ISMARA results: GNF_1

Sample name: GNF_1_Pons

Sorted Z-values histogram for the sample GNF_1_Pons

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
CUCCCAA	8.306
RFX1..5_RFXANK_RFXAP.p2	6.661	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
REST.p3	6.457	REST
KLF12.p2	5.007	KLF12
RREB1.p2	4.982	RREB1
UUUUUGC	4.777
JUN.p2	4.720	JUN JUND JUNB
MTF1.p2	4.530	MTF1
UGUGCUU	4.476
MYOD1.p2	4.454	MYOD1
MZF1.p2	4.310	MZF1
HIC1.p2	4.128	HIC1
ZIC1..3.p2	4.053	ZIC1 ZIC2 ZIC3
TGIF1.p2	3.943	TGIF1
GTF2I.p2	3.785	GTF2I
POU5F1.p2	3.618	POU5F1
SMAD1..7,9.p2	3.519	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
EGR1..3.p2	3.460	EGR3 EGR1 EGR2
TLX1..3_NFIC{dimer}.p2	3.443	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
GGCAGUG	3.442
NHLH1,2.p2	3.357	NHLH1 NHLH2
TCF4_dimer.p2	3.253	TCF4
GGCUCAG	3.164
UGCAUAG	3.115
TAL1_TCF{3,4,12}.p2	3.075	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
EVI1.p2	2.950	EVI1
NKX2-3_NKX2-5.p2	2.935	NKX2-5 NKX2-3
GTF2A1,2.p2	2.852	GTF2A1 GTF2A2
EBF1.p2	2.829	EBF1
SOX{8,9,10}.p2	2.734	SOX9 SOX8 SOX10
ALX1.p2	2.658	ALX1
HOX{A6,A7,B6,B7}.p2	2.595	HOXB6 HOXA7 HOXB7 HOXA6
FEV.p2	2.590	FEV
GATA1..3.p2	2.573	GATA1 GATA2 GATA3
FOX{I1,J2}.p2	2.507	FOXI1 FOXJ2
FOXP3.p2	2.499	FOXP3
MEF2{A,B,C,D}.p2	2.435	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
TBX4,5.p2	2.406	TBX5 TBX4
PAX2.p2	2.362	PAX2
UCCCUUU	2.292
ZFP161.p2	2.281	ZFP161
STAT1,3.p3	2.095	STAT1 STAT3
AUGGCUU	2.093
CAGCAGG	2.088
LMO2.p2	2.063	LMO2
HAND1,2.p2	2.010	HAND1 HAND2
NR1H4.p2	2.008	NR1H4
TFCP2.p2	1.998	TFCP2
AAAGUGC	1.959
STAT2,4,6.p2	1.906	STAT2 STAT4 STAT6
NANOG{mouse}.p2	1.868	NANOG
CCAGCAU	1.866
LEF1_TCF7_TCF7L1,2.p2	1.822	TCF7 TCF7L2 LEF1 TCF7L1
IKZF2.p2	1.804	IKZF2
GGAAGAC	1.766
NR3C1.p2	1.739	NR3C1
DBP.p2	1.693	DBP
AAUACUG	1.670
HMX1.p2	1.631	HMX1
RXR{A,B,G}.p2	1.584	RXRA RXRB RXRG
SRY.p2	1.578	SRY
CACAGUG	1.555
GAGAACU	1.540
HOX{A5,B5}.p2	1.528	HOXB5 HOXA5
GAGAUGA	1.520
CUACAGU	1.498
MYFfamily.p2	1.496	MYOD1 MYF6 MYF5 MYOG
ZNF423.p2	1.454	ZNF423
HBP1_HMGB_SSRP1_UBTF.p2	1.439	HMGB2 HMGB3 SSRP1 UBTF HBP1
GGCAAGA	1.366
POU5F1_SOX2{dimer}.p2	1.338	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
UUGGUCC	1.334
EN1,2.p2	1.333	EN1 EN2
UGAAAUG	1.316
RUNX1..3.p2	1.311	RUNX1 RUNX3 RUNX2
GLI1..3.p2	1.284	GLI1 GLI2 GLI3
HNF4A_NR2F1,2.p2	1.240	NR2F1 NR2F2 HNF4A
NANOG.p2	1.232	NANOG
AGCAGCA	1.216
IKZF1.p2	1.163	IKZF1
