MAFB.p2	2.756	MAFB
GTF2A1,2.p2	2.691	GTF2A1 (TFIIA) GTF2A2 (TFIIA, HsT18745)
NHLH1,2.p2	2.609	NHLH1 (NSCL, NSCL1, bHLHa35) NHLH2 (NSCL2, bHLHa34)
CAGCAGG	2.588	hsa-miR-214 hsa-miR-761 hsa-miR-3619-5p
BPTF.p2	2.584	BPTF (FAC1, NURF301)
TBX4,5.p2	2.557	TBX5 TBX4
BACH2.p2	2.537	BACH2
CCCUGAG	2.529	hsa-miR-125a-5p hsa-miR-125b hsa-miR-4319
FOX{D1,D2}.p2	2.525	FOXD2 (FREAC9) FOXD1 (FREAC4)
FOXD3.p2	2.515	FOXD3 (Genesis, HFH2)
FOSL2.p2	2.506	FOSL2 (FRA2, FLJ23306)
ATF6.p2	2.493	ATF6 (ATF6A)
NR1H4.p2	2.493	NR1H4 (FXR, RIP14, HRR1, HRR-1)
AHR_ARNT_ARNT2.p2	2.487	ARNT (HIF-1beta, bHLHe2) AHR ARNT2 (KIAA0307, bHLHe1)
HES1.p2	2.461	HES1 (FLJ20408, HES-1, Hes1, bHLHb39)
ZFP161.p2	2.461	ZFP161 (ZNF478, ZBTB14)
EN1,2.p2	2.454	EN1 EN2
POU1F1.p2	2.426	POU1F1 (GHF-1)
STAT2,4,6.p2	2.418	STAT2 (STAT113) STAT4 STAT6 (D12S1644, IL-4-STAT)
UCAAGUA	2.391	hsa-miR-26a hsa-miR-26b hsa-miR-1297 hsa-miR-4465
NFE2L2.p2	2.386	NFE2L2 (NRF2)
EGR1..3.p2	2.377	EGR3 (PILOT) EGR1 (TIS8, G0S30, NGFI-A, KROX-24, ZIF-268, AT225, ZNF225) EGR2
MAZ.p2	2.376	MAZ (ZF87, Pur-1, Zif87, ZNF801)
TFEB.p2	2.361	TFEB
PAX5.p2	2.317	PAX5 (BSAP)
TFAP2B.p2	2.310	TFAP2B (AP2-B)
AGCACCA	2.304	hsa-miR-29a hsa-miR-29b hsa-miR-29c
TFAP2{A,C}.p2	2.269	TFAP2C (AP2-GAMMA, ERF1, TFAP2G, hAP-2g) TFAP2A (AP-2)
FOXP3.p2	2.247	FOXP3 (JM2, XPID, AIID, PIDX, DIETER, SCURFIN)
PAX2.p2	2.236	PAX2
ZBTB16.p2	2.235	ZBTB16 (PLZF)
DMAP1_NCOR{1,2}_SMARC.p2	2.229	SMARCA1 (SNF2LB, NURF140, ISWI, SWI) SMARCC2 (BAF170, Rsc8, CRACC2) SMARCA5 (hSNF2H, hISWI, ISWI) NCOR1 (N-CoR, hCIT529I10, TRAC1, hN-CoR, KIAA1047, MGC104216) NCOR2 (SMRT, SMRTE, TRAC-1, CTG26, TNRC14) DMAP1 (DNMAP1, FLJ11543, KIAA1425, DNMTAP1, EAF2, SWC4)
FOXA2.p3	2.206	FOXA2
FEV.p2	2.193	FEV (PET-1, HSRNAFEV)
NR5A1,2.p2	2.191	NR5A1 (FTZ1, SF-1, ELP, AD4BP) NR5A2 (FTZ-F1beta, hB1F, LRH-1, FTZ-F1, hB1F-2, B1F2)
NKX2-2,8.p2	2.180	NKX2-2 (NKX2.2) NKX2-8 (NKX2.8, Nkx2-9)
AAAGUGC	2.163	hsa-miR-17 hsa-miR-20a hsa-miR-20b hsa-miR-93 hsa-miR-106a hsa-miR-106b hsa-miR-519d
