ISMARA results: GNF_1_MedullaOblongata

Sample name: GNF_1_MedullaOblongata

Sorted Z-values histogram for the sample GNF_1_MedullaOblongata

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
REST.p3	6.711	REST
RFX1..5_RFXANK_RFXAP.p2	6.532	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
CUCCCAA	6.055
KLF12.p2	5.280	KLF12
MYOD1.p2	5.054	MYOD1
UGUGCUU	5.042
TGIF1.p2	4.828	TGIF1
JUN.p2	4.579	JUN JUND JUNB
HIC1.p2	4.470	HIC1
GTF2I.p2	4.426	GTF2I
EGR1..3.p2	4.382	EGR3 EGR1 EGR2
RREB1.p2	4.249	RREB1
MZF1.p2	4.060	MZF1
GGCAGUG	3.927
NHLH1,2.p2	3.725	NHLH1 NHLH2
GATA1..3.p2	3.703	GATA1 GATA2 GATA3
ZIC1..3.p2	3.634	ZIC1 ZIC2 ZIC3
HOX{A6,A7,B6,B7}.p2	3.461	HOXB6 HOXA7 HOXB7 HOXA6
MTF1.p2	3.435	MTF1
TAL1_TCF{3,4,12}.p2	3.423	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
SMAD1..7,9.p2	3.282	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
GGCUCAG	3.223
TFCP2.p2	3.144	TFCP2
CAGCAGG	3.033
UGCAUAG	2.945
NKX2-3_NKX2-5.p2	2.861	NKX2-5 NKX2-3
POU5F1.p2	2.834	POU5F1
FOX{I1,J2}.p2	2.832	FOXI1 FOXJ2
LMO2.p2	2.827	LMO2
DBP.p2	2.808	DBP
ESRRA.p2	2.803	ESRRA
TCF4_dimer.p2	2.764	TCF4
MEF2{A,B,C,D}.p2	2.650	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
ZFP161.p2	2.507	ZFP161
SOX{8,9,10}.p2	2.486	SOX9 SOX8 SOX10
PAX2.p2	2.470	PAX2
TBX4,5.p2	2.375	TBX5 TBX4
EVI1.p2	2.347	EVI1
MAFB.p2	2.221	MAFB
FOXP3.p2	2.202	FOXP3
GGAAGAC	2.179
IKZF2.p2	2.172	IKZF2
UCCCUUU	2.128
FEV.p2	2.109	FEV
UUGGUCC	1.988
UUUUUGC	1.971
HOX{A5,B5}.p2	1.966	HOXB5 HOXA5
CCAGCAU	1.942
AUGGCUU	1.934
PAX4.p2	1.913	PAX4
ATF2.p2	1.880	ATF2
HBP1_HMGB_SSRP1_UBTF.p2	1.839	HMGB2 HMGB3 SSRP1 UBTF HBP1
NR1H4.p2	1.793	NR1H4
AAUACUG	1.765
EBF1.p2	1.744	EBF1
ACAUUCA	1.728
GTF2A1,2.p2	1.707	GTF2A1 GTF2A2
STAT2,4,6.p2	1.694	STAT2 STAT4 STAT6
AAAGUGC	1.683
MAZ.p2	1.608	MAZ
POU5F1_SOX2{dimer}.p2	1.571	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
STAT1,3.p3	1.565	STAT1 STAT3
GCUGGUG	1.515
UAUUGCU	1.513
SRY.p2	1.498	SRY
NR3C1.p2	1.484	NR3C1
HAND1,2.p2	1.481	HAND1 HAND2
SP1.p2	1.463	SP1
GUGCAAA	1.408
IKZF1.p2	1.356	IKZF1
HMX1.p2	1.351	HMX1
TLX1..3_NFIC{dimer}.p2	1.337	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
CUACAGU	1.316
NANOG{mouse}.p2	1.312	NANOG
ZBTB6.p2	1.308	ZBTB6
GAGAACU	1.301
UUGGCAC	1.301
AGUGCAA	1.284
GLI1..3.p2	1.250	GLI1 GLI2 GLI3
AUUGCAC	1.249
ALX1.p2	1.221	ALX1
NR5A1,2.p2	1.203	NR5A1 NR5A2
GUCAGUU	1.196
FOXO1,3,4.p2	1.187	FOXO1 FOXO4 FOXO3
