ISMARA results: 02_GSM710383_05_HMLE-24hi

Sample name: 02_GSM710383_05_HMLE-24hi_b

Sorted Z-values histogram for the sample 02_GSM710383_05_HMLE-24hi_b

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
SNAI1..3.p2	8.102	SNAI2 SNAI1 SNAI3
bHLH_family.p2	4.378	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
HNF4A_NR2F1,2.p2	4.378	NR2F1 NR2F2 HNF4A
ZEB1.p2	4.286	ZEB1
FOS_FOS{B,L1}_JUN{B,D}.p2	4.269	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
NR4A2.p2	4.047	NR4A2
HMX1.p2	3.322	HMX1
NFKB1_REL_RELA.p2	3.260	RELA REL NFKB1
PATZ1.p2	3.246	PATZ1
CCCUGAG	3.112
TP53.p2	3.027	TP53
CAGCAGG	2.956
HIF1A.p2	2.345	HIF1A
POU2F1..3.p2	2.269	POU2F2 POU2F1 POU2F3
BPTF.p2	2.205	BPTF
AGCAGCA	2.083
HAND1,2.p2	2.045	HAND1 HAND2
EBF1.p2	1.981	EBF1
MEF2{A,B,C,D}.p2	1.906	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
EN1,2.p2	1.876	EN1 EN2
TFAP2B.p2	1.793	TFAP2B
PITX1..3.p2	1.788	PITX2 PITX3 PITX1
AGCAGCG	1.765
NANOG.p2	1.742	NANOG
CEBPA,B_DDIT3.p2	1.712	DDIT3 CEBPA CEBPB
HLF.p2	1.667	HLF
IKZF1.p2	1.660	IKZF1
FEV.p2	1.641	FEV
FOX{F1,F2,J1}.p2	1.578	FOXF2 FOXJ1 FOXF1
POU5F1.p2	1.558	POU5F1
NKX3-1.p2	1.532	NKX3-1
ATF4.p2	1.520	ATF4
FOXA2.p3	1.476	FOXA2
ESRRA.p2	1.458	ESRRA
TBP.p2	1.448	TBP
NKX3-2.p2	1.431	NKX3-2
YY1.p2	1.398	YY1
MAZ.p2	1.390	MAZ
HMGA1,2.p2	1.286	HMGA1 HMGA2
CRX.p2	1.263	CRX
SP1.p2	1.251	SP1
HES1.p2	1.246	HES1
GGCUCAG	1.214
TFAP2{A,C}.p2	1.089	TFAP2C TFAP2A
SOX{8,9,10}.p2	1.023	SOX9 SOX8 SOX10
ATF5_CREB3.p2	0.980	ATF5 CREB3
SMAD1..7,9.p2	0.965	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
NKX2-1,4.p2	0.953	NKX2-1 NKX2-4
AAAGUGC	0.951
FOXQ1.p2	0.939	FOXQ1
NR5A1,2.p2	0.938	NR5A1 NR5A2
AGCUGCC	0.933
NKX2-3_NKX2-5.p2	0.909	NKX2-5 NKX2-3
FOX{D1,D2}.p2	0.894	FOXD2 FOXD1
AHR_ARNT_ARNT2.p2	0.864	ARNT AHR ARNT2
AUGGCUU	0.838
HNF1A.p2	0.808	HNF1A
FOXP3.p2	0.805	FOXP3
HIC1.p2	0.795	HIC1
GCUGGUG	0.783
RORA.p2	0.778	RORA
ELF1,2,4.p2	0.758	ELF2 ELF1 ELF4
ZBTB6.p2	0.756	ZBTB6
LMO2.p2	0.735	LMO2
FOX{I1,J2}.p2	0.727	FOXI1 FOXJ2
AAGUGCU	0.708
KLF4.p3	0.675	KLF4
GTF2A1,2.p2	0.663	GTF2A1 GTF2A2
ETS1,2.p2	0.641	ETS2 ETS1
GFI1B.p2	0.636	GFI1B
ARID5B.p2	0.617	ARID5B
SOX2.p2	0.597	SOX2
GLI1..3.p2	0.580	GLI1 GLI2 GLI3
PPARG.p2	0.560	PPARG
RREB1.p2	0.546	RREB1
EP300.p2	0.527	EP300
SPZ1.p2	0.523	SPZ1
RXRA_VDR{dimer}.p2	0.517	VDR	$logo of RXRA_VDR{dimer}.p2$
EWSR1-FLI1.p2	0.516	FLI1 EWSR1
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	0.503	ARNT MAX MYC USF1 BHLHB2 ARNT2