STAT1,3.p3	2.163	STAT1 (STAT91, ISGF-3) STAT3 (APRF)
SOX17.p2	2.145	SOX17
SP1.p2	2.136	SP1
ZNF148.p2	2.128	ZNF148 (BERF-1, ZBP-89, BFCOL1, HT-BETA, ZFP148, pHZ-52)
TP53.p2	2.109	TP53 (p53, LFS1)
EP300.p2	2.105	EP300 (p300, KAT3B)
AAUACUG	2.094	hsa-miR-200b hsa-miR-200c hsa-miR-429
NANOG{mouse}.p2	2.089	NANOG (FLJ12581, FLJ40451)
GUGCAAA	2.082	hsa-miR-19a hsa-miR-19b
GAGGUAG	2.072	hsa-let-7a hsa-let-7b hsa-let-7c hsa-let-7d hsa-let-7e hsa-let-7f hsa-let-7g hsa-let-7i hsa-miR-98 hsa-miR-4458 hsa-miR-4500
HBP1_HMGB_SSRP1_UBTF.p2	2.060	HMGB2 HMGB3 (HMG2A, MGC90319) SSRP1 (FACT80) UBTF (UBF, NOR-90) HBP1
ALX1.p2	2.032	ALX1
UCCCUUU	2.032	hsa-miR-204 hsa-miR-211
HOX{A5,B5}.p2	2.028	HOXB5 HOXA5
UCCAGUU	2.026	hsa-miR-145
NKX3-2.p2	2.020	NKX3-2 (NKX3B, NKX3.2)
FOS_FOS{B,L1}_JUN{B,D}.p2	2.013	FOS (c-fos, AP-1) JUNB FOSL1 (fra-1) JUND (AP-1) FOSB (G0S3, GOSB, GOS3, AP-1, MGC42291, DKFZp686C0818)
RXR{A,B,G}.p2	2.012	RXRA (NR2B1) RXRB (NR2B2, H-2RIIBP, RCoR-1) RXRG (NR2B3)
FOXN1.p2	1.996	FOXN1 (FKHL20)
ATF2.p2	1.992	ATF2 (TREB7, CRE-BP1, HB16)
UCACAUU	1.991	hsa-miR-23a hsa-miR-23b hsa-miR-23c
TFAP4.p2	1.961	TFAP4 (AP-4)
CUUUGGU	1.959	hsa-miR-9
GFI1.p2	1.947	GFI1
EBF1.p2	1.937	EBF1 (OLF1)
NFIX.p2	1.920	NFIX (NF1A)
GLI1..3.p2	1.898	GLI1 GLI2 (THP2, HPE9, THP1) GLI3 (PAP-A, PAPA, PAPA1, PAPB, ACLS, PPDIV)
AR.p2	1.896	AR (AIS, NR3C4, SMAX1, HUMARA)
CREB1.p2	1.890	CREB1
LEF1_TCF7_TCF7L1,2.p2	1.879	TCF7 (TCF-1) TCF7L2 (TCF-4) LEF1 (TCF1ALPHA) TCF7L1
RXRG_dimer.p3	1.878	NR1H2 (NER, NER-I, RIP15, LXR-b) RXRA (NR2B1) PPARG (PPARG1, PPARG2, NR1C3, PPARgamma) PPARA (hPPAR, NR1C1) RXRB (NR2B2, H-2RIIBP, RCoR-1) RXRG (NR2B3)
TAL1_TCF{3,4,12}.p2	1.870	TCF3 (E2A, ITF1, MGC129647, MGC129648, bHLHb21) TCF4 (SEF2-1B, ITF2, bHLHb19) TAL1 (SCL, bHLHa17) TCF12 (HEB, HTF4, HsT17266, bHLHb20)
ZNF384.p2	1.866	ZNF384 (CAGH1A, CIZ, NMP4, NP)
SOX2.p2	1.852	SOX2
FOX{I1,J2}.p2	1.850	FOXI1 (FREAC6) FOXJ2 (FHX)
ESR1.p2	1.849	ESR1 (NR3A1, Era)
