• All motifs sorted by activity significance
• All samples sorted alphabetically

• Activities table
• Activity deltas table
• Regulatory interactions
• Motifs sorted by significance (text)

ISMARA results for GNF SymAtlas, mouse (Lattin, 2008)

ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.

All motifs sorted by activity significance

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Showing 1 to 274 of 274 entries

Motif name	Z-value	Associated genes	Profile	Logo
IRF1,2,7.p3	7.114	Irf1 (Irf-1) Irf2 (Irf-2) Irf7
E2F1..5.p2	6.191	E2f4 E2f5 (E2F-5) E2f2 E2f1 (E2F-1) E2f3 (E2F3b, E2f3a)
RFX1..5_RFXANK_RFXAP.p2	5.544	Rfx1 Rfxap Rfx5 Rfxank (Tvl1) Rfx4 Rfx3 (MRFX3) Rfx2
REST.p3	5.393	Rest (NRSF)
SPIB.p2	5.102	Spib (Spi-B)
NRF1.p2	4.836	Nrf1 (D6Ertd415e)
HNF1A.p2	4.743	Hnf1a (hepatocyte nuclear factor 1, HNF1, Hnf-1, Hnf1alpha, HNF1-alpha, LFB1, Tcf1, HNF1[a])
GATA1..3.p2	4.339	Gata1 (Gata-1, Gf-1) Gata2 (Gata-2) Gata3 (Gata-3)
SPI1.p2	4.314	Sfpi1 (Sfpi-1, PU.1, Spi-1, Tcfpu1, Dis-1, Tfpu.1)
MEF2{A,B,C,D}.p2	4.296	Mef2a Mef2c Mef2d Mef2b
TEAD1.p2	4.292	Tead1 (Gtrgeo5, TEAD-1, TEF-1, mTEF-1, Tcf13) Tead2 (Etdf, TEF-4, TEAD-2) Tead3 (TEAD-3, Tcf13r2, TEF-5, DTEF-1, ETFR-1) Tead4 (ETFR-2a, TEF-3, Tef3, TEAD-4, Etfr2, Tefr, Tcf13r1, Tefr1a)
NFKB1_REL_RELA.p2	4.218	Rela (p65 NF kappaB, p65) Rel (c-Rel) Nfkb1 (nuclear factor kappaB p50, NF-kappaB p50, p50, NF-kappaB, p50/p105, p50 subunit of NF kappaB, NF kappaB1)
ELK1,4_GABP{A,B1}.p3	3.986	Gabpa (GABPalpha) Gabpb1 (NRF2B2, E4TF1-47, BABPB2, E4TF1, NRF2B1, E4Tf1B, GABPB1-1, GABPB1-2, E4TF1-53) Elk4 (Sap1) Elk1 (Elk-1)
HOX{A6,A7,B6,B7}.p2	3.958	Hoxb6 (Hox-2.2) Hoxa7 (Hox-1.1) Hoxb7 (Hox-2.3) Hoxa6 (Hox-1.2)
YY1.p2	3.957	Yy1 (Yin Yang 1, delta transcription factor, UCRBP transcription factor, NF-E1)
MYB.p2	3.848	Myb (c-myb)
ZNF143.p2	3.828	Zfp143 (KRAB14, Zfp80-rs1, Zfp79, Staf, D7Ertd805e, pHZ-1)
TBP.p2	3.761	Tbp (Gtf2d)
HNF4A_NR2F1,2.p2	3.682	Nr2f1 (COUP-TF1, Tcfcoup1, Erbal3, COUP-TFI) Nr2f2 (Tcfcoup2, COUP-TFII, ARP-1, EAR3, COUP-TF2, Aporp1) Hnf4a (Tcf4, Hnf4, Tcf14, Nuclear receptor 2A1, Nr2a1, HNF4 alpha, HNF-4, MODY1)
XBP1.p3	3.573	Xbp1 (D11Ertd39e, TREB5, TREB-5, XBP-1)