CDC5L.p2	1.116	CDC5L
PAX4.p2	1.016	PAX4
UAUUGCU	1.011
NR4A2.p2	1.007	NR4A2
MAZ.p2	1.004	MAZ
GUCAGUU	0.991
FOX{F1,F2,J1}.p2	0.968	FOXF2 FOXJ1 FOXF1
GAGGUAG	0.964
AGCUGCC	0.959
GAUCAGA	0.956
UAAGACG	0.952
GCUGGUG	0.941
TLX2.p2	0.935	TLX2
UUGGCAC	0.928
POU1F1.p2	0.866	POU1F1
ATF2.p2	0.854	ATF2
RORA.p2	0.841	RORA
TEAD1.p2	0.835	TEAD1 TEAD2 TEAD3 TEAD4
PRRX1,2.p2	0.824	PRRX2 PRRX1
PDX1.p2	0.813	PDX1
SPZ1.p2	0.758	SPZ1
POU2F1..3.p2	0.745	POU2F2 POU2F1 POU2F3
CGUGUCU	0.742
SNAI1..3.p2	0.733	SNAI2 SNAI1 SNAI3
SREBF1,2.p2	0.684	SREBF1 SREBF2
UCACAGU	0.681
NR5A1,2.p2	0.681	NR5A1 NR5A2
STAT5{A,B}.p2	0.675	STAT5B STAT5A
UGCAUUG	0.674
AUUGCAC	0.645
ACUGCAU	0.643
AGUGCAA	0.637
NFIL3.p2	0.634	NFIL3
LHX3,4.p2	0.632	LHX3 LHX4
MAFB.p2	0.624	MAFB
ACAUUCA	0.623
NFIX.p2	0.592	NFIX
AAGUGCU	0.587
ESRRA.p2	0.584	ESRRA
EWSR1-FLI1.p2	0.583	FLI1 EWSR1
PAX6.p2	0.578	PAX6
GUAAACA	0.578
PAX3,7.p2	0.559	PAX7 PAX3
FOX{D1,D2}.p2	0.554	FOXD2 FOXD1
POU6F1.p2	0.511	POU6F1
SP1.p2	0.511	SP1
GATA6.p2	0.506	GATA6
NFATC1..3.p2	0.504	NFATC3 NFATC2 NFATC1
GFI1.p2	0.498	GFI1
POU3F1..4.p2	0.484	POU3F1 POU3F3 POU3F2 POU3F4
AIRE.p2	0.479	AIRE
UAAGACU	0.472
UGUGCGU	0.447
HMGA1,2.p2	0.430	HMGA1 HMGA2
FOXO1,3,4.p2	0.427	FOXO1 FOXO4 FOXO3
NKX2-1,4.p2	0.426	NKX2-1 NKX2-4
ACUGGCC	0.421
ZEB1.p2	0.396	ZEB1
CUX2.p2	0.393	CUX2
AACAGUC	0.342
AR.p2	0.342	AR
ZBTB6.p2	0.322	ZBTB6
FOS_FOS{B,L1}_JUN{B,D}.p2	0.317	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
MYBL2.p2	0.310	MYBL2
TFEB.p2	0.303	TFEB
CCCUGAG	0.298
HOXA9_MEIS1.p2	0.294	MEIS1 HOXA9
AGCAGCG	0.293
AAUCUCU	0.292
ACCCUGU	0.248
AUGACAC	0.237
HLF.p2	0.230	HLF
GUGCAAA	0.212
GGACGGA	0.185
GZF1.p2	0.182	GZF1
ZNF384.p2	0.177	ZNF384
PAX8.p2	0.171	PAX8
FOX{C1,C2}.p2	0.169	FOXC1 FOXC2
CGUACCG	0.141
GCAGCAU	0.140
AAGGUGC	0.127
ZNF238.p2	0.112	ZNF238
AACGGAA	0.103
MSX1,2.p2	0.091	MSX1 MSX2
ETS1,2.p2	0.065	ETS2 ETS1
AAUCUCA	0.056
RBPJ.p2	0.030	RBPJ
EOMES.p2	0.023	EOMES
RXRA_VDR{dimer}.p2	0.016	VDR	$logo of RXRA_VDR{dimer}.p2$
HSF1,2.p2	0.009	HSF1 HSF2
SOX2.p2	-0.015	SOX2
GCUACAU	-0.025
CAGUGCA	-0.037
NKX3-1.p2	-0.052	NKX3-1
CEBPA,B_DDIT3.p2	-0.060	DDIT3 CEBPA CEBPB
AACACUG	-0.064
ACCCGUA	-0.067
UGACCUA	-0.097
HNF1A.p2	-0.121	HNF1A
ARID5B.p2	-0.167	ARID5B
AACCGUU	-0.168
UUGUUCG	-0.170
AACCUGG	-0.171
NKX6-1,2.p2	-0.263	NKX6-1 NKX6-2
TBP.p2	-0.269	TBP
NR6A1.p2	-0.280	NR6A1
GGAGUGU	-0.312
AGGUAGU	-0.315
VSX1,2.p2	-0.336	VSX2 VSX1