LMO2.p2	1.841	LMO2 (TTG2, RHOM2, RBTN2)
NR4A2.p2	1.837	NR4A2 (NOT, RNR1, HZF-3, NURR1, TINUR)
NFE2L1.p2	1.836	NFE2L1 (NRF1, LCR-F1, FLJ00380, TCF11)
SOX{8,9,10}.p2	1.831	SOX9 (SRA1) SOX8 SOX10 (DOM, WS4, WS2E)
DBP.p2	1.826	DBP (DABP)
AGUGGUU	1.825	hsa-miR-140-5p
UGCAUAG	1.825	hsa-miR-153
NKX2-3_NKX2-5.p2	1.809	NKX2-5 (CSX1, NKX2.5, NKX4-1) NKX2-3 (NKX2.3, CSX3, NKX4-3)
FOX{C1,C2}.p2	1.805	FOXC1 (FREAC3, ARA, IGDA, IHG1) FOXC2 (MFH-1)
GUAGUGU	1.783	hsa-miR-142-3p
UGAAAUG	1.758	hsa-miR-203
PATZ1.p2	1.758	PATZ1 (MAZR, dJ400N23, ZBTB19, ZSG, RIAZ, PATZ)
NFATC1..3.p2	1.752	NFATC3 (NFAT4, NFATX) NFATC2 (NF-ATP, NFATp, NFAT1) NFATC1 (NF-ATC, NFATc, NFAT2)
PAX4.p2	1.746	PAX4
GGAAGAC	1.745	hsa-miR-7
CACAGUG	1.741	hsa-miR-128
PPARG.p2	1.730	PPARG (PPARG1, PPARG2, NR1C3, PPARgamma)
ZNF423.p2	1.718	ZNF423 (KIAA0760, OAZ, Roaz, Ebfaz, Zfp104)
PRRX1,2.p2	1.717	PRRX2 (PRX2, PMX2) PRRX1 (PHOX1)
ZEB1.p2	1.709	ZEB1 (BZP, ZEB, AREB6, NIL-2-A, Zfhep, Zfhx1a)
IKZF2.p2	1.704	IKZF2 (Helios)
TLX2.p2	1.703	TLX2 (Enx, Tlx2, NCX)
PBX1.p2	1.691	PBX1
ZBTB6.p2	1.651	ZBTB6 (ZID)
SRY.p2	1.633	SRY (TDF)
PRDM1.p3	1.628	PRDM1 (PRDI-BF1)
AIRE.p2	1.619	AIRE (PGA1, APS1)
NR3C1.p2	1.614	NR3C1 (GR)
CTCF.p2	1.610	CTCF
SREBF1,2.p2	1.607	SREBF1 (SREBP1, bHLHd1) SREBF2 (SREBP2, bHLHd2)
IKZF1.p2	1.601	IKZF1 (hIk-1, LyF-1, Hs.54452, IKAROS)
SPZ1.p2	1.573	SPZ1 (NYD-TSP1, FLJ25709)
POU5F1_SOX2{dimer}.p2	1.569	POU5F1 (OCT3, Oct4, MGC22487) SOX2
GUAAACA	1.565	hsa-miR-30a hsa-miR-30b hsa-miR-30c hsa-miR-30d hsa-miR-30e
RBPJ.p2	1.562	RBPJ (SUH, IGKJRB, RBPJK, KBF2, RBP-J, CBF1)
AUGGCUU	1.559	hsa-miR-135a hsa-miR-135b
HSF1,2.p2	1.549	HSF1 (HSTF1) HSF2
UUGGUCC	1.543	hsa-miR-133a hsa-miR-133b
ZNF238.p2	1.538	ZNF238 (C2H2-171, TAZ-1, RP58, ZBTB18)
RXRA_VDR{dimer}.p2	1.534	VDR (NR1I1)
ACAUUCA	1.528	hsa-miR-181a hsa-miR-181b hsa-miR-181c hsa-miR-181d hsa-miR-4262
ADNP_IRX_SIX_ZHX.p2	1.499	SIX5 ZHX1 IRX4 ADNP (KIAA0784, ADNP1) ZHX3 (KIAA0395) ZHX2 (KIAA0854) IRX5 (IRX-2a) SIX2
