ISMARA results: GNF_1

Sample name: GNF_1_Thalamus

Sorted Z-values histogram for the sample GNF_1_Thalamus

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
REST.p3	7.151	REST
RFX1..5_RFXANK_RFXAP.p2	5.830	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
KLF12.p2	5.462	KLF12
HIC1.p2	5.024	HIC1
RREB1.p2	4.126	RREB1
JUN.p2	4.044	JUN JUND JUNB
MYOD1.p2	4.017	MYOD1
TCF4_dimer.p2	3.976	TCF4
SMAD1..7,9.p2	3.929	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
CAGCAGG	3.923
TFCP2.p2	3.913	TFCP2
ATF2.p2	3.567	ATF2
UGUGCUU	3.511
CUCCCAA	3.495
TGIF1.p2	3.428	TGIF1
ZIC1..3.p2	3.420	ZIC1 ZIC2 ZIC3
HOX{A5,B5}.p2	3.272	HOXB5 HOXA5
GGCAGUG	3.245
ZFP161.p2	3.229	ZFP161
MTF1.p2	3.214	MTF1
NHLH1,2.p2	3.204	NHLH1 NHLH2
TAL1_TCF{3,4,12}.p2	3.180	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
HAND1,2.p2	3.164	HAND1 HAND2
GATA1..3.p2	3.106	GATA1 GATA2 GATA3
EBF1.p2	2.923	EBF1
ESRRA.p2	2.876	ESRRA
MEF2{A,B,C,D}.p2	2.859	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
EVI1.p2	2.859	EVI1
GGCUCAG	2.806
GTF2I.p2	2.757	GTF2I
HNF4A_NR2F1,2.p2	2.668	NR2F1 NR2F2 HNF4A
MAFB.p2	2.576	MAFB
RXR{A,B,G}.p2	2.553	RXRA RXRB RXRG
PAX2.p2	2.449	PAX2
FOX{I1,J2}.p2	2.442	FOXI1 FOXJ2
UUGGCAC	2.324
SOX{8,9,10}.p2	2.321	SOX9 SOX8 SOX10
MYFfamily.p2	2.296	MYOD1 MYF6 MYF5 MYOG
PAX4.p2	2.254	PAX4
UGCAUAG	2.213
CACAGUG	2.187
FEV.p2	2.182	FEV
AUGGCUU	2.169
GTF2A1,2.p2	2.169	GTF2A1 GTF2A2
LMO2.p2	2.164	LMO2
UUGGUCC	2.127
FOXP3.p2	2.117	FOXP3
ZBTB6.p2	2.116	ZBTB6
NFIX.p2	2.069	NFIX
TLX1..3_NFIC{dimer}.p2	2.060	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
SOX2.p2	1.898	SOX2
HOX{A6,A7,B6,B7}.p2	1.889	HOXB6 HOXA7 HOXB7 HOXA6
TBX4,5.p2	1.886	TBX5 TBX4
DBP.p2	1.839	DBP
EN1,2.p2	1.789	EN1 EN2
UAUUGCU	1.692
NR1H4.p2	1.666	NR1H4
NR5A1,2.p2	1.661	NR5A1 NR5A2
SP1.p2	1.579	SP1
MZF1.p2	1.578	MZF1
SPZ1.p2	1.575	SPZ1
AUUGCAC	1.558
AAAGUGC	1.552
NR4A2.p2	1.513	NR4A2
NKX2-3_NKX2-5.p2	1.512	NKX2-5 NKX2-3
FOXO1,3,4.p2	1.505	FOXO1 FOXO4 FOXO3
UAAGACG	1.502
UCCCUUU	1.495
STAT2,4,6.p2	1.494	STAT2 STAT4 STAT6
ESR1.p2	1.454	ESR1
SRY.p2	1.438	SRY
POU5F1.p2	1.406	POU5F1
NANOG{mouse}.p2	1.373	NANOG
STAT1,3.p3	1.353	STAT1 STAT3
AGCAGCA	1.338
TFEB.p2	1.316	TFEB
GUCAGUU	1.313
EWSR1-FLI1.p2	1.295	FLI1 EWSR1
EGR1..3.p2	1.293	EGR3 EGR1 EGR2
AGUGCAA	1.200
IKZF1.p2	1.192	IKZF1
GUGCAAA	1.106
IKZF2.p2	1.091	IKZF2
GAGAUGA	1.054
MSX1,2.p2	1.051	MSX1 MSX2
GLI1..3.p2	1.050	GLI1 GLI2 GLI3
