ISMARA results: GNF_1

Sample name: GNF_1_DRG

Sorted Z-values histogram for the sample GNF_1_DRG

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
UUUUUGC	9.409
CUCCCAA	8.358
TLX1..3_NFIC{dimer}.p2	5.161	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
KLF12.p2	3.882	KLF12
UCCCUUU	3.471
RREB1.p2	3.417	RREB1
EVI1.p2	3.283	EVI1
HIC1.p2	3.219	HIC1
TEAD1.p2	3.079	TEAD1 TEAD2 TEAD3 TEAD4
TBP.p2	2.992	TBP
TFCP2.p2	2.919	TFCP2
SMAD1..7,9.p2	2.911	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
TLX2.p2	2.819	TLX2
MZF1.p2	2.814	MZF1
JUN.p2	2.726	JUN JUND JUNB
EN1,2.p2	2.656	EN1 EN2
TGIF1.p2	2.629	TGIF1
GTF2A1,2.p2	2.539	GTF2A1 GTF2A2
EBF1.p2	2.515	EBF1
POU1F1.p2	2.495	POU1F1
NANOG{mouse}.p2	2.415	NANOG
MTF1.p2	2.399	MTF1
GATA1..3.p2	2.385	GATA1 GATA2 GATA3
SNAI1..3.p2	2.329	SNAI2 SNAI1 SNAI3
UGUGCUU	2.171
UGCAUAG	2.151
NKX2-3_NKX2-5.p2	2.132	NKX2-5 NKX2-3
SRY.p2	2.066	SRY
MYFfamily.p2	2.058	MYOD1 MYF6 MYF5 MYOG
NFATC1..3.p2	2.058	NFATC3 NFATC2 NFATC1
REST.p3	1.973	REST
FOXP3.p2	1.968	FOXP3
GGCUCAG	1.929
AGCACCA	1.922
STAT1,3.p3	1.912	STAT1 STAT3
LEF1_TCF7_TCF7L1,2.p2	1.879	TCF7 TCF7L2 LEF1 TCF7L1
AAUACUG	1.852
NHLH1,2.p2	1.847	NHLH1 NHLH2
PRRX1,2.p2	1.836	PRRX2 PRRX1
MYBL2.p2	1.811	MYBL2
GAGAUGA	1.798
ZIC1..3.p2	1.786	ZIC1 ZIC2 ZIC3
FOX{D1,D2}.p2	1.786	FOXD2 FOXD1
HMX1.p2	1.735	HMX1
PAX6.p2	1.719	PAX6
MYOD1.p2	1.685	MYOD1
NFIX.p2	1.676	NFIX
UGAAAUG	1.656
GGCAGUG	1.637
ALX1.p2	1.637	ALX1
TCF4_dimer.p2	1.563	TCF4
AAUCUCU	1.554
TAL1_TCF{3,4,12}.p2	1.548	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
GAGGUAG	1.542
GTF2I.p2	1.542	GTF2I
GATA6.p2	1.536	GATA6
ETS1,2.p2	1.523	ETS2 ETS1
POU5F1.p2	1.508	POU5F1
ZNF384.p2	1.478	ZNF384
TBX4,5.p2	1.464	TBX5 TBX4
AGUGCAA	1.445
RFX1..5_RFXANK_RFXAP.p2	1.435	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
LHX3,4.p2	1.366	LHX3 LHX4
GAGAACU	1.362
AACACUG	1.313
AAAGUGC	1.281
UUGUUCG	1.275
RXR{A,B,G}.p2	1.274	RXRA RXRB RXRG
NR1H4.p2	1.273	NR1H4
GUCAGUU	1.255
HBP1_HMGB_SSRP1_UBTF.p2	1.236	HMGB2 HMGB3 SSRP1 UBTF HBP1
SPZ1.p2	1.224	SPZ1
CUUUGGU	1.198
GAUCAGA	1.192
ZNF238.p2	1.164	ZNF238
MSX1,2.p2	1.158	MSX1 MSX2
HNF4A_NR2F1,2.p2	1.150	NR2F1 NR2F2 HNF4A
CUACAGU	1.141
PAX2.p2	1.123	PAX2
HAND1,2.p2	1.112	HAND1 HAND2
CGUGUCU	1.108
CACAGUG	1.091
FOX{I1,J2}.p2	1.078	FOXI1 FOXJ2
HSF1,2.p2	1.029	HSF1 HSF2
HNF1A.p2	1.022	HNF1A
AGCUGCC	1.020
FOXO1,3,4.p2	1.002	FOXO1 FOXO4 FOXO3
