avrg: Epithelial-Mesenchymal Transition, human (Scheel, 2011)
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
Sample | Condition |
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01_GSM710379_01_HMLE-24hi_a | Epithelial |
02_GSM710383_05_HMLE-24hi_b | Epithelial |
03_GSM710380_02_HMLE-msp1_a | Mesenchymal |
04_GSM710381_03_HMLE-msp2_a | Mesenchymal |
05_GSM710382_04_HMLE-msp3_a | Mesenchymal |
06_GSM710384_06_HMLE-msp1_b | Mesenchymal |
07_GSM710385_07_HMLE-msp2_b | Mesenchymal |
08_GSM710386_08_HMLE-msp3_b | Mesenchymal |
Motif name | Z-value | Associated genes | Profile | Logo |
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ZEB1 | 18.32 |
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ID4_TCF4_SNAI2 | 6.39 |
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TWIST1_SNAI1 | 4.83 |
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MXI1_MYC_MYCN | 4.13 |
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NRF1 | 3.98 |
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KLF1 | 3.88 |
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FOSL1 | 3.82 |
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TAF1 | 3.75 |
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EPAS1_BCL3 | 3.61 |
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NR1I2 | 3.39 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.