ISMARA results: GNF_1

Sample name: GNF_1_Thyroid

Sorted Z-values histogram for the sample GNF_1_Thyroid

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
MEF2{A,B,C,D}.p2	5.172	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
SRF.p3	4.676	SRF
NFIX.p2	4.248	NFIX
SP1.p2	4.068	SP1
TBP.p2	3.971	TBP
AAGGCAC	3.625
ESR1.p2	3.046	ESR1
AR.p2	2.803	AR
NR5A1,2.p2	2.682	NR5A1 NR5A2
SNAI1..3.p2	2.676	SNAI2 SNAI1 SNAI3
POU6F1.p2	2.624	POU6F1
TEAD1.p2	2.570	TEAD1 TEAD2 TEAD3 TEAD4
XBP1.p3	2.557	XBP1
MYFfamily.p2	2.526	MYOD1 MYF6 MYF5 MYOG
TFAP4.p2	2.520	TFAP4
ACAGUAU	2.417
GGAAUGU	2.369
CCAGUGU	2.300
UCCAGUU	2.286
SREBF1,2.p2	2.209	SREBF1 SREBF2
NKX6-1,2.p2	2.112	NKX6-1 NKX6-2
MAZ.p2	2.101	MAZ
TFAP2{A,C}.p2	2.077	TFAP2C TFAP2A
GUAGUGU	2.077
TCF4_dimer.p2	2.014	TCF4
FOXA2.p3	1.938	FOXA2
TLX1..3_NFIC{dimer}.p2	1.898	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
POU2F1..3.p2	1.888	POU2F2 POU2F1 POU2F3
MTF1.p2	1.795	MTF1
CUUUGGU	1.789
POU5F1.p2	1.778	POU5F1
CREB1.p2	1.743	CREB1
TP53.p2	1.712	TP53
PRDM1.p3	1.659	PRDM1
NR4A2.p2	1.653	NR4A2
HBP1_HMGB_SSRP1_UBTF.p2	1.639	HMGB2 HMGB3 SSRP1 UBTF HBP1
PAX2.p2	1.625	PAX2
FOSL2.p2	1.621	FOSL2
CDC5L.p2	1.617	CDC5L
AGCUUAU	1.616
DBP.p2	1.493	DBP
FOXO1,3,4.p2	1.426	FOXO1 FOXO4 FOXO3
CDX1,2,4.p2	1.396	CDX1 CDX2 CDX4
PPARG.p2	1.366	PPARG
TFEB.p2	1.342	TFEB
HOX{A5,B5}.p2	1.309	HOXB5 HOXA5
BACH2.p2	1.296	BACH2
ATF6.p2	1.245	ATF6
HSF1,2.p2	1.223	HSF1 HSF2
FOX{D1,D2}.p2	1.202	FOXD2 FOXD1
ATF2.p2	1.193	ATF2
ETS1,2.p2	1.181	ETS2 ETS1
RXRG_dimer.p3	1.169	NR1H2 RXRA PPARG PPARA RXRB RXRG
AGUGCAA	1.169
ACAGUAC	1.133
CRX.p2	1.129	CRX
TFCP2.p2	1.120	TFCP2
NHLH1,2.p2	1.082	NHLH1 NHLH2
NKX2-1,4.p2	1.028	NKX2-1 NKX2-4
AUGGCAC	1.003
MYOD1.p2	1.001	MYOD1
AAGGUGC	0.998
NFATC1..3.p2	0.985	NFATC3 NFATC2 NFATC1
SMAD1..7,9.p2	0.973	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
RFX1..5_RFXANK_RFXAP.p2	0.951	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
ZBTB6.p2	0.934	ZBTB6
ZFP161.p2	0.912	ZFP161
HIF1A.p2	0.872	HIF1A
HIC1.p2	0.856	HIC1
RORA.p2	0.849	RORA
NR3C1.p2	0.847	NR3C1
ONECUT1,2.p2	0.837	ONECUT2 ONECUT1
EHF.p2	0.815	EHF
EP300.p2	0.772	EP300
NFY{A,B,C}.p2	0.761	NFYC NFYB NFYA
MAFB.p2	0.760	MAFB
TFAP2B.p2	0.754	TFAP2B
UAAUGCU	0.751
GFI1B.p2	0.729	GFI1B
AUGUGCC	0.724
VSX1,2.p2	0.722	VSX2 VSX1
FOXN1.p2	0.697	FOXN1
UUGGCAA	0.690
BPTF.p2	0.684	BPTF
ATF4.p2	0.665	ATF4
GCUACAU	0.648
AAUGCCC	0.621