FOXA2.p3	0.987	FOXA2
HOX{A5,B5}.p2	0.961	HOXB5 HOXA5
AUGGCUU	0.938
FEV.p2	0.901	FEV
POU5F1_SOX2{dimer}.p2	0.895	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
UAAGACU	0.894
AUGACAC	0.835
NFIL3.p2	0.791	NFIL3
STAT2,4,6.p2	0.789	STAT2 STAT4 STAT6
CCAGCAU	0.782
POU2F1..3.p2	0.715	POU2F2 POU2F1 POU2F3
FOXL1.p2	0.706	FOXL1
DMAP1_NCOR{1,2}_SMARC.p2	0.706	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
STAT5{A,B}.p2	0.693	STAT5B STAT5A
AIRE.p2	0.684	AIRE
AGCUUAU	0.664
GFI1.p2	0.664	GFI1
SRF.p3	0.652	SRF
ATF2.p2	0.651	ATF2
NKX2-1,4.p2	0.620	NKX2-1 NKX2-4
CAGCAGG	0.620
HLF.p2	0.618	HLF
PAX8.p2	0.611	PAX8
NR6A1.p2	0.585	NR6A1
SREBF1,2.p2	0.563	SREBF1 SREBF2
AAGGCAC	0.560
NFE2.p2	0.559	NFE2
GLI1..3.p2	0.537	GLI1 GLI2 GLI3
ZEB1.p2	0.515	ZEB1
NR3C1.p2	0.505	NR3C1
AAGUGCU	0.434
PDX1.p2	0.431	PDX1
HMGA1,2.p2	0.424	HMGA1 HMGA2
ACCCUGU	0.401
RXRA_VDR{dimer}.p2	0.389	VDR	$logo of RXRA_VDR{dimer}.p2$
AGGUAGU	0.372
GUAAACA	0.372
AACCUGG	0.358
ACUGCAU	0.346
PPARG.p2	0.334	PPARG
ADNP_IRX_SIX_ZHX.p2	0.334	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
UUGGUCC	0.327
IRF1,2,7.p3	0.281	IRF1 IRF2 IRF7
FOS_FOS{B,L1}_JUN{B,D}.p2	0.276	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
UCACAGU	0.268
ZBTB16.p2	0.267	ZBTB16
IKZF2.p2	0.261	IKZF2
AHR_ARNT_ARNT2.p2	0.244	ARNT AHR ARNT2
MEF2{A,B,C,D}.p2	0.213	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
UGUGCGU	0.206
TFAP4.p2	0.200	TFAP4
CDC5L.p2	0.199	CDC5L
UAAUGCU	0.194
EWSR1-FLI1.p2	0.189	FLI1 EWSR1
POU3F1..4.p2	0.186	POU3F1 POU3F3 POU3F2 POU3F4
HOXA9_MEIS1.p2	0.168	MEIS1 HOXA9
RORA.p2	0.166	RORA
ACUGGCC	0.163
CAGUGCA	0.155
ATF6.p2	0.119	ATF6
AGCAGCA	0.118
CCUUCAU	0.076
AAUCUCA	0.073
MAZ.p2	0.068	MAZ
CCAGUGU	0.065
DBP.p2	0.058	DBP
NANOG.p2	0.057	NANOG
GCAGCAU	0.042
CCCUGAG	0.040
T.p2	0.032	T
AAUGCCC	0.014
POU6F1.p2	0.008	POU6F1
NFKB1_REL_RELA.p2	-0.003	RELA REL NFKB1
ONECUT1,2.p2	-0.006	ONECUT2 ONECUT1
PAX3,7.p2	-0.008	PAX7 PAX3
AUUGCAC	-0.010
UGACCUA	-0.018
ACCCGUA	-0.024
UAAGACG	-0.042
ACAGUAU	-0.042
UUGGCAC	-0.060
RUNX1..3.p2	-0.069	RUNX1 RUNX3 RUNX2
GGCAAGA	-0.069
ESR1.p2	-0.079	ESR1
ACAUUCA	-0.105
GAUAUGU	-0.110
AGUGGUU	-0.115
CEBPA,B_DDIT3.p2	-0.123	DDIT3 CEBPA CEBPB
RBPJ.p2	-0.129	RBPJ
ZNF423.p2	-0.150	ZNF423
AR.p2	-0.158	AR
CGUACCG	-0.158
GGAAGAC	-0.182
PRDM1.p3	-0.185	PRDM1
AACGGAA	-0.187
FOX{C1,C2}.p2	-0.191	FOXC1 FOXC2
ZBTB6.p2	-0.196	ZBTB6