GAGAACU	1.037
AAGUGCU	0.921
GGAAGAC	0.906
UAAGACU	0.890
CGUGUCU	0.888
ZNF423.p2	0.879	ZNF423
GGCAAGA	0.873
CUACAGU	0.873
PAX6.p2	0.856	PAX6
CCAGCAU	0.847
CEBPA,B_DDIT3.p2	0.825	DDIT3 CEBPA CEBPB
MAZ.p2	0.822	MAZ
HMX1.p2	0.802	HMX1
GCUACAU	0.790
CGUACCG	0.785
PRRX1,2.p2	0.748	PRRX2 PRRX1
GAUCAGA	0.739
NKX2-1,4.p2	0.663	NKX2-1 NKX2-4
TEAD1.p2	0.656	TEAD1 TEAD2 TEAD3 TEAD4
HMGA1,2.p2	0.641	HMGA1 HMGA2
RXRA_VDR{dimer}.p2	0.635	VDR	$logo of RXRA_VDR{dimer}.p2$
UGCAUUG	0.628
SNAI1..3.p2	0.618	SNAI2 SNAI1 SNAI3
POU5F1_SOX2{dimer}.p2	0.615	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
RORA.p2	0.613	RORA
NFIL3.p2	0.572	NFIL3
ETS1,2.p2	0.566	ETS2 ETS1
RUNX1..3.p2	0.558	RUNX1 RUNX3 RUNX2
AACAGUC	0.553
CUX2.p2	0.552	CUX2
NKX3-1.p2	0.536	NKX3-1
POU6F1.p2	0.519	POU6F1
CCCUGAG	0.515
GFI1.p2	0.480	GFI1
CAGUGCA	0.466
LEF1_TCF7_TCF7L1,2.p2	0.461	TCF7 TCF7L2 LEF1 TCF7L1
CRX.p2	0.438	CRX
POU1F1.p2	0.432	POU1F1
AACGGAA	0.424
PAX3,7.p2	0.413	PAX7 PAX3
TBP.p2	0.391	TBP
NFE2L1.p2	0.378	NFE2L1
UGAAAUG	0.358
UGUGCGU	0.325
AIRE.p2	0.316	AIRE
AGCUGCC	0.310
CDC5L.p2	0.308	CDC5L
AACACUG	0.306
CTCF.p2	0.303	CTCF
AAUACUG	0.298
SREBF1,2.p2	0.297	SREBF1 SREBF2
ZNF384.p2	0.293	ZNF384
NR3C1.p2	0.289	NR3C1
ACUGGCC	0.277
AR.p2	0.267	AR
HSF1,2.p2	0.250	HSF1 HSF2
NR6A1.p2	0.247	NR6A1
ALX1.p2	0.245	ALX1
GZF1.p2	0.245	GZF1
CCUUCAU	0.229
PDX1.p2	0.181	PDX1
FOX{F1,F2,J1}.p2	0.173	FOXF2 FOXJ1 FOXF1
TFAP2{A,C}.p2	0.173	TFAP2C TFAP2A
AUGACAC	0.166
NANOG.p2	0.144	NANOG
GGACGGA	0.125
NKX3-2.p2	0.038	NKX3-2
GGAGUGU	0.034
AGCAGCG	0.021
CCAGUGU	0.017
GCUGGUG	0.011
POU3F1..4.p2	0.005	POU3F1 POU3F3 POU3F2 POU3F4
HOXA9_MEIS1.p2	-0.001	MEIS1 HOXA9
PAX8.p2	-0.002	PAX8
UGACCUA	-0.007
GATA6.p2	-0.014	GATA6
AACCGUU	-0.040
ACCCGUA	-0.083
ZEB1.p2	-0.084	ZEB1
T.p2	-0.091	T
NFE2L2.p2	-0.102	NFE2L2
HLF.p2	-0.128	HLF
TLX2.p2	-0.132	TLX2
MYBL2.p2	-0.139	MYBL2
STAT5{A,B}.p2	-0.152	STAT5B STAT5A
ACAUUCA	-0.169
FOXL1.p2	-0.184	FOXL1
LHX3,4.p2	-0.195	LHX3 LHX4
FOX{C1,C2}.p2	-0.209	FOXC1 FOXC2
AAUCUCA	-0.216
AAGGUGC	-0.226
HNF1A.p2	-0.243	HNF1A
NFE2.p2	-0.256	NFE2
VSX1,2.p2	-0.268	VSX2 VSX1
CDX1,2,4.p2	-0.278	CDX1 CDX2 CDX4
GAGGUAG	-0.333
EOMES.p2	-0.339	EOMES
UUGUUCG	-0.375
UCACAGU	-0.380
GCAGCAU	-0.380
ARID5B.p2	-0.396	ARID5B
GUAAACA	-0.412
ACUGCAU	-0.418
NKX6-1,2.p2	-0.440	NKX6-1 NKX6-2
FOX{D1,D2}.p2	-0.450	FOXD2 FOXD1
AAUCUCU	-0.455
ZNF238.p2	-0.456	ZNF238