EWSR1-FLI1.p2	0.609	FLI1 EWSR1
AGUGGUU	0.608
GLI1..3.p2	0.594	GLI1 GLI2 GLI3
NR1H4.p2	0.591	NR1H4
CTCF.p2	0.582	CTCF
IKZF2.p2	0.540	IKZF2
FOX{C1,C2}.p2	0.537	FOXC1 FOXC2
TGIF1.p2	0.535	TGIF1
HOX{A6,A7,B6,B7}.p2	0.533	HOXB6 HOXA7 HOXB7 HOXA6
MSX1,2.p2	0.529	MSX1 MSX2
GGACGGA	0.529
ZNF423.p2	0.491	ZNF423
NR6A1.p2	0.482	NR6A1
EOMES.p2	0.479	EOMES
PAX4.p2	0.472	PAX4
HMGA1,2.p2	0.470	HMGA1 HMGA2
CCAGCAU	0.461
ZNF384.p2	0.449	ZNF384
KLF4.p3	0.437	KLF4
CGUACCG	0.427
FOS_FOS{B,L1}_JUN{B,D}.p2	0.425	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
NKX3-2.p2	0.354	NKX3-2
HNF4A_NR2F1,2.p2	0.325	NR2F1 NR2F2 HNF4A
RXRA_VDR{dimer}.p2	0.316	VDR	$logo of RXRA_VDR{dimer}.p2$
UUGGCAC	0.307
EVI1.p2	0.300	EVI1
LEF1_TCF7_TCF7L1,2.p2	0.296	TCF7 TCF7L2 LEF1 TCF7L1
UAAGACU	0.285
GTF2A1,2.p2	0.268	GTF2A1 GTF2A2
GUGCAAA	0.266
RXR{A,B,G}.p2	0.250	RXRA RXRB RXRG
UGCAUAG	0.245
AAGUGCU	0.244
AGCAGCG	0.238
CCUUCAU	0.233
NANOG{mouse}.p2	0.218	NANOG
AUUGCAC	0.214
KLF12.p2	0.204	KLF12
HAND1,2.p2	0.196	HAND1 HAND2
AAAGUGC	0.180
SRY.p2	0.174	SRY
SPZ1.p2	0.172	SPZ1
ACAUUCA	0.172
HOXA9_MEIS1.p2	0.162	MEIS1 HOXA9
STAT5{A,B}.p2	0.159	STAT5B STAT5A
PBX1.p2	0.148	PBX1
PAX5.p2	0.145	PAX5
EN1,2.p2	0.128	EN1 EN2
UAAGACG	0.125
ACUGGCC	0.122
HOX{A4,D4}.p2	0.107	HOXA4 HOXD4
TLX2.p2	0.063	TLX2
PAX3,7.p2	0.045	PAX7 PAX3
GAUUGUC	0.042
HLF.p2	0.035	HLF
PAX8.p2	0.028	PAX8
ACCCGUA	0.013
GAUCAGA	0.006
GZF1.p2	-0.008	GZF1
FOXL1.p2	-0.015	FOXL1
UUGUUCG	-0.015
SOX5.p2	-0.040	SOX5
UGAAAUG	-0.048
AACCGUU	-0.049
FOX{I1,J2}.p2	-0.050	FOXI1 FOXJ2
CAGCAGG	-0.052
UGUGCGU	-0.081
POU1F1.p2	-0.084	POU1F1
AAUCUCU	-0.117
AACCUGG	-0.123
GGAGUGU	-0.135
AAUCUCA	-0.168
AGCAGCA	-0.172
ARID5B.p2	-0.181	ARID5B
TBX4,5.p2	-0.201	TBX5 TBX4
AUGACAC	-0.202
ZNF238.p2	-0.241	ZNF238
UAUUGCU	-0.247
GATA1..3.p2	-0.250	GATA1 GATA2 GATA3
POU3F1..4.p2	-0.269	POU3F1 POU3F3 POU3F2 POU3F4
LMO2.p2	-0.279	LMO2
PATZ1.p2	-0.301	PATZ1
CAGUGCA	-0.309
SOX2.p2	-0.312	SOX2
GAGAACU	-0.312
AIRE.p2	-0.321	AIRE
GAUAUGU	-0.324
AAUACUG	-0.327
ACUGCAU	-0.345
NANOG.p2	-0.358	NANOG
T.p2	-0.361	T
UGACCUA	-0.383
NFKB1_REL_RELA.p2	-0.388	RELA REL NFKB1
NRF1.p2	-0.393	NRF1
PRRX1,2.p2	-0.421	PRRX2 PRRX1
STAT2,4,6.p2	-0.429	STAT2 STAT4 STAT6
CACAGUG	-0.440
GAGAUGA	-0.440
FOX{F1,F2,J1}.p2	-0.442	FOXF2 FOXJ1 FOXF1
EGR1..3.p2	-0.445	EGR3 EGR1 EGR2
CGUGUCU	-0.450
ZEB1.p2	-0.480	ZEB1
YY1.p2	-0.481	YY1
IKZF1.p2	-0.495	IKZF1
GGCAAGA	-0.509