CDX1,2,4.p2	-0.201	CDX1 CDX2 CDX4
GGACGGA	-0.221
TFEB.p2	-0.221	TFEB
GGAGUGU	-0.245
PITX1..3.p2	-0.252	PITX2 PITX3 PITX1
AACCGUU	-0.257
VSX1,2.p2	-0.282	VSX2 VSX1
NKX3-1.p2	-0.351	NKX3-1
ARID5B.p2	-0.369	ARID5B
KLF4.p3	-0.371	KLF4
GZF1.p2	-0.378	GZF1
AUGUGCC	-0.378
UGCAUUG	-0.386
GCUGGUG	-0.397
SOX17.p2	-0.444	SOX17
EOMES.p2	-0.474	EOMES
SOX2.p2	-0.479	SOX2
AAGGUGC	-0.487
UAUUGCU	-0.495
SOX5.p2	-0.511	SOX5
UUGGCAA	-0.512
NFE2L1.p2	-0.527	NFE2L1
CUX2.p2	-0.541	CUX2
HOX{A4,D4}.p2	-0.576	HOXA4 HOXD4
FOSL2.p2	-0.586	FOSL2
AGCAGCG	-0.666
FOXQ1.p2	-0.669	FOXQ1
LMO2.p2	-0.697	LMO2
PAX4.p2	-0.700	PAX4
FOX{F1,F2,J1}.p2	-0.723	FOXF2 FOXJ1 FOXF1
ACAGUAC	-0.755
GCUACAU	-0.767
GAUUGUC	-0.770
MAFB.p2	-0.783	MAFB
GUAACAG	-0.866
NKX6-1,2.p2	-0.892	NKX6-1 NKX6-2
AUGGCAC	-0.932
IKZF1.p2	-1.000	IKZF1
EGR1..3.p2	-1.038	EGR3 EGR1 EGR2
AACAGUC	-1.063
ZNF148.p2	-1.068	ZNF148
CRX.p2	-1.069	CRX
ZFP161.p2	-1.079	ZFP161
GUGCAAA	-1.080
CREB1.p2	-1.092	CREB1
GFI1B.p2	-1.156	GFI1B
NR4A2.p2	-1.187	NR4A2
HOX{A6,A7,B6,B7}.p2	-1.197	HOXB6 HOXA7 HOXB7 HOXA6
PBX1.p2	-1.239	PBX1
SOX{8,9,10}.p2	-1.340	SOX9 SOX8 SOX10
SPIB.p2	-1.351	SPIB
UCAAGUA	-1.411
EP300.p2	-1.435	EP300
FOXD3.p2	-1.437	FOXD3
UCCAGUU	-1.441
TFDP1.p2	-1.476	TFDP1
BACH2.p2	-1.497	BACH2
SP1.p2	-1.583	SP1
NR5A1,2.p2	-1.601	NR5A1 NR5A2
PAX5.p2	-1.714	PAX5
SPI1.p2	-1.735	SPI1
TP53.p2	-1.742	TP53
FOXN1.p2	-1.794	FOXN1
UCACAUU	-1.886
TFAP2{A,C}.p2	-1.891	TFAP2C TFAP2A
HES1.p2	-1.943	HES1
PATZ1.p2	-1.954	PATZ1
GUAGUGU	-2.016
RXRG_dimer.p3	-2.253	NR1H2 RXRA PPARG PPARA RXRB RXRG
NKX2-2,8.p2	-2.278	NKX2-2 NKX2-8
TFAP2B.p2	-2.291	TFAP2B
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-2.303	ARNT MAX MYC USF1 BHLHB2 ARNT2
NKX3-2.p2	-2.468	NKX3-2
NFE2L2.p2	-2.474	NFE2L2
CTCF.p2	-2.482	CTCF
HIF1A.p2	-2.683	HIF1A
ATF5_CREB3.p2	-3.266	ATF5 CREB3
bHLH_family.p2	-3.798	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
ATF4.p2	-3.922	ATF4
EHF.p2	-3.928	EHF
E2F1..5.p2	-4.062	E2F4 E2F5 E2F2 E2F1 E2F3
BPTF.p2	-4.079	BPTF
XBP1.p3	-4.225	XBP1
GGAAUGU	-4.632
ELF1,2,4.p2	-4.835	ELF2 ELF1 ELF4
ESRRA.p2	-5.327	ESRRA
MYB.p2	-5.921	MYB
NFY{A,B,C}.p2	-7.046	NFYC NFYB NFYA
ZNF143.p2	-7.630	ZNF143
ELK1,4_GABP{A,B1}.p3	-8.017	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
NRF1.p2	-9.199	NRF1
YY1.p2	-11.679	YY1

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Sample name: GNF_1_DRG

Sorted z-values for every WM.