ELF1,2,4.p2	3.557	Elf2 (NERF-2) Elf1 (p70, Elf-1, mElf-1) Elf4 (myeloid elf-1 like factor, MEF)
TLX1..3_NFIC{dimer}.p2	3.538	Tlx1 (Hox-11, Hox11) Tlx3 (Rnx, Tlx1l2, Hox11l2)
NFY{A,B,C}.p2	3.391	Nfyc Nfyb (Cbf-A) Nfya (Sez10, Cbf-b)
NR5A1,2.p2	3.359	Nr5a1 (Ad4BP, ELP, adrenal 4-binding protein, SF1, Ftz-F1, Ftzf1, SF-1, steroidogenic factor 1) Nr5a2 (D1Ertd308e, Ftf, LRH-1)
SRF.p3	3.336	Srf
GATA6.p2	3.262	Gata6
ZFP161.p2	3.179	Zfp161 (ZF5)
PITX1..3.p2	3.153	Pitx2 (solurshin, Munc30, Brx1, Brx1a, Pitx2a, Pitx2b, Brx1b, Pitx2c, Otlx2, Rieg, Ptx2) Pitx3 (Ptx3) Pitx1 (P-OTX, Potx, Bft, Ptx1)
SNAI1..3.p2	3.087	Snai2 (Snail2, Slugh, Slug) Snai1 (Sna, Snail1, Snail, Sna1) Snai3 (Smuc, Snail-related gene from muscle cells, Zfp293)
MAFB.p2	3.050	Mafb (Krml, Kreisler, Krml1)
RUNX1..3.p2	3.019	Runx1 (AML1, runt domain, alpha subunit 2, Pebp2a2, Cbfa2) Runx3 (Cbfa3, AML2) Runx2 (SL3-3 enhancer factor 1, AML3, polyomavirus enhancer binding factor 2 (PEBP2), PEBP2 alpha A, PEBP2aA, Cbfa1, Pebpa2a, Osf2)
TFCP2.p2	2.914	Tcfcp2 (UBP-1, CP-2, CP2, LBP-1d, LBP1, LBP-1c, LSF)
UGUGCUU	2.907	mmu-miR-218
FEV.p2	2.872	Fev (Pet1, mPet-1)
ETS1,2.p2	2.832	Ets2 (Ets-2) Ets1 (Tpl1, p51Ets-1, p42Ets-1, Ets-1)
ESRRA.p2	2.822	Esrra (ERRalpha, Estrra, Err1, Nr3b1)
KLF4.p3	2.797	Klf4 (EZF, Zie, Gklf)
KLF12.p2	2.777	Klf12 (AP-2rep)
TFAP2{A,C}.p2	2.761	Tcfap2c (AP2gamma, Ap-2.2, Stra2) Tcfap2a (AP-2 alpha, AP2alpha, Ap2tf, Ap-2 (a), Ap2)
MTF1.p2	2.688	Mtf1 (MTF-1, metal response element-binding transcription factor 1, metalloregulatory transcription factor, Thyls)
AAGGCAC	2.655	mmu-miR-124
TFDP1.p2	2.625	Tfdp1 (Dp1, Drtf1)
HBP1_HMGB_SSRP1_UBTF.p2	2.587	Hmgb2 (Hmg2, HMG-2) Hmgb3 (Hmg2a, Hmg4) Ssrp1 (Hmg1-rs1, Hmgox, Hmgi-rs3, T160) Ubtf (UBF1, UBF, Tcfubf) Hbp1 (C86454)
FOS_FOS{B,L1}_JUN{B,D}.p2	2.520	Fos (cFos, c-fos, D12Rfj1) Junb Fosl1 (fra-1, Fra1) Jund Fosb
ZEB1.p2	2.499	Zeb1 (Zfx1a, Zfhx1a, MEB1, AREB6, [delta]EF1, ZEB, Tcf8, Zfhep, Tcf18, Nil2)
ZBTB6.p2	2.394	Zbtb6 (Zfp482)
AGCACCA	2.379	mmu-miR-29a mmu-miR-29b mmu-miR-29c
DMAP1_NCOR{1,2}_SMARC.p2	2.361	Smarca1 (Snf2l) Smarcc2 Smarca5 (Snf2h, MommeD4) Ncor1 (N-CoR, Rxrip13) Ncor2 (SMRTe, SMRT) Dmap1
