ISMARA results: GNF_1

Sample name: GNF_1_cerebellum

Sorted Z-values histogram for the sample GNF_1_cerebellum

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
REST.p3	6.028	REST
CAGCAGG	5.502
RREB1.p2	5.264	RREB1
GGCAGUG	5.218
KLF12.p2	4.948	KLF12
HIC1.p2	4.834	HIC1
GTF2I.p2	4.520	GTF2I
GGCUCAG	4.490
JUN.p2	4.425	JUN JUND JUNB
GGAAGAC	4.328
GATA1..3.p2	4.297	GATA1 GATA2 GATA3
MYOD1.p2	4.268	MYOD1
ZFP161.p2	4.233	ZFP161
SPZ1.p2	3.982	SPZ1
CUCCCAA	3.956
GTF2A1,2.p2	3.910	GTF2A1 GTF2A2
TGIF1.p2	3.908	TGIF1
ZIC1..3.p2	3.590	ZIC1 ZIC2 ZIC3
MTF1.p2	3.444	MTF1
RFX1..5_RFXANK_RFXAP.p2	3.379	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
UGCAUAG	3.238
NHLH1,2.p2	3.237	NHLH1 NHLH2
UGUGCUU	3.212
EVI1.p2	3.166	EVI1
HOX{A5,B5}.p2	3.160	HOXB5 HOXA5
MEF2{A,B,C,D}.p2	3.060	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
MZF1.p2	2.907	MZF1
PAX2.p2	2.854	PAX2
HAND1,2.p2	2.801	HAND1 HAND2
SRY.p2	2.789	SRY
GCUGGUG	2.666
CCCUGAG	2.634
AAAGUGC	2.577
FOXP3.p2	2.551	FOXP3
CACAGUG	2.548
AGUGCAA	2.528
HOX{A6,A7,B6,B7}.p2	2.486	HOXB6 HOXA7 HOXB7 HOXA6
TFCP2.p2	2.418	TFCP2
POU5F1.p2	2.411	POU5F1
FOX{I1,J2}.p2	2.223	FOXI1 FOXJ2
SMAD1..7,9.p2	2.202	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
FEV.p2	2.199	FEV
EBF1.p2	2.167	EBF1
ZBTB6.p2	2.159	ZBTB6
FOX{D1,D2}.p2	2.134	FOXD2 FOXD1
AACAGUC	2.114
UAUUGCU	2.106
HNF4A_NR2F1,2.p2	2.099	NR2F1 NR2F2 HNF4A
TAL1_TCF{3,4,12}.p2	2.050	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
ATF2.p2	2.033	ATF2
MAFB.p2	2.014	MAFB
EGR1..3.p2	2.003	EGR3 EGR1 EGR2
HES1.p2	1.988	HES1
ALX1.p2	1.971	ALX1
HBP1_HMGB_SSRP1_UBTF.p2	1.950	HMGB2 HMGB3 SSRP1 UBTF HBP1
CCAGCAU	1.949
SOX{8,9,10}.p2	1.894	SOX9 SOX8 SOX10
UUGGUCC	1.891
AGCAGCA	1.863
NR5A1,2.p2	1.855	NR5A1 NR5A2
EN1,2.p2	1.852	EN1 EN2
ZNF423.p2	1.850	ZNF423
DBP.p2	1.848	DBP
RXR{A,B,G}.p2	1.828	RXRA RXRB RXRG
AUGGCUU	1.823
UUGGCAC	1.803
MAZ.p2	1.757	MAZ
CTCF.p2	1.744	CTCF
SNAI1..3.p2	1.699	SNAI2 SNAI1 SNAI3
NR4A2.p2	1.677	NR4A2
TLX1..3_NFIC{dimer}.p2	1.672	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
AGCUGCC	1.643
NR1H4.p2	1.608	NR1H4
TCF4_dimer.p2	1.585	TCF4
NKX2-3_NKX2-5.p2	1.566	NKX2-5 NKX2-3
AUUGCAC	1.525
TFEB.p2	1.477	TFEB
UCCCUUU	1.434
LMO2.p2	1.397	LMO2
IKZF1.p2	1.359	IKZF1
PATZ1.p2	1.337	PATZ1
NFIX.p2	1.333	NFIX
RUNX1..3.p2	1.327	RUNX1 RUNX3 RUNX2
STAT2,4,6.p2	1.319	STAT2 STAT4 STAT6
EOMES.p2	1.263	EOMES
ACAUUCA	1.218
GAGAUGA	1.195
GUCAGUU	1.166
POU1F1.p2	1.165	POU1F1