STAT1,3.p3	-0.527	STAT1 STAT3
CEBPA,B_DDIT3.p2	-0.527	DDIT3 CEBPA CEBPB
AHR_ARNT_ARNT2.p2	-0.558	ARNT AHR ARNT2
FOXP3.p2	-0.588	FOXP3
GUCAGUU	-0.593
MZF1.p2	-0.603	MZF1
UGCAUUG	-0.631
AACGGAA	-0.632
ACCCUGU	-0.637
ALX1.p2	-0.655	ALX1
GCUGGUG	-0.670
NKX3-1.p2	-0.674	NKX3-1
MYBL2.p2	-0.681	MYBL2
ELK1,4_GABP{A,B1}.p3	-0.683	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
SOX{8,9,10}.p2	-0.702	SOX9 SOX8 SOX10
FOXD3.p2	-0.711	FOXD3
ZNF148.p2	-0.717	ZNF148
GUAACAG	-0.734
UUGGUCC	-0.795
UCACAUU	-0.799
NFIL3.p2	-0.799	NFIL3
GGCAGUG	-0.816
POU5F1_SOX2{dimer}.p2	-0.825	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
PAX6.p2	-0.836	PAX6
JUN.p2	-0.852	JUN JUND JUNB
TAL1_TCF{3,4,12}.p2	-0.884	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
CUACAGU	-0.924
GFI1.p2	-0.929	GFI1
CUX2.p2	-0.932	CUX2
DMAP1_NCOR{1,2}_SMARC.p2	-0.936	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
AGGUAGU	-0.959
HNF1A.p2	-1.065	HNF1A
PDX1.p2	-1.160	PDX1
ATF5_CREB3.p2	-1.164	ATF5 CREB3
NFE2L2.p2	-1.169	NFE2L2
FOXQ1.p2	-1.190	FOXQ1
RUNX1..3.p2	-1.197	RUNX1 RUNX3 RUNX2
GGAAGAC	-1.232
ELF1,2,4.p2	-1.241	ELF2 ELF1 ELF4
NKX2-2,8.p2	-1.247	NKX2-2 NKX2-8
HMX1.p2	-1.324	HMX1
UCACAGU	-1.397
UCCCUUU	-1.419
NKX2-3_NKX2-5.p2	-1.496	NKX2-5 NKX2-3
AACACUG	-1.547
AUGGCUU	-1.547
SOX17.p2	-1.580	SOX17
UUUUUGC	-1.604
EBF1.p2	-1.682	EBF1
RBPJ.p2	-1.686	RBPJ
UGUGCUU	-1.716
ESRRA.p2	-1.837	ESRRA
LHX3,4.p2	-1.956	LHX3 LHX4
GCAGCAU	-1.966
NFE2L1.p2	-1.977	NFE2L1
ZBTB16.p2	-1.979	ZBTB16
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-2.049	ARNT MAX MYC USF1 BHLHB2 ARNT2
GAGGUAG	-2.069
CUCCCAA	-2.086
REST.p3	-2.088	REST
CCCUGAG	-2.116
ZNF143.p2	-2.152	ZNF143
GATA6.p2	-2.159	GATA6
AACAGUC	-2.190
AGCACCA	-2.208
ADNP_IRX_SIX_ZHX.p2	-2.238	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
ZIC1..3.p2	-2.342	ZIC1 ZIC2 ZIC3
RREB1.p2	-2.343	RREB1
SPI1.p2	-2.357	SPI1
SPIB.p2	-2.496	SPIB
HES1.p2	-2.511	HES1
GGCUCAG	-2.587
bHLH_family.p2	-2.650	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
GTF2I.p2	-2.654	GTF2I
NFE2.p2	-2.715	NFE2
FEV.p2	-2.734	FEV
AGCUGCC	-3.043
IRF1,2,7.p3	-3.088	IRF1 IRF2 IRF7
GUAAACA	-3.173
UCAAGUA	-3.430
PITX1..3.p2	-3.541	PITX2 PITX3 PITX1
TFDP1.p2	-4.585	TFDP1
MYB.p2	-5.865	MYB
E2F1..5.p2	-7.190	E2F4 E2F5 E2F2 E2F1 E2F3

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Sample name: GNF_1_Thyroid

Sorted z-values for every WM.