ADNP_IRX_SIX_ZHX.p2	-0.375	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
FOSL2.p2	-0.403	FOSL2
AAUGCCC	-0.431
GAUAUGU	-0.434
NFE2L1.p2	-0.447	NFE2L1
NFE2.p2	-0.496	NFE2
FOXA2.p3	-0.541	FOXA2
FOXL1.p2	-0.546	FOXL1
TFAP2{A,C}.p2	-0.570	TFAP2C TFAP2A
CDX1,2,4.p2	-0.593	CDX1 CDX2 CDX4
T.p2	-0.599	T
HOX{A4,D4}.p2	-0.632	HOXA4 HOXD4
GFI1B.p2	-0.656	GFI1B
CCAGUGU	-0.696
CCUUCAU	-0.712
AGCACCA	-0.776
AGCUUAU	-0.789
ESR1.p2	-0.814	ESR1
PRDM1.p3	-0.835	PRDM1
NKX3-2.p2	-0.863	NKX3-2
CRX.p2	-0.900	CRX
DMAP1_NCOR{1,2}_SMARC.p2	-0.955	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
GUAACAG	-1.019
UUGGCAA	-1.055
SOX5.p2	-1.083	SOX5
NFE2L2.p2	-1.103	NFE2L2
CTCF.p2	-1.135	CTCF
GUAGUGU	-1.148
UCCAGUU	-1.249
AUGUGCC	-1.295
NKX2-2,8.p2	-1.362	NKX2-2 NKX2-8
AUGGCAC	-1.372
TFAP2B.p2	-1.382	TFAP2B
PITX1..3.p2	-1.383	PITX2 PITX3 PITX1
GAUUGUC	-1.396
ONECUT1,2.p2	-1.415	ONECUT2 ONECUT1
ACAGUAC	-1.456
ACAGUAU	-1.465
ZBTB16.p2	-1.490	ZBTB16
HES1.p2	-1.538	HES1
UAAUGCU	-1.559
NFKB1_REL_RELA.p2	-1.568	RELA REL NFKB1
UCACAUU	-1.656
ATF6.p2	-1.702	ATF6
PAX5.p2	-1.730	PAX5
PPARG.p2	-1.752	PPARG
ZNF148.p2	-1.782	ZNF148
TFAP4.p2	-1.887	TFAP4
AGUGGUU	-1.888
FOXN1.p2	-1.967	FOXN1
UCAAGUA	-1.974
IRF1,2,7.p3	-1.997	IRF1 IRF2 IRF7
HIF1A.p2	-2.081	HIF1A
FOXQ1.p2	-2.144	FOXQ1
PBX1.p2	-2.162	PBX1
TP53.p2	-2.191	TP53
ATF5_CREB3.p2	-2.208	ATF5 CREB3
BACH2.p2	-2.336	BACH2
KLF4.p3	-2.388	KLF4
CUUUGGU	-2.406
PATZ1.p2	-2.473	PATZ1
SPIB.p2	-2.475	SPIB
SRF.p3	-2.521	SRF
ATF4.p2	-2.665	ATF4
EP300.p2	-2.698	EP300
FOXD3.p2	-2.875	FOXD3
GGAAUGU	-2.894
bHLH_family.p2	-2.916	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
AHR_ARNT_ARNT2.p2	-2.981	ARNT AHR ARNT2
CREB1.p2	-3.095	CREB1
BPTF.p2	-3.129	BPTF
SOX17.p2	-3.255	SOX17
RXRG_dimer.p3	-3.393	NR1H2 RXRA PPARG PPARA RXRB RXRG
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-3.659	ARNT MAX MYC USF1 BHLHB2 ARNT2
EHF.p2	-4.109	EHF
XBP1.p3	-4.414	XBP1
SPI1.p2	-4.734	SPI1
AAGGCAC	-4.755
MYB.p2	-4.917	MYB
ZNF143.p2	-5.039	ZNF143
TFDP1.p2	-5.053	TFDP1
E2F1..5.p2	-5.522	E2F4 E2F5 E2F2 E2F1 E2F3
ELK1,4_GABP{A,B1}.p3	-6.092	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
NRF1.p2	-6.998	NRF1
ELF1,2,4.p2	-7.193	ELF2 ELF1 ELF4
NFY{A,B,C}.p2	-7.913	NFYC NFYB NFYA
YY1.p2	-9.343	YY1

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Sample name: GNF_1_Pons

Sorted z-values for every WM.