GFI1.p2	1.181	GFI1
NFIL3.p2	1.173	NFIL3
EWSR1-FLI1.p2	1.172	FLI1 EWSR1
UAAGACG	1.159
AAGUGCU	1.139
GAUCAGA	1.079
CACAGUG	1.043
LEF1_TCF7_TCF7L1,2.p2	1.015	TCF7 TCF7L2 LEF1 TCF7L1
SPZ1.p2	1.005	SPZ1
FOX{F1,F2,J1}.p2	0.999	FOXF2 FOXJ1 FOXF1
GGCAAGA	0.994
NANOG.p2	0.990	NANOG
NKX3-1.p2	0.989	NKX3-1
MYFfamily.p2	0.934	MYOD1 MYF6 MYF5 MYOG
GAGAUGA	0.923
ESR1.p2	0.906	ESR1
CEBPA,B_DDIT3.p2	0.857	DDIT3 CEBPA CEBPB
PRRX1,2.p2	0.826	PRRX2 PRRX1
RORA.p2	0.810	RORA
UGAAAUG	0.804
RXR{A,B,G}.p2	0.786	RXRA RXRB RXRG
GCUACAU	0.765
ACUGGCC	0.764
UCACAGU	0.756
CDC5L.p2	0.749	CDC5L
SREBF1,2.p2	0.743	SREBF1 SREBF2
SOX2.p2	0.699	SOX2
CUX2.p2	0.690	CUX2
HMGA1,2.p2	0.673	HMGA1 HMGA2
RXRA_VDR{dimer}.p2	0.669	VDR	$logo of RXRA_VDR{dimer}.p2$
EOMES.p2	0.659	EOMES
SNAI1..3.p2	0.654	SNAI2 SNAI1 SNAI3
PAX3,7.p2	0.653	PAX7 PAX3
POU1F1.p2	0.647	POU1F1
AGCAGCA	0.646
RUNX1..3.p2	0.637	RUNX1 RUNX3 RUNX2
STAT5{A,B}.p2	0.623	STAT5B STAT5A
GUAAACA	0.611
NFIX.p2	0.578	NFIX
AGCUGCC	0.557
ZNF423.p2	0.534	ZNF423
GZF1.p2	0.530	GZF1
FOS_FOS{B,L1}_JUN{B,D}.p2	0.528	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
FOX{D1,D2}.p2	0.508	FOXD2 FOXD1
UAAGACU	0.499
UGCAUUG	0.499
HNF4A_NR2F1,2.p2	0.482	NR2F1 NR2F2 HNF4A
UGUGCGU	0.468
PDX1.p2	0.463	PDX1
FOXL1.p2	0.453	FOXL1
TFEB.p2	0.445	TFEB
AGCAGCG	0.433
CGUGUCU	0.423
NKX2-1,4.p2	0.414	NKX2-1 NKX2-4
AACAGUC	0.413
GCAGCAU	0.406
EN1,2.p2	0.400	EN1 EN2
PAX6.p2	0.377	PAX6
AR.p2	0.365	AR
HOXA9_MEIS1.p2	0.342	MEIS1 HOXA9
CTCF.p2	0.302	CTCF
ACUGCAU	0.282
HLF.p2	0.258	HLF
NR4A2.p2	0.255	NR4A2
CCCUGAG	0.242
AAGGUGC	0.207
LHX3,4.p2	0.159	LHX3 LHX4
NFE2L1.p2	0.150	NFE2L1
NFE2.p2	0.134	NFE2
TEAD1.p2	0.134	TEAD1 TEAD2 TEAD3 TEAD4
AGGUAGU	0.129
ZNF384.p2	0.128	ZNF384
ACCCUGU	0.128
NR6A1.p2	0.126	NR6A1
PAX8.p2	0.105	PAX8
GGACGGA	0.101
AAUCUCU	0.095
ETS1,2.p2	0.084	ETS2 ETS1
CAGUGCA	0.079
POU3F1..4.p2	0.057	POU3F1 POU3F3 POU3F2 POU3F4
AUGACAC	0.028
POU2F1..3.p2	0.024	POU2F2 POU2F1 POU2F3
HES1.p2	0.020	HES1
MSX1,2.p2	0.011	MSX1 MSX2
TLX2.p2	0.010	TLX2
CGUACCG	-0.027
AACCGUU	-0.030
UGACCUA	-0.036
ACCCGUA	-0.055
AACGGAA	-0.068
GFI1B.p2	-0.076	GFI1B
GGAGUGU	-0.081
AIRE.p2	-0.115	AIRE
AACACUG	-0.126
SOX5.p2	-0.133	SOX5
VSX1,2.p2	-0.135	VSX2 VSX1
AAUCUCA	-0.153
GAGGUAG	-0.161
NKX6-1,2.p2	-0.180	NKX6-1 NKX6-2
AACCUGG	-0.190
MYBL2.p2	-0.196	MYBL2
ZEB1.p2	-0.243	ZEB1
NFATC1..3.p2	-0.245	NFATC3 NFATC2 NFATC1
CRX.p2	-0.285	CRX
ZNF238.p2	-0.344	ZNF238
