ISMARA results: GNF_1

Sample name: GNF_1_Appendix

Sorted Z-values histogram for the sample GNF_1_Appendix

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
UUUUUGC	8.776
CUCCCAA	7.274
SRF.p3	4.784	SRF
POU2F1..3.p2	4.363	POU2F2 POU2F1 POU2F3
MYFfamily.p2	3.903	MYOD1 MYF6 MYF5 MYOG
TLX1..3_NFIC{dimer}.p2	3.710	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
GATA6.p2	3.403	GATA6
SMAD1..7,9.p2	3.355	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
UGAAAUG	3.326
RREB1.p2	3.315	RREB1
NR1H4.p2	3.263	NR1H4
STAT1,3.p3	3.177	STAT1 STAT3
NFKB1_REL_RELA.p2	3.158	RELA REL NFKB1
MTF1.p2	3.140	MTF1
KLF12.p2	2.950	KLF12
GTF2I.p2	2.942	GTF2I
FOX{D1,D2}.p2	2.931	FOXD2 FOXD1
TEAD1.p2	2.931	TEAD1 TEAD2 TEAD3 TEAD4
POU1F1.p2	2.839	POU1F1
MYOD1.p2	2.832	MYOD1
EVI1.p2	2.807	EVI1
UCCCUUU	2.692
JUN.p2	2.586	JUN JUND JUNB
ZIC1..3.p2	2.571	ZIC1 ZIC2 ZIC3
GTF2A1,2.p2	2.508	GTF2A1 GTF2A2
GAGGUAG	2.487
ZNF238.p2	2.479	ZNF238
GATA1..3.p2	2.404	GATA1 GATA2 GATA3
FEV.p2	2.356	FEV
TBX4,5.p2	2.346	TBX5 TBX4
TGIF1.p2	2.278	TGIF1
NANOG{mouse}.p2	2.259	NANOG
AGCACCA	2.253
MEF2{A,B,C,D}.p2	2.252	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
ZNF384.p2	2.206	ZNF384
RBPJ.p2	2.184	RBPJ
GUAAACA	2.147
NFATC1..3.p2	2.141	NFATC3 NFATC2 NFATC1
LEF1_TCF7_TCF7L1,2.p2	2.137	TCF7 TCF7L2 LEF1 TCF7L1
POU5F1.p2	2.094	POU5F1
EN1,2.p2	2.064	EN1 EN2
HBP1_HMGB_SSRP1_UBTF.p2	2.026	HMGB2 HMGB3 SSRP1 UBTF HBP1
FOXA2.p3	2.011	FOXA2
AAAGUGC	1.968
EBF1.p2	1.967	EBF1
MAZ.p2	1.955	MAZ
CACAGUG	1.953
GGCUCAG	1.944
HAND1,2.p2	1.920	HAND1 HAND2
UGUGCUU	1.898
POU5F1_SOX2{dimer}.p2	1.768	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
FOX{C1,C2}.p2	1.767	FOXC1 FOXC2
TFCP2.p2	1.762	TFCP2
REST.p3	1.761	REST
UUGUUCG	1.707
TBP.p2	1.691	TBP
NR6A1.p2	1.681	NR6A1
TCF4_dimer.p2	1.594	TCF4
ZEB1.p2	1.580	ZEB1
HNF1A.p2	1.567	HNF1A
NHLH1,2.p2	1.534	NHLH1 NHLH2
FOXP3.p2	1.495	FOXP3
SRY.p2	1.465	SRY
HIC1.p2	1.462	HIC1
SNAI1..3.p2	1.443	SNAI2 SNAI1 SNAI3
ETS1,2.p2	1.439	ETS2 ETS1
NR3C1.p2	1.415	NR3C1
RUNX1..3.p2	1.402	RUNX1 RUNX3 RUNX2
FOSL2.p2	1.378	FOSL2
AAGUGCU	1.362
ALX1.p2	1.355	ALX1
ATF6.p2	1.333	ATF6
UGCAUAG	1.273
GAUCAGA	1.259
CDC5L.p2	1.229	CDC5L
GGCAGUG	1.225
TFEB.p2	1.218	TFEB
CCCUGAG	1.192
HMX1.p2	1.180	HMX1
AIRE.p2	1.174	AIRE
NKX2-1,4.p2	1.173	NKX2-1 NKX2-4
CCAGCAU	1.170
AGCUGCC	1.167
GAGAACU	1.153
PPARG.p2	1.135	PPARG
NKX2-3_NKX2-5.p2	1.134	NKX2-5 NKX2-3