FOXO1,3,4.p2	1.482	FOXO1 (FKH1) FOXO4 (AFX1) FOXO3 (AF6q21, FOXO2)
HOX{A4,D4}.p2	1.451	HOXA4 HOXD4
MSX1,2.p2	1.442	MSX1 (HYD1, OFC5) MSX2 (CRS2, FPP, HOX8, MSH, PFM)
ONECUT1,2.p2	1.432	ONECUT2 (OC-2) ONECUT1 (HNF-6)
GAGAUGA	1.421	hsa-miR-143 hsa-miR-4770
NKX2-1,4.p2	1.419	NKX2-1 (TTF-1) NKX2-4 (NKX2.4)
UAUUGCU	1.417	hsa-miR-137
HLF.p2	1.400	HLF (MGC33822)
FOX{F1,F2,J1}.p2	1.389	FOXF2 (FREAC2) FOXJ1 (HFH-4, HFH4) FOXF1 (FREAC1)
POU6F1.p2	1.385	POU6F1 (BRN5, MPOU, TCFB1)
ACAGUAU	1.384	hsa-miR-144
AGUGCAA	1.382	hsa-miR-130a hsa-miR-130b hsa-miR-301a hsa-miR-301b hsa-miR-454 hsa-miR-3666 hsa-miR-4295
HMGA1,2.p2	1.375	HMGA1 HMGA2 (BABL, LIPO)
AGCAGCA	1.371	hsa-miR-15a hsa-miR-15b hsa-miR-16 hsa-miR-195 hsa-miR-424 hsa-miR-497
AACACUG	1.358	hsa-miR-141 hsa-miR-200a
FOXL1.p2	1.351	FOXL1 (FREAC7, FKH6)
CCAGCAU	1.351	hsa-miR-338-3p
GCAGCAU	1.344	hsa-miR-103a hsa-miR-107
CDX1,2,4.p2	1.343	CDX1 CDX2 CDX4
SOX5.p2	1.338	SOX5 (L-SOX5, MGC35153)
FOXQ1.p2	1.323	FOXQ1 (HFH1)
AUUGCAC	1.318	hsa-miR-25 hsa-miR-32 hsa-miR-92a hsa-miR-92b hsa-miR-363 hsa-miR-367
NFE2.p2	1.304	NFE2 (NF-E2)
UUGUUCG	1.300	hsa-miR-375
AAGUGCU	1.297	hsa-miR-302a hsa-miR-302b hsa-miR-302c hsa-miR-302d hsa-miR-302e hsa-miR-372 hsa-miR-373 hsa-miR-520a-3p hsa-miR-520b hsa-miR-520c-3p hsa-miR-520d-3p hsa-miR-520e
NFIL3.p2	1.289	NFIL3 (E4BP4, NFIL3A, NF-IL3A)
GCUGGUG	1.286	hsa-miR-138
NANOG.p2	1.282	NANOG (FLJ12581, FLJ40451)
GUCAGUU	1.277	hsa-miR-223
HMX1.p2	1.268	HMX1 (H6, NKX5-3)
NR6A1.p2	1.264	NR6A1 (GCNF1, RTR)
LHX3,4.p2	1.257	LHX3 LHX4 (Gsh4)
EOMES.p2	1.256	EOMES (TBR2)
GAUUGUC	1.255	hsa-miR-219-5p hsa-miR-4782-3p
ACAGUAC	1.250	hsa-miR-101
AGCUGCC	1.240	hsa-miR-22
CEBPA,B_DDIT3.p2	1.237	DDIT3 (CHOP10, GADD153, CHOP) CEBPA (C/EBP-alpha) CEBPB (LAP, CRP2, NFIL6, IL6DBP)
MYBL2.p2	1.228	MYBL2 (BMYB, B-MYB)
EWSR1-FLI1.p2	1.211	FLI1 (EWSR2, SIC-1) EWSR1 (EWS, K984G1.4)
CCAGUGU	1.203	hsa-miR-199a-5p hsa-miR-199b-5p
RORA.p2	1.193	RORA (RZRA, ROR1, ROR2, ROR3, NR1F1)
UUGGCAC	1.180	hsa-miR-96 hsa-miR-1271