PRDM1.p3	2.358	Prdm1 (PRDI-BF1, Blimp-1, Blimp1)
EGR1..3.p2	2.355	Egr3 (Pilot) Egr1 (NGF1-A, NGFIA, Zenk, Egr-1, Krox-1, ETR103, TIS8, Krox-24, Zif268, Zfp-6, NGFI-A, Krox24) Egr2 (Egr-2, Krox-20, Zfp-25, NGF1-B, Krox20)
ZIC1..3.p2	2.335	Zic1 (odd-paired homolog) Zic2 (odd-paired homolog, Ku, GENA 29) Zic3
HSF1,2.p2	2.313	Hsf1 (heat shock transcription factor 1) Hsf2
MZF1.p2	2.295	Mzf1 (Znf42, Mzf2, Zfp121, Zfp98)
CCCUGAG	2.236	mmu-miR-125a-5p mmu-miR-125b-5p mmu-miR-351
TCF4_dimer.p2	2.224	Tcf4 (E2.2, bHLHb19, SEF-2, TFE, ME2, ITF-2b, ASP-I2, MITF-2A, SEF2-1, E2-2, ITF-2, MITF-2B)
bHLH_family.p2	2.198	Arntl (Bmal1, MOP3, bHLHe5, Arnt3) Mitf (bHLHe32, wh, mi) Mxi1 (Mad2, bHLHc11) Tcfe3 (Tfe-3, bHLHe33, Tfe3) Clock (bHLHe8, KAT13D) Olig2 (Olg-2, Bhlhb1, bHLHe19, RK17) Mxd4 (Mad4, bHLHc12) Hey2 (Hrt2, bHLHb32, Hesr2, Herp1, CHF1) Hey1 (bHLHb31, Hesr1, hesr-1, Herp2, HRT1) Heyl (Hey3, Hrt3, bHLHb33, Hesr3) Mlxipl (bHLHd14, Wbscr14, ChREBP, WS-bHLH) Hes6 (bHLHb41) Mxd3 (bHLHc13, Mad3) Arntl2 (MOP9, bHLHe6, BMAL2) Id1 (Idb1, D2Wsu140e, bHLHb24) Mnt (Rox, bHLHd3) Olig1 (Olg-1, Bhlhb6, bHLHe21) Npas2 (bHLHe9, MOP4)
GFI1.p2	2.190	Gfi1 (Pal-1, Gfi-1, Pal1)
FOX{F1,F2,J1}.p2	2.159	Foxf2 (Fkh20, LUN, FREAC2) Foxj1 (HFH-4, Hfh4, FKHL-13) Foxf1a (HFH-8, Hfh8, Freac-1, FREAC1, Foxf1)
ATF4.p2	2.141	Atf4 (CREB2, Atf-4, C/ATF, TAXREB67)
AHR_ARNT_ARNT2.p2	2.134	Arnt (D3Ertd557e, bHLHe2, ESTM42, Hif1b) Ahr (Ahre, dioxin receptor, bHLHe76, Ahh, In, Ah) Arnt2 (bHLHe1)
MYOD1.p2	2.133	Myod1 (Myod-1, bHLHc1, MyoD, MYF3)
TGIF1.p2	2.110	Tgif1 (Tgif)
FOXA2.p3	2.085	Foxa2 (Hnf3b, HNF3beta, HNF3-beta, Tcf3b, Hnf-3b, Tcf-3b)
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	2.085	Arnt (D3Ertd557e, bHLHe2, ESTM42, Hif1b) Max (bHLHd7, bHLHd5, bHLHd8, bHLHd6, bHLHd4) Myc (Niard, Nird, bHLHe39, Myc2, c-myc) Usf1 (bHLHb11, upstream stimulatory factor) Bhlhe40 (eip1 (E47 interaction protein 1), Stra13, DEC1, Clast5, Bhlhb2, cytokine response gene 8, Stra14, CR8, Sharp2) Arnt2 (bHLHe1)
ATF2.p2	2.071	Atf2 (Creb2, ATF-2, mXBP, CRE-BP)
GGCAGUG	2.059	mmu-miR-34a mmu-miR-34b-5p mmu-miR-34c mmu-miR-449a mmu-miR-449b mmu-miR-449c
ZNF238.p2	2.058	Zfp238 (RP58)