TLX2.p2	1.082	TLX2
STAT2,4,6.p2	1.023	STAT2 STAT4 STAT6
UAAGACU	0.993
MYBL2.p2	0.985	MYBL2
GAGAUGA	0.979
PAX6.p2	0.969	PAX6
RXR{A,B,G}.p2	0.944	RXRA RXRB RXRG
AR.p2	0.940	AR
AHR_ARNT_ARNT2.p2	0.910	ARNT AHR ARNT2
AGCAGCA	0.829
DBP.p2	0.827	DBP
TAL1_TCF{3,4,12}.p2	0.821	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
RFX1..5_RFXANK_RFXAP.p2	0.819	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
CGUGUCU	0.811
POU3F1..4.p2	0.768	POU3F1 POU3F3 POU3F2 POU3F4
EGR1..3.p2	0.746	EGR3 EGR1 EGR2
TFAP4.p2	0.730	TFAP4
PAX2.p2	0.721	PAX2
CCAGUGU	0.706
AAUACUG	0.705
PITX1..3.p2	0.704	PITX2 PITX3 PITX1
POU6F1.p2	0.696	POU6F1
TFAP2{A,C}.p2	0.686	TFAP2C TFAP2A
ZNF423.p2	0.676	ZNF423
AUGGCUU	0.663
RXRA_VDR{dimer}.p2	0.651	VDR	$logo of RXRA_VDR{dimer}.p2$
MZF1.p2	0.649	MZF1
NFIX.p2	0.642	NFIX
HLF.p2	0.630	HLF
ACCCUGU	0.630
MSX1,2.p2	0.617	MSX1 MSX2
ADNP_IRX_SIX_ZHX.p2	0.591	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
AACACUG	0.585
CUUUGGU	0.544
AAUCUCU	0.541
NFIL3.p2	0.538	NFIL3
ACAUUCA	0.525
UAUUGCU	0.493
CUACAGU	0.488
ONECUT1,2.p2	0.475	ONECUT2 ONECUT1
CCUUCAU	0.470
AAUGCCC	0.439
UAAUGCU	0.433
GGCAAGA	0.419
CGUACCG	0.392
IKZF2.p2	0.380	IKZF2
AGCUUAU	0.366
UUGGCAA	0.343
PAX8.p2	0.340	PAX8
EOMES.p2	0.339	EOMES
FOXL1.p2	0.328	FOXL1
PDX1.p2	0.289	PDX1
STAT5{A,B}.p2	0.283	STAT5B STAT5A
AUGUGCC	0.278
RORA.p2	0.273	RORA
AACGGAA	0.264
VSX1,2.p2	0.261	VSX2 VSX1
GGAAGAC	0.261
AACCUGG	0.247
CAGCAGG	0.240
NANOG.p2	0.238	NANOG
AUGACAC	0.235
NFE2L1.p2	0.224	NFE2L1
IRF1,2,7.p3	0.216	IRF1 IRF2 IRF7
ACUGCAU	0.201
HMGA1,2.p2	0.182	HMGA1 HMGA2
UGUGCGU	0.160
FOS_FOS{B,L1}_JUN{B,D}.p2	0.157	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
NKX6-1,2.p2	0.146	NKX6-1 NKX6-2
UCACAGU	0.143
AGGUAGU	0.112
AAUCUCA	0.108
CDX1,2,4.p2	0.106	CDX1 CDX2 CDX4
PRDM1.p3	0.089	PRDM1
SPZ1.p2	0.071	SPZ1
PAX3,7.p2	0.064	PAX7 PAX3
FOX{I1,J2}.p2	0.059	FOXI1 FOXJ2
FOX{F1,F2,J1}.p2	0.039	FOXF2 FOXJ1 FOXF1
GAUUGUC	0.032
PRRX1,2.p2	0.009	PRRX2 PRRX1
UGCAUUG	-0.011
PAX4.p2	-0.017	PAX4
GAUAUGU	-0.034
LHX3,4.p2	-0.040	LHX3 LHX4
AAGGCAC	-0.049
ACCCGUA	-0.056
EP300.p2	-0.061	EP300
ACAGUAC	-0.070
CRX.p2	-0.074	CRX
FOXQ1.p2	-0.076	FOXQ1
AGUGCAA	-0.086
FOXO1,3,4.p2	-0.090	FOXO1 FOXO4 FOXO3
NR4A2.p2	-0.091	NR4A2
HOXA9_MEIS1.p2	-0.102	MEIS1 HOXA9
HOX{A4,D4}.p2	-0.133	HOXA4 HOXD4
GCUGGUG	-0.167
AUUGCAC	-0.177
AACAGUC	-0.218
AGCAGCG	-0.235
UGACCUA	-0.247
ACUGGCC	-0.262