NKX3-1.p2	1.177	NKX3-1 (NKX3.1, BAPX2)
CDC5L.p2	1.172	CDC5L (PCDC5RP, hCDC5, CEF1)
GAGAACU	1.165	hsa-miR-146a hsa-miR-146b-5p
UUGGCAA	1.153	hsa-miR-182
AUGGCAC	1.152	hsa-miR-183
UAAUGCU	1.140	hsa-miR-155
CAGUGCA	1.119	hsa-miR-148a hsa-miR-148b hsa-miR-152
NKX6-1,2.p2	1.074	NKX6-1 (Nkx6.1) NKX6-2 (NKX6B, GTX, NKX6.1)
AACAGUC	1.066	hsa-miR-132 hsa-miR-212
POU3F1..4.p2	1.046	POU3F1 (OCT6, SCIP) POU3F3 (BRN1, OTF8) POU3F2 (POUF3, BRN2, OCT7) POU3F4 (BRN4, OTF9)
CUX2.p2	1.042	CUX2 (KIAA0293, CDP2)
UCACAGU	1.040	hsa-miR-27a hsa-miR-27b
GUAACAG	1.033	hsa-miR-194
AGCUUAU	1.006	hsa-miR-21 hsa-miR-590-5p
UAAGACG	1.004	hsa-miR-208a hsa-miR-208b
STAT5{A,B}.p2	1.003	STAT5B STAT5A (MGF)
CRX.p2	1.000	CRX (CRD, LCA7, OTX3)
GFI1B.p2	0.997	GFI1B
CUACAGU	0.996	hsa-miR-139-5p
GGCAAGA	0.985	hsa-miR-31
AAGGUGC	0.979	hsa-miR-18a hsa-miR-18b hsa-miR-4735-3p
T.p2	0.947	T
HOXA9_MEIS1.p2	0.921	MEIS1 HOXA9
GAUCAGA	0.916	hsa-miR-383
AUGUGCC	0.841	hsa-miR-455-5p
GCUACAU	0.838	hsa-miR-221 hsa-miR-222
CCUUCAU	0.815	hsa-miR-205
AGGUAGU	0.812	hsa-miR-196a hsa-miR-196b
CGUGUCU	0.796	hsa-miR-187
AAUGCCC	0.796	hsa-miR-365
UAAGACU	0.791	hsa-miR-499-5p
ARID5B.p2	0.790	ARID5B (FLJ21150, MRF2)
PAX6.p2	0.752	PAX6 (D11S812E, AN, WAGR)
ACCCUGU	0.750	hsa-miR-10a hsa-miR-10b
AGCAGCG	0.715	hsa-miR-503
GGAGUGU	0.665	hsa-miR-122
AAUCUCU	0.656	hsa-miR-216b
AACGGAA	0.610	hsa-miR-191
AACCUGG	0.591	hsa-miR-490-3p
VSX1,2.p2	0.584	VSX2 (RET1) VSX1 (PPD)
ACUGGCC	0.579	hsa-miR-193a-3p hsa-miR-193b
AUGACAC	0.578	hsa-miR-425
PDX1.p2	0.575	PDX1 (IDX-1, STF-1, PDX-1, MODY4)
UGCAUUG	0.565	hsa-miR-33a hsa-miR-33b
GGACGGA	0.562	hsa-miR-184
ACUGCAU	0.536	hsa-miR-217
CGUACCG	0.487	hsa-miR-126
GZF1.p2	0.429	GZF1 (dJ322G13.2, ZBTB23)
GAUAUGU	0.404	hsa-miR-190 hsa-miR-190b
UGUGCGU	0.399	hsa-miR-210
PAX3,7.p2	0.369	PAX7 (Hup1) PAX3 (HUP2)
AAUCUCA	0.354	hsa-miR-216a
UGACCUA	0.349	hsa-miR-192 hsa-miR-215
AACCGUU	0.327	hsa-miR-451
PAX8.p2	0.284	PAX8
ACCCGUA	0.069	hsa-miR-99a hsa-miR-99b hsa-miR-100