NFE2L1.p2	2.057	Nfe2l1 (TCF-11, TCF11, NRF1, LCR-F1, Lcrf1)
GTF2I.p2	2.007	Gtf2i (TFII-I, BAP-135)
FOXD3.p2	2.001	Foxd3 (Hfh2, Genesis, CWH3)
MYFfamily.p2	1.973	Myod1 (Myod-1, bHLHc1, MyoD, MYF3) Myf6 (herculin, MRF4, bHLHc4) Myf5 (bHLHc2, Myf-5) Myog (bHLHc3, myo)
LMO2.p2	1.967	Lmo2 (Rbtn-2, Rbtn2, Rhom-2)
FOX{D1,D2}.p2	1.942	Foxd2 (Mf2) Foxd1 (FREAC4, BF-2, Hfh10, Hfhbf2)
EHF.p2	1.915	Ehf
JUN.p2	1.914	Jun (c-jun, Junc) Jund Junb
BPTF.p2	1.897	Bptf (Falz)
RXR{A,B,G}.p2	1.785	Rxra (RXR alpha 1, RXRalpha1) Rxrb (Nr2b2, H-2RIIBP, RCoR-1, Rub) Rxrg (Nr2b3)
HIC1.p2	1.783	Hic1 (HIC-1)
UAUUGCU	1.781	mmu-miR-137
NFATC1..3.p2	1.774	Nfatc3 (D8Ertd281e, NFATx, NFAT4) Nfatc2 (NFAT1-D, NFAT1, NFATp) Nfatc1 (NFATc, NFAT2, NF-ATc)
ATF5_CREB3.p2	1.770	Atf5 (Atf7, AFTA, Atfx, ODA-10) Creb3 (LZIP-1, LZIP, Luman, LZIP-2)
CUUUGGU	1.763	mmu-miR-9
HIF1A.p2	1.740	Hif1a (MOP1, bHLHe78, HIF-1alpha, HIF1alpha)
MAZ.p2	1.740	Maz (Pur-1, SAF-1, PUR1, SAF-2)
SP1.p2	1.730	Sp1 (Sp1-1)
PATZ1.p2	1.701	Patz1 (Zfp278, MAZR, POZ-AT hook-zinc finger protein)
CTCF.p2	1.691	Ctcf
NHLH1,2.p2	1.656	Nhlh1 (bHLHa35, Hen1, Tal2, Nscl) Nhlh2 (bHLHa34, NSCL2, Nscl-2, Hen2)
HAND1,2.p2	1.649	Hand1 (Thing1, Hxt, eHAND, bHLHa27, Th1, Ehand1) Hand2 (bHLHa26, Thing2, Hed, Ehand2, dHAND)
ATF6.p2	1.638	Atf6 (ESTM49, Atf6alpha)
GUAGUGU	1.625	mmu-miR-142-3p
UUGGUCC	1.614	mmu-miR-133a mmu-miR-133b
FOXL1.p2	1.606	Foxl1 (fkh6, Fkh6, FREAC7, fkh-6)
NR1H4.p2	1.603	Nr1h4 (RIP14, Rxrip14, HRR1, Fxr, FXR)
LEF1_TCF7_TCF7L1,2.p2	1.599	Tcf7 (TCF-1, T-cell factor 1, Tcf1, T cell factor-1) Tcf7l2 (mTcf-4E, Tcf4, mTcf-4B, TCF4E, Tcf-4, TCF4B) Lef1 (Lef-1, lymphoid enhancer factor 1) Tcf7l1 (Tcf3)
TBX4,5.p2	1.595	Tbx5 Tbx4
SOX17.p2	1.591	Sox17
POU2F1..3.p2	1.588	Pou2f2 (Otf-2, Oct2b, Oct2a, Oct-2, Otf2) Pou2f1 (Oct-1C, Oct-1z, Oct1, Otf1, Oct-1A, Otf-1, oct-1, Oct-1B) Pou2f3 (Skin-1a, Skn-li, Skn-1a, Skin, Oct11, Otf11, Oct-11a, Otf-11, Epoc-1)
IKZF1.p2	1.588	Ikzf1 (Ikaros, Zfpn1a1, LyF-1)
POU5F1.p2	1.586	Pou5f1 (Otf3-rs7, Oct3/4, Otf-4, Oct-3, Oct4, Otf3, Oct-3/4, Otf3g, Otf-3, Otf4, Oct-4)
ADNP_IRX_SIX_ZHX.p2	1.583	Six5 (MDMAHP, TrexBF, Dmahp) Zhx1 Irx4 Adnp Zhx3 (Tix1) Zhx2 (Raf, Afr-1, Afr1) Irx5 Six2