HBP1_HMGB_SSRP1_UBTF.p2	-0.462	HMGB2 HMGB3 SSRP1 UBTF HBP1
ACCCUGU	-0.512
FOS_FOS{B,L1}_JUN{B,D}.p2	-0.561	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
FOSL2.p2	-0.569	FOSL2
GAUAUGU	-0.593
PATZ1.p2	-0.594	PATZ1
ADNP_IRX_SIX_ZHX.p2	-0.626	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
BACH2.p2	-0.637	BACH2
TP53.p2	-0.690	TP53
HES1.p2	-0.740	HES1
AAUGCCC	-0.786
NFATC1..3.p2	-0.811	NFATC3 NFATC2 NFATC1
GUAACAG	-0.812
NKX2-2,8.p2	-0.821	NKX2-2 NKX2-8
SOX5.p2	-0.840	SOX5
HOX{A4,D4}.p2	-0.874	HOXA4 HOXD4
GFI1B.p2	-0.921	GFI1B
AUGGCAC	-0.960
DMAP1_NCOR{1,2}_SMARC.p2	-0.968	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
UUUUUGC	-1.014
AGGUAGU	-1.017
ONECUT1,2.p2	-1.045	ONECUT2 ONECUT1
AGUGGUU	-1.062
AACCUGG	-1.114
ATF4.p2	-1.115	ATF4
TFAP2B.p2	-1.184	TFAP2B
UCACAUU	-1.192
UAAUGCU	-1.279
ACAGUAC	-1.313
AGCACCA	-1.321
POU2F1..3.p2	-1.397	POU2F2 POU2F1 POU2F3
FOXQ1.p2	-1.427	FOXQ1
PBX1.p2	-1.458	PBX1
AUGUGCC	-1.463
UCCAGUU	-1.481
PPARG.p2	-1.498	PPARG
GUAGUGU	-1.523
FOXA2.p3	-1.525	FOXA2
PRDM1.p3	-1.651	PRDM1
KLF4.p3	-1.688	KLF4
CUUUGGU	-1.797
GAUUGUC	-1.806
ACAGUAU	-1.835
UUGGCAA	-1.876
RBPJ.p2	-1.894	RBPJ
BPTF.p2	-1.925	BPTF
PAX5.p2	-1.965	PAX5
IRF1,2,7.p3	-2.018	IRF1 IRF2 IRF7
ZNF148.p2	-2.021	ZNF148
ATF6.p2	-2.053	ATF6
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-2.068	ARNT MAX MYC USF1 BHLHB2 ARNT2
HIF1A.p2	-2.083	HIF1A
SRF.p3	-2.102	SRF
EP300.p2	-2.111	EP300
FOXN1.p2	-2.157	FOXN1
AGCUUAU	-2.162
ZBTB16.p2	-2.198	ZBTB16
TFAP4.p2	-2.203	TFAP4
FOXD3.p2	-2.284	FOXD3
XBP1.p3	-2.394	XBP1
RXRG_dimer.p3	-2.521	NR1H2 RXRA PPARG PPARA RXRB RXRG
SOX17.p2	-2.539	SOX17
GGAAUGU	-2.622
SPIB.p2	-2.661	SPIB
ATF5_CREB3.p2	-2.694	ATF5 CREB3
PITX1..3.p2	-2.854	PITX2 PITX3 PITX1
UCAAGUA	-3.222
AHR_ARNT_ARNT2.p2	-3.306	ARNT AHR ARNT2
CREB1.p2	-3.371	CREB1
NFKB1_REL_RELA.p2	-3.427	RELA REL NFKB1
bHLH_family.p2	-3.600	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
EHF.p2	-3.786	EHF
ZNF143.p2	-3.803	ZNF143
ELK1,4_GABP{A,B1}.p3	-4.099	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
AAGGCAC	-4.453
NRF1.p2	-4.536	NRF1
SPI1.p2	-4.637	SPI1
MYB.p2	-4.833	MYB
NFY{A,B,C}.p2	-5.798	NFYC NFYB NFYA
ELF1,2,4.p2	-6.282	ELF2 ELF1 ELF4
E2F1..5.p2	-6.535	E2F4 E2F5 E2F2 E2F1 E2F3
YY1.p2	-6.699	YY1
TFDP1.p2	-6.891	TFDP1

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Sample name: GNF_1_Thalamus

Sorted z-values for every WM.