FOX{C1,C2}.p2	-0.351	FOXC1 FOXC2
CDX1,2,4.p2	-0.378	CDX1 CDX2 CDX4
NKX3-2.p2	-0.396	NKX3-2
UUGUUCG	-0.417
AAUGCCC	-0.486
UUGGCAA	-0.492
AGCUUAU	-0.524
TFAP2B.p2	-0.544	TFAP2B
GAUAUGU	-0.565
HSF1,2.p2	-0.583	HSF1 HSF2
ARID5B.p2	-0.587	ARID5B
POU6F1.p2	-0.600	POU6F1
RBPJ.p2	-0.615	RBPJ
AUGGCAC	-0.657
UCCAGUU	-0.664
GUAACAG	-0.687
T.p2	-0.691	T
NKX2-2,8.p2	-0.757	NKX2-2 NKX2-8
CCUUCAU	-0.763
ADNP_IRX_SIX_ZHX.p2	-0.763	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
HNF1A.p2	-0.808	HNF1A
HOX{A4,D4}.p2	-0.850	HOXA4 HOXD4
TFAP2{A,C}.p2	-0.895	TFAP2C TFAP2A
GATA6.p2	-0.901	GATA6
PRDM1.p3	-1.008	PRDM1
CCAGUGU	-1.079
FOSL2.p2	-1.141	FOSL2
AGCACCA	-1.210
NFE2L2.p2	-1.245	NFE2L2
GUAGUGU	-1.329
AGUGGUU	-1.334
PBX1.p2	-1.360	PBX1
FOXN1.p2	-1.388	FOXN1
ACAGUAC	-1.394
ONECUT1,2.p2	-1.426	ONECUT2 ONECUT1
PITX1..3.p2	-1.440	PITX2 PITX3 PITX1
PAX5.p2	-1.453	PAX5
AUGUGCC	-1.460
DMAP1_NCOR{1,2}_SMARC.p2	-1.484	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
UCACAUU	-1.529
ATF5_CREB3.p2	-1.606	ATF5 CREB3
ATF6.p2	-1.622	ATF6
UAAUGCU	-1.625
ZNF148.p2	-1.737	ZNF148
FOXQ1.p2	-1.803	FOXQ1
FOXA2.p3	-1.879	FOXA2
SRF.p3	-1.892	SRF
ACAGUAU	-1.944
GGAAUGU	-1.948
GAUUGUC	-1.985
TFAP4.p2	-2.096	TFAP4
TBP.p2	-2.134	TBP
UCAAGUA	-2.143
SPIB.p2	-2.180	SPIB
EP300.p2	-2.188	EP300
CREB1.p2	-2.197	CREB1
TP53.p2	-2.294	TP53
HIF1A.p2	-2.339	HIF1A
ZBTB16.p2	-2.342	ZBTB16
ATF4.p2	-2.412	ATF4
PPARG.p2	-2.466	PPARG
RXRG_dimer.p3	-2.519	NR1H2 RXRA PPARG PPARA RXRB RXRG
BACH2.p2	-2.537	BACH2
CUUUGGU	-2.557
KLF4.p3	-2.634	KLF4
FOXD3.p2	-2.648	FOXD3
bHLH_family.p2	-2.669	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
IRF1,2,7.p3	-2.674	IRF1 IRF2 IRF7
SOX17.p2	-2.782	SOX17
NFKB1_REL_RELA.p2	-2.822	RELA REL NFKB1
PATZ1.p2	-2.864	PATZ1
ZNF143.p2	-3.029	ZNF143
BPTF.p2	-3.151	BPTF
AHR_ARNT_ARNT2.p2	-3.220	ARNT AHR ARNT2
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-3.273	ARNT MAX MYC USF1 BHLHB2 ARNT2
EHF.p2	-3.522	EHF
MYB.p2	-3.671	MYB
NRF1.p2	-4.286	NRF1
SPI1.p2	-4.516	SPI1
XBP1.p3	-4.703	XBP1
TFDP1.p2	-4.792	TFDP1
AAGGCAC	-4.913
ELK1,4_GABP{A,B1}.p3	-5.079	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
E2F1..5.p2	-5.937	E2F4 E2F5 E2F2 E2F1 E2F3
ELF1,2,4.p2	-6.845	ELF2 ELF1 ELF4
YY1.p2	-7.026	YY1
NFY{A,B,C}.p2	-7.291	NFYC NFYB NFYA

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Sample name: GNF_1_MedullaOblongata

Sorted z-values for every WM.