TFEB.p2	1.568	Tcfeb (bHLHe35, TFEB)
TLX2.p2	1.566	Tlx2 (Ncx1, Enx, Hox11L.1, Tlx1l1, NCX, Hox11l1)
AACACUG	1.564	mmu-miR-141 mmu-miR-200a
SOX{8,9,10}.p2	1.563	Sox9 Sox8 Sox10 (Sox21)
UCCAGUU	1.560	mmu-miR-145
AAUACUG	1.557	mmu-miR-200b mmu-miR-200c mmu-miR-429
HES1.p2	1.556	Hes1 (Hry, bHLHb39)
FOX{I1,J2}.p2	1.550	Foxi1 (HFH-3, Fkh10, Hfh3) Foxj2 (Fhx)
ZNF384.p2	1.550	Zfp384 (Nmp4, Ciz)
SREBF1,2.p2	1.537	Srebf1 (SREBP-1a, SREBP1, SREBP-1c, SREBP-1, bHLHd1, ADD-1, SREBP1c) Srebf2 (bHLHd2, SREBP-2, SREBP2gc, SREBP2)
GLI1..3.p2	1.522	Gli1 (Zfp-5, Zfp5) Gli2 Gli3 (Bph, brachyphalangy)
PRRX1,2.p2	1.504	Prrx2 (S8, Prx2) Prrx1 (Pmx1, Prx1, mHox, K-2)
HLF.p2	1.499	Hlf
FOSL2.p2	1.492	Fosl2 (Fra-2)
BACH2.p2	1.479	Bach2
AAAGUGC	1.476	mmu-miR-17 mmu-miR-20a mmu-miR-20b mmu-miR-93 mmu-miR-106a mmu-miR-106b
UGAAAUG	1.474	mmu-miR-203
GGAAUGU	1.474	mmu-miR-1a mmu-miR-206
GUAAACA	1.473	mmu-miR-30a mmu-miR-30b mmu-miR-30c mmu-miR-30d mmu-miR-30e mmu-miR-384-5p
SOX2.p2	1.469	Sox2 (ysb, Sox-2, lcc)
GCAGCAU	1.462	mmu-miR-103 mmu-miR-107
ACAUUCA	1.461	mmu-miR-181a mmu-miR-181b mmu-miR-181c mmu-miR-181d
CRX.p2	1.455	Crx (Crx1)
CAGCAGG	1.454	mmu-miR-214 mmu-miR-761
POU1F1.p2	1.451	Pou1f1 (Pit1-rs1, Hmp1, GHF-1, Pit1, Pit-1)
GGAAGAC	1.430	mmu-miR-7a mmu-miR-7b
HMGA1,2.p2	1.428	Hmga1 (Hmga1b, Hmgi, HMGI(Y), Hmga1a, HMG-I(Y), HMGY, Hmgiy) Hmga2 (HMGI-C, Hmgic)
EVI1.p2	1.425	Mecom (MDS1-EVI1, Prdm3, Jbo, Mds1, ZNFPR1B1, Evi-1, Evi1)
DBP.p2	1.405	Dbp
STAT2,4,6.p2	1.403	Stat2 Stat4 Stat6
SOX5.p2	1.402	Sox5
AGCAGCA	1.390	mmu-miR-15a mmu-miR-15b mmu-miR-16 mmu-miR-195 mmu-miR-322 mmu-miR-497 mmu-miR-1907
CEBPA,B_DDIT3.p2	1.384	Ddit3 (CHOP-10, C/EBP homoologous protein 10, chop, gadd153, CHOP10) Cebpa (C/ebpalpha, Cebp, C/EBP alpha) Cebpb (CRP2, C/EBPbeta, Nfil6, LAP, C/EBP BETA, LIP, NF-M, IL-6DBP, NF-IL6)
GGCUCAG	1.383	mmu-miR-24
RREB1.p2	1.383	Rreb1
CCAGUGU	1.381	mmu-miR-199a-5p
HOX{A4,D4}.p2	1.367	Hoxa4 (Hox-1.4) Hoxd4 (Hox-4.2, Hox-5.1)
TFAP2B.p2	1.363	Tcfap2b (AP-2(beta))
NR6A1.p2	1.361	Nr6a1 (NCNF, Gcnf)
AUGGCUU	1.359	mmu-miR-135a mmu-miR-135b
EWSR1-FLI1.p2	1.359	Fli1 (EWSR2, Sic1, SIC-1, Fli-1) Ewsr1 (Ews)
STAT1,3.p3	1.357	Stat1 Stat3 (Aprf)