T.p2	-0.276	T
SREBF1,2.p2	-0.294	SREBF1 SREBF2
UUGGCAC	-0.300
GGACGGA	-0.304
CREB1.p2	-0.306	CREB1
HSF1,2.p2	-0.319	HSF1 HSF2
UUGGUCC	-0.336
CUX2.p2	-0.347	CUX2
ACAGUAU	-0.359
IKZF1.p2	-0.401	IKZF1
NKX3-1.p2	-0.408	NKX3-1
ESR1.p2	-0.453	ESR1
GFI1B.p2	-0.460	GFI1B
GCAGCAU	-0.466
GUCAGUU	-0.466
SOX17.p2	-0.494	SOX17
GZF1.p2	-0.507	GZF1
UAAGACG	-0.532
AACCGUU	-0.542
SOX5.p2	-0.545	SOX5
AAGGUGC	-0.586
GCUACAU	-0.594
ATF2.p2	-0.599	ATF2
NKX3-2.p2	-0.600	NKX3-2
HOX{A5,B5}.p2	-0.639	HOXB5 HOXA5
HNF4A_NR2F1,2.p2	-0.683	NR2F1 NR2F2 HNF4A
CAGUGCA	-0.686
CEBPA,B_DDIT3.p2	-0.690	DDIT3 CEBPA CEBPB
HOX{A6,A7,B6,B7}.p2	-0.705	HOXB6 HOXA7 HOXB7 HOXA6
NFE2.p2	-0.719	NFE2
SOX{8,9,10}.p2	-0.852	SOX9 SOX8 SOX10
UCCAGUU	-0.860
GGAGUGU	-0.884
ARID5B.p2	-0.892	ARID5B
ZBTB6.p2	-0.914	ZBTB6
GUAACAG	-0.915
ZNF148.p2	-0.922	ZNF148
GLI1..3.p2	-1.019	GLI1 GLI2 GLI3
PAX5.p2	-1.043	PAX5
GUAGUGU	-1.046
AGUGGUU	-1.074
GFI1.p2	-1.099	GFI1
EWSR1-FLI1.p2	-1.115	FLI1 EWSR1
SPI1.p2	-1.185	SPI1
UCAAGUA	-1.191
RXRG_dimer.p3	-1.199	NR1H2 RXRA PPARG PPARA RXRB RXRG
AUGGCAC	-1.245
ZBTB16.p2	-1.263	ZBTB16
GUGCAAA	-1.371
KLF4.p3	-1.461	KLF4
PBX1.p2	-1.506	PBX1
ZFP161.p2	-1.529	ZFP161
CTCF.p2	-1.571	CTCF
PATZ1.p2	-1.608	PATZ1
NR5A1,2.p2	-1.796	NR5A1 NR5A2
DMAP1_NCOR{1,2}_SMARC.p2	-1.864	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
SPIB.p2	-2.029	SPIB
FOXD3.p2	-2.055	FOXD3
UCACAUU	-2.119
NKX2-2,8.p2	-2.354	NKX2-2 NKX2-8
FOXN1.p2	-2.408	FOXN1
TFAP2B.p2	-2.473	TFAP2B
ATF4.p2	-2.628	ATF4
BACH2.p2	-2.633	BACH2
SOX2.p2	-2.684	SOX2
LMO2.p2	-2.712	LMO2
NFE2L2.p2	-2.718	NFE2L2
TP53.p2	-2.913	TP53
HES1.p2	-3.058	HES1
BPTF.p2	-3.261	BPTF
MAFB.p2	-3.264	MAFB
bHLH_family.p2	-3.271	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
TFDP1.p2	-3.465	TFDP1
SP1.p2	-3.525	SP1
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-3.653	ARNT MAX MYC USF1 BHLHB2 ARNT2
EHF.p2	-4.089	EHF
E2F1..5.p2	-4.095	E2F4 E2F5 E2F2 E2F1 E2F3
HIF1A.p2	-4.306	HIF1A
ATF5_CREB3.p2	-5.044	ATF5 CREB3
XBP1.p3	-5.248	XBP1
ESRRA.p2	-5.290	ESRRA
GGAAUGU	-5.390
ELF1,2,4.p2	-5.852	ELF2 ELF1 ELF4
MYB.p2	-6.281	MYB
ZNF143.p2	-7.400	ZNF143
ELK1,4_GABP{A,B1}.p3	-8.219	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
NFY{A,B,C}.p2	-8.605	NFYC NFYB NFYA
YY1.p2	-10.701	YY1
NRF1.p2	-11.830	NRF1

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Sample name: GNF_1_Appendix

Sorted z-values for every WM.