PAX6.p2	0.485	PAX6
TCF4_dimer.p2	0.484	TCF4
T.p2	0.469	T
SPIB.p2	0.452	SPIB
RBPJ.p2	0.444	RBPJ
HOX{A5,B5}.p2	0.430	HOXB5 HOXA5
CDC5L.p2	0.375	CDC5L
CCAGCAU	0.360
PBX1.p2	0.347	PBX1
NANOG{mouse}.p2	0.330	NANOG
AAUGCCC	0.314
ACCCUGU	0.305
POU3F1..4.p2	0.301	POU3F1 POU3F3 POU3F2 POU3F4
UCAAGUA	0.296
ACAGUAC	0.271
TLX1..3_NFIC{dimer}.p2	0.261	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
GAGGUAG	0.249
HSF1,2.p2	0.243	HSF1 HSF2
VSX1,2.p2	0.239	VSX2 VSX1
GATA6.p2	0.236	GATA6
KLF12.p2	0.233	KLF12
NR3C1.p2	0.232	NR3C1
UUGGCAC	0.231
GAUAUGU	0.225
AACCGUU	0.221
PAX8.p2	0.212	PAX8
ZBTB16.p2	0.201	ZBTB16
NR6A1.p2	0.191	NR6A1
GGACGGA	0.190
ALX1.p2	0.174	ALX1
PAX3,7.p2	0.173	PAX7 PAX3
CGUACCG	0.170
UAUUGCU	0.165
HOXA9_MEIS1.p2	0.161	MEIS1 HOXA9
SRY.p2	0.159	SRY
FOXN1.p2	0.144	FOXN1
CAGUGCA	0.141
GUAACAG	0.097
GGAGUGU	0.096
AACCUGG	0.089
FOSL2.p2	0.088	FOSL2
PDX1.p2	0.082	PDX1
JUN.p2	0.080	JUN JUND JUNB
CTCF.p2	0.076	CTCF
AGCUUAU	0.074
UGCAUAG	0.059
GAGAUGA	0.048
BACH2.p2	0.038	BACH2
ACCCGUA	0.037
NFE2.p2	0.030	NFE2
UUGGCAA	0.030
ZNF238.p2	0.023	ZNF238
PAX4.p2	0.020	PAX4
POU6F1.p2	0.010	POU6F1
RXR{A,B,G}.p2	0.002	RXRA RXRB RXRG
GGCAAGA	-0.018
AAUCUCA	-0.019
AUGGCAC	-0.024
FOXD3.p2	-0.032	FOXD3
UAAUGCU	-0.036
UGUGCGU	-0.041
GAUCAGA	-0.059
ACAGUAU	-0.062
POU1F1.p2	-0.068	POU1F1
AR.p2	-0.071	AR
POU5F1_SOX2{dimer}.p2	-0.116	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
MTF1.p2	-0.127	MTF1
AUGUGCC	-0.136
AAUCUCU	-0.138
CUACAGU	-0.141
CUUUGGU	-0.144
CUX2.p2	-0.145	CUX2
UGUGCUU	-0.145
EOMES.p2	-0.151	EOMES
NKX6-1,2.p2	-0.158	NKX6-1 NKX6-2
ACUGCAU	-0.160
SPI1.p2	-0.184	SPI1
UCCAGUU	-0.192
GGCAGUG	-0.192
AACGGAA	-0.201
FOXL1.p2	-0.209	FOXL1
NR1H4.p2	-0.212	NR1H4
AAGGCAC	-0.232
REST.p3	-0.236	REST
PAX5.p2	-0.238	PAX5
NFIL3.p2	-0.244	NFIL3
GZF1.p2	-0.251	GZF1
GUCAGUU	-0.258
GCUACAU	-0.267
AGGUAGU	-0.287
LHX3,4.p2	-0.288	LHX3 LHX4
ACUGGCC	-0.296
DMAP1_NCOR{1,2}_SMARC.p2	-0.297	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
ONECUT1,2.p2	-0.312	ONECUT2 ONECUT1
SOX17.p2	-0.317	SOX17
GUAGUGU	-0.320
NFIX.p2	-0.325	NFIX
UGACCUA	-0.347
UGCAUUG	-0.348
CGUGUCU	-0.350
STAT2,4,6.p2	-0.357	STAT2 STAT4 STAT6
AUGACAC	-0.364
GAUUGUC	-0.377
UCACAUU	-0.394
MYB.p2	-0.401	MYB
CCUUCAU	-0.425
ZNF148.p2	-0.444	ZNF148
TAL1_TCF{3,4,12}.p2	-0.445	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
ESR1.p2	-0.450	ESR1
EVI1.p2	-0.502	EVI1