CDX1,2,4.p2	1.341	Cdx1 (Cdx, Cdx-1) Cdx2 (Cdx-2) Cdx4 (Cdx-3, Cdx-4, Cdx3)
AIRE.p2	1.340	Aire
GTF2A1,2.p2	1.335	Gtf2a1 (37kDa, 19kDa, TfIIAa/b) Gtf2a2 (TfIIg, 12kDa)
GUGCAAA	1.334	mmu-miR-19a mmu-miR-19b
GCUGGUG	1.329	mmu-miR-138
POU5F1_SOX2{dimer}.p2	1.328	Pou5f1 (Otf3-rs7, Oct3/4, Otf-4, Oct-3, Oct4, Otf3, Oct-3/4, Otf3g, Otf-3, Otf4, Oct-4) Sox2 (ysb, Sox-2, lcc)
PAX2.p2	1.322	Pax2 (Pax-2, Opdc)
ESR1.p2	1.311	Esr1 (ER-alpha, ERalpha, ESR, ER[a], Nr3a1, ERa, Estra, Estr)
GFI1B.p2	1.303	Gfi1b (Gfi-1B)
NFE2.p2	1.302	Nfe2 (p45nf-e2, p45NFE2, p45, NF-E2)
HMX1.p2	1.296	Hmx1 (Nkx5-3)
AAGUGCU	1.294	mmu-miR-291a-3p mmu-miR-294 mmu-miR-295 mmu-miR-302a mmu-miR-302b mmu-miR-302d
AUGGCAC	1.291	mmu-miR-183
NFE2L2.p2	1.290	Nfe2l2 (Nrf2)
GAGGUAG	1.288	mmu-let-7a mmu-let-7b mmu-let-7c mmu-let-7d mmu-let-7e mmu-let-7f mmu-let-7g mmu-let-7i mmu-miR-98 mmu-miR-1961
UUUUUGC	1.285	mmu-miR-129-5p
EN1,2.p2	1.285	En1 (engrailed-1, Mo-en.1, En-1) En2 (En-2)
SPZ1.p2	1.285	Spz1
ZNF423.p2	1.284	Zfp423 (ataxia1, Ebfaz, Zfp104, Roaz)
PBX1.p2	1.273	Pbx1 (Pbx-1)
FOX{C1,C2}.p2	1.272	Foxc1 (Mf1, frkhda, fkh-1, Mf4, FREAC3, fkh1, Fkh1) Foxc2 (Hfhbf3, Fkh14, MFH-1, Mfh1)
NKX6-1,2.p2	1.270	Nkx6-1 (NKX6A, Nkx6.1) Nkx6-2 (Nkx6.2, Gtx)
ZNF148.p2	1.267	Zfp148 (beta enolase repressor factor 1, ZBP-89, BFCOL1, BERF-1)
EBF1.p2	1.251	Ebf1 (Olf-1, Olf1, O/E-1)
CREB1.p2	1.247	Creb1 (Creb-1, Creb)
UGCAUAG	1.240	mmu-miR-153
PAX4.p2	1.229	Pax4 (Pax-4)
ZBTB16.p2	1.221	Zbtb16 (Zfp145, PLZF, Green's luxoid)
NKX3-2.p2	1.217	Nkx3-2 (Nkx-3.2, Bapx1)
TFAP4.p2	1.186	Tcfap4 (bHLHc41, Tfap4, AP-4)
FOXQ1.p2	1.173	Foxq1 (Hfh1l, HFH-1, Hfh1, sa)
SMAD1..7,9.p2	1.171	Smad5 (MusMLP, Madh5, Smad 5) Smad1 (Smad 1, Madh1, Madr1) Smad3 (Smad 3, Madh3) Smad4 (Smad 4, DPC4, Dpc4, Madh4, D18Wsu70e) Smad2 (Smad 2, Madh2, Madr2) Smad6 (Smad 6, Madh6) Smad7 (Madh7) Smad9 (SMAD8A, SMAD8B, Madh9, MADH6)
ONECUT1,2.p2	1.151	Onecut2 (OC-2, Oc2) Onecut1 (OC-1, HNF6, Hfh12, Hnf6, Oc1, D9Ertd423e)
NR3C1.p2	1.146	Nr3c1 (glucocorticoid receptor, GR, Grl1, Grl-1)
MYBL2.p2	1.142	Mybl2 (Bmyb, B-Myb)
IKZF2.p2	1.140	Ikzf2 (Zfpn1a2, Helios)
POU3F1..4.p2	1.140	Pou3f1 (Tst-1, Test1, Scip, Oct6, Oct-6, Tst1, Otf6) Pou3f3 (Brn1, Brn-1, Otf8) Pou3f2 (Otf7, Brn2, Brn-2) Pou3f4 (BRN-4, Otf9, Brn4)
NKX2-2,8.p2	1.126	Nkx2-2 (Nkx2.2, tinman, Nkx-2.2) Nkx2-9 (tinman, Nkx-2.9, Nkx2.9)
PAX5.p2	1.124	Pax5 (Pax-5, EBB-1)
NFIL3.p2	1.122	Nfil3 (E4BP4)
AGCUUAU	1.120	mmu-miR-21 mmu-miR-590-5p
GUCAGUU	1.118	mmu-miR-223
NANOG{mouse}.p2	1.104	Nanog (ecat4, ENK)
EOMES.p2	1.104	Eomes (Tbr2)
ALX1.p2	1.087	Alx1 (Cart1)
EP300.p2	1.066	Ep300 (KAT3B, p300)
HOX{A5,B5}.p2	1.064	Hoxb5 (Hox-2.1) Hoxa5 (Hox-1.3)
LHX3,4.p2	1.060	Lhx3 (P-LIM, mLim-3, Lim3) Lhx4 (Gsh4, Gsh-4)
HOXA9_MEIS1.p2	1.048	Meis1 Hoxa9 (Hox-1.7, D6a9)
RXRA_VDR{dimer}.p2	1.042	Vdr (Nr1i1)
FOXN1.p2	1.035	Foxn1 (Hfh11, D11Bhm185e, whn)
UCACAUU	1.033	mmu-miR-23a mmu-miR-23b
FOXO1,3,4.p2	1.029	Foxo1 (FKHR, Foxo1a, Fkhr1, Afxh) Foxo4 (Mllt7, Foxo4, afx, Afxh) Foxo3 (FKHRL1, Foxo3a, Fkhr2)
NKX3-1.p2	1.013	Nkx3-1 (Nkx-3.1, bagpipe, NKX3.1, NKX3A, Bax)
NFIX.p2	1.008	Nfix
FOXP3.p2	1.001	Foxp3 (scurfin, JM2)
GCUACAU	0.993	mmu-miR-221 mmu-miR-222 mmu-miR-1928
NKX2-1,4.p2	0.993	Nkx2-1 (T/EBP, thyroid transcription factor-1, Titf1, thyroid-specific enhancer-binding protein, tinman, Ttf-1) Nkx2-4 (Nkx-2.4, tinman)
UUGGCAC	0.988	mmu-miR-96
CDC5L.p2	0.982	Cdc5l (PCDC5RP)
AGCUGCC	0.972	mmu-miR-22
AGUGGUU	0.956	mmu-miR-140 mmu-miR-876-3p
NANOG.p2	0.953	Nanog (ecat4, ENK)
SRY.p2	0.923	Sry (Tdf, Tdy)
AGUGCAA	0.908	mmu-miR-130a mmu-miR-130b mmu-miR-301a mmu-miR-301b mmu-miR-721
CUCCCAA	0.908	mmu-miR-150 mmu-miR-5127
RORA.p2	0.899	Rora (Nr1f1, tmgc26)
AGCAGCG	0.887	mmu-miR-503
UCAAGUA	0.883	mmu-miR-26a mmu-miR-26b
RBPJ.p2	0.875	Rbpj (RBPjk, RBP-J kappa, Rbpsuh, Igkjrb, CBF1, Igkrsbp)
NKX2-3_NKX2-5.p2	0.871	Nkx2-5 (Nkx-2.5, Nkx2.5, Csx, tinman) Nkx2-3 (Nkx-2.3, tinman, Nkx2.3)
CAGUGCA	0.865	mmu-miR-148a mmu-miR-148b mmu-miR-152
UCCCUUU	0.862	mmu-miR-204 mmu-miR-211
STAT5{A,B}.p2	0.852	Stat5b Stat5a (STAT5)
AACAGUC	0.848	mmu-miR-132 mmu-miR-212-3p
CCUUCAU	0.846	mmu-miR-205
AUUGCAC	0.841	mmu-miR-25 mmu-miR-32 mmu-miR-92a mmu-miR-92b mmu-miR-363-3p mmu-miR-367
GUAACAG	0.840	mmu-miR-194
AR.p2	0.813	Ar
UUGUUCG	0.807	mmu-miR-375
RXRG_dimer.p3	0.806	Nr1h2 (LXRbeta, RIP15, Unr2, LXRB) Rxra (RXR alpha 1, RXRalpha1) Pparg (Ppar-gamma2, PPAR-gamma, PPARgamma, PPARgamma2, Nr1c3) Ppara (PPAR-alpha, PPARalpha, Nr1c1, Ppar) Rxrb (Nr2b2, H-2RIIBP, RCoR-1, Rub) Rxrg (Nr2b3)