ZIC1..3.p2	-0.516	ZIC1 ZIC2 ZIC3
AGUGGUU	-0.518
ZNF423.p2	-0.521	ZNF423
CACAGUG	-0.547
SOX5.p2	-0.550	SOX5
GTF2I.p2	-0.555	GTF2I
MYOD1.p2	-0.561	MYOD1
LEF1_TCF7_TCF7L1,2.p2	-0.563	TCF7 TCF7L2 LEF1 TCF7L1
TBX4,5.p2	-0.566	TBX5 TBX4
FOX{C1,C2}.p2	-0.582	FOXC1 FOXC2
UAAGACU	-0.586
NFE2L1.p2	-0.593	NFE2L1
MSX1,2.p2	-0.616	MSX1 MSX2
ELK1,4_GABP{A,B1}.p3	-0.642	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
AIRE.p2	-0.649	AIRE
ATF2.p2	-0.654	ATF2
GAGAACU	-0.662
MYBL2.p2	-0.684	MYBL2
STAT1,3.p3	-0.705	STAT1 STAT3
RFX1..5_RFXANK_RFXAP.p2	-0.712	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
TLX2.p2	-0.719	TLX2
NFE2L2.p2	-0.732	NFE2L2
UUGUUCG	-0.751
HBP1_HMGB_SSRP1_UBTF.p2	-0.757	HMGB2 HMGB3 SSRP1 UBTF HBP1
UAAGACG	-0.762
SRF.p3	-0.772	SRF
GFI1.p2	-0.857	GFI1
DBP.p2	-0.881	DBP
HOX{A6,A7,B6,B7}.p2	-1.007	HOXB6 HOXA7 HOXB7 HOXA6
HOX{A4,D4}.p2	-1.025	HOXA4 HOXD4
NKX2-2,8.p2	-1.030	NKX2-2 NKX2-8
UCACAGU	-1.062
RXRG_dimer.p3	-1.063	NR1H2 RXRA PPARG PPARA RXRB RXRG
STAT5{A,B}.p2	-1.074	STAT5B STAT5A
CREB1.p2	-1.081	CREB1
GGAAGAC	-1.106
IRF1,2,7.p3	-1.121	IRF1 IRF2 IRF7
GUGCAAA	-1.144
GUAAACA	-1.150
CCAGUGU	-1.164
EGR1..3.p2	-1.183	EGR3 EGR1 EGR2
UCCCUUU	-1.225
CDX1,2,4.p2	-1.288	CDX1 CDX2 CDX4
UGAAAUG	-1.289
PAX2.p2	-1.317	PAX2
AUUGCAC	-1.333
NFATC1..3.p2	-1.349	NFATC3 NFATC2 NFATC1
NFY{A,B,C}.p2	-1.372	NFYC NFYB NFYA
TFCP2.p2	-1.377	TFCP2
EHF.p2	-1.389	EHF
E2F1..5.p2	-1.394	E2F4 E2F5 E2F2 E2F1 E2F3
AAGGUGC	-1.425
TFDP1.p2	-1.445	TFDP1
AGUGCAA	-1.494
FOXO1,3,4.p2	-1.536	FOXO1 FOXO4 FOXO3
ACAUUCA	-1.547
SREBF1,2.p2	-1.550	SREBF1 SREBF2
PRDM1.p3	-1.607	PRDM1
PRRX1,2.p2	-1.628	PRRX2 PRRX1
UUGGUCC	-1.629
AACAGUC	-1.637
ADNP_IRX_SIX_ZHX.p2	-1.638	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
ZFP161.p2	-1.669	ZFP161
MZF1.p2	-1.789	MZF1
ATF6.p2	-1.827	ATF6
CUCCCAA	-1.827
GGAAUGU	-1.924
AAUACUG	-1.963
GATA1..3.p2	-2.028	GATA1 GATA2 GATA3
ZNF143.p2	-2.113	ZNF143
NRF1.p2	-2.193	NRF1
RUNX1..3.p2	-2.212	RUNX1 RUNX3 RUNX2
TFAP4.p2	-2.297	TFAP4
GCAGCAU	-2.330
TEAD1.p2	-2.392	TEAD1 TEAD2 TEAD3 TEAD4
TFEB.p2	-2.450	TFEB
XBP1.p3	-2.694	XBP1
AGCACCA	-2.696
MAFB.p2	-2.731	MAFB
IKZF2.p2	-2.761	IKZF2
ZNF384.p2	-2.862	ZNF384
TGIF1.p2	-2.942	TGIF1
NHLH1,2.p2	-2.980	NHLH1 NHLH2
AACACUG	-3.005
MYFfamily.p2	-3.412	MYOD1 MYF6 MYF5 MYOG
UUUUUGC	-4.295

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Sample name: 02_GSM710383_05_HMLE-24hi_b

Sorted z-values for every WM.