CCAGCAU	0.793	mmu-miR-338-3p
T.p2	0.789	T (T1, Bra)
UUGGCAA	0.782	mmu-miR-182
AAGGUGC	0.776	mmu-miR-18a mmu-miR-18b
GAUCAGA	0.776	mmu-miR-383
CUX2.p2	0.775	Cux2 (ENSMUSG00000072641, Cux-2, Cutl2, Cux2)
TAL1_TCF{3,4,12}.p2	0.774	Tcf3 (ALF2, E12, bHLHb21, Tcfe2a, A1, E47, Pan1, E2A, Pan2) Tcf4 (E2.2, bHLHb19, SEF-2, TFE, ME2, ITF-2b, ASP-I2, MITF-2A, SEF2-1, E2-2, ITF-2, MITF-2B) Tal1 (bHLHa17, Scl, SCL/tal-1) Tcf12 (HTF4, bHLHb20, HEB, HTF-4, REB, ALF1, HEBAlt, ME1)
UGCAUUG	0.772	mmu-miR-33
ACAGUAC	0.768	mmu-miR-101a mmu-miR-101b
GGCAAGA	0.724	mmu-miR-31
GAUUGUC	0.718	mmu-miR-219-5p
AAUGCCC	0.716	mmu-miR-365
PAX6.p2	0.711	Pax6 (Pax-6, Dickie's small eye, AEY11, Dey, Gsfaey11)
UAAGACG	0.707	mmu-miR-208a-3p mmu-miR-208b
ARID5B.p2	0.707	Arid5b (Mrf2, Mrf2alpha, Desrt, Mrf2beta)
UAAGACU	0.678	mmu-miR-499
TP53.p2	0.678	Trp53 (p44, p53)
GZF1.p2	0.662	Gzf1 (Zfp336)
CACAGUG	0.657	mmu-miR-128
UAAUGCU	0.621	mmu-miR-155
AGGUAGU	0.610	mmu-miR-196a mmu-miR-196b
POU6F1.p2	0.604	Pou6f1 (Emb, cns-1)
ACAGUAU	0.604	mmu-miR-144
ACUGGCC	0.596	mmu-miR-193 mmu-miR-193b
ACCCUGU	0.581	mmu-miR-10a mmu-miR-10b
UCACAGU	0.566	mmu-miR-27a mmu-miR-27b
ACUGCAU	0.560	mmu-miR-217
AUGACAC	0.553	mmu-miR-425 mmu-miR-489
GAGAACU	0.537	mmu-miR-146a mmu-miR-146b
CUACAGU	0.521	mmu-miR-139-5p
PPARG.p2	0.507	Pparg (Ppar-gamma2, PPAR-gamma, PPARgamma, PPARgamma2, Nr1c3)
MSX1,2.p2	0.489	Msx1 (msh, Hox7.1, Hox7, muscle-segment homeobox, Hox-7) Msx2 (Hox-8, Hox8, Hox8.1)
VSX1,2.p2	0.479	Vsx2 (Hox10, Chx10, Hox-10) Vsx1 (CHX10-like)
GAGAUGA	0.475	mmu-miR-143
AAUCUCU	0.423	mmu-miR-216b
PDX1.p2	0.397	Pdx1 (Ipf1, IPF-1, pdx-1, STF-1, Mody4, IDX-1)
GGACGGA	0.340	mmu-miR-184
AACGGAA	0.335	mmu-miR-191
GGAGUGU	0.321	mmu-miR-122
CGUGUCU	0.320	mmu-miR-187
AAUCUCA	0.303	mmu-miR-216a
AACCUGG	0.260	mmu-miR-490-3p
GAUAUGU	0.258	mmu-miR-190 mmu-miR-190b
CGUACCG	0.239	mmu-miR-126-3p
UGACCUA	0.224	mmu-miR-192 mmu-miR-215
UGUGCGU	0.206	mmu-miR-210
PAX3,7.p2	0.125	Pax7 (Pax-7) Pax3 (Pax-3)
PAX8.p2	0.125	Pax8 (Pax-8)
AACCGUU	0.074	mmu-miR-451
ACCCGUA	0.017	mmu-miR-99a mmu-miR-99b mmu-miR-100