PAX4.p2	1.158	PAX4
GATA6.p2	1.158	GATA6
MYFfamily.p2	1.156	MYOD1 MYF6 MYF5 MYOG
FOX{F1,F2,J1}.p2	1.155	FOXF2 FOXJ1 FOXF1
RXRA_VDR{dimer}.p2	1.119	VDR	$logo of RXRA_VDR{dimer}.p2$
HSF1,2.p2	1.117	HSF1 HSF2
ACUGGCC	1.085
AAUACUG	1.082
NKX2-1,4.p2	1.063	NKX2-1 NKX2-4
GGACGGA	1.057
GLI1..3.p2	1.045	GLI1 GLI2 GLI3
RORA.p2	1.037	RORA
SOX2.p2	1.032	SOX2
NR3C1.p2	0.998	NR3C1
AAGUGCU	0.983
GUGCAAA	0.978
FOX{C1,C2}.p2	0.973	FOXC1 FOXC2
GCUACAU	0.947
NFIL3.p2	0.941	NFIL3
AR.p2	0.921	AR
PDX1.p2	0.882	PDX1
LEF1_TCF7_TCF7L1,2.p2	0.867	TCF7 TCF7L2 LEF1 TCF7L1
TFAP2{A,C}.p2	0.856	TFAP2C TFAP2A
CUX2.p2	0.846	CUX2
CUACAGU	0.791
NFE2L1.p2	0.784	NFE2L1
SP1.p2	0.781	SP1
SREBF1,2.p2	0.761	SREBF1 SREBF2
UGUGCGU	0.729
ESRRA.p2	0.711	ESRRA
PAX6.p2	0.704	PAX6
AIRE.p2	0.679	AIRE
AGCACCA	0.677
CGUGUCU	0.671
POU6F1.p2	0.667	POU6F1
HMX1.p2	0.656	HMX1
ONECUT1,2.p2	0.647	ONECUT2 ONECUT1
PAX3,7.p2	0.614	PAX7 PAX3
NANOG{mouse}.p2	0.575	NANOG
GUAAACA	0.564
GAGAACU	0.528
HNF1A.p2	0.508	HNF1A
POU5F1_SOX2{dimer}.p2	0.507	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
GAUCAGA	0.473
AUGACAC	0.466
ACCCUGU	0.461
UAAGACG	0.453
ZEB1.p2	0.449	ZEB1
ZNF238.p2	0.438	ZNF238
NR6A1.p2	0.431	NR6A1
CEBPA,B_DDIT3.p2	0.412	DDIT3 CEBPA CEBPB
AACGGAA	0.409
GZF1.p2	0.395	GZF1
GGCAAGA	0.381
EWSR1-FLI1.p2	0.376	FLI1 EWSR1
ATF6.p2	0.371	ATF6
PRRX1,2.p2	0.364	PRRX2 PRRX1
AGCAGCG	0.325
MSX1,2.p2	0.314	MSX1 MSX2
STAT1,3.p3	0.297	STAT1 STAT3
AGGUAGU	0.291
NANOG.p2	0.291	NANOG
ARID5B.p2	0.279	ARID5B
GGAGUGU	0.223
PAX8.p2	0.212	PAX8
TBP.p2	0.169	TBP
STAT5{A,B}.p2	0.156	STAT5B STAT5A
LHX3,4.p2	0.119	LHX3 LHX4
GFI1.p2	0.101	GFI1
GAUAUGU	0.099
TBX4,5.p2	0.090	TBX5 TBX4
POU2F1..3.p2	0.089	POU2F2 POU2F1 POU2F3
UAAGACU	0.086
HLF.p2	0.080	HLF
GCAGCAU	0.064
ESR1.p2	0.033	ESR1
FOXO1,3,4.p2	0.025	FOXO1 FOXO4 FOXO3
AAUGCCC	0.021
HOXA9_MEIS1.p2	0.017	MEIS1 HOXA9
CDC5L.p2	0.012	CDC5L
IKZF2.p2	-0.013	IKZF2
TEAD1.p2	-0.030	TEAD1 TEAD2 TEAD3 TEAD4
POU3F1..4.p2	-0.040	POU3F1 POU3F3 POU3F2 POU3F4
UGAAAUG	-0.046
ACCCGUA	-0.053
CGUACCG	-0.068
AAUCUCU	-0.080
UGACCUA	-0.084
AAUCUCA	-0.116
SPIB.p2	-0.153	SPIB
AACCGUU	-0.178
FOXL1.p2	-0.220	FOXL1
AUGUGCC	-0.232
ACUGCAU	-0.312
GAUUGUC	-0.344
NKX6-1,2.p2	-0.368	NKX6-1 NKX6-2
CCUUCAU	-0.418
NKX3-2.p2	-0.421	NKX3-2
FOS_FOS{B,L1}_JUN{B,D}.p2	-0.424	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
NKX3-1.p2	-0.439	NKX3-1
AACCUGG	-0.468
CCAGUGU	-0.491
MYBL2.p2	-0.505	MYBL2
UGCAUUG	-0.515
T.p2	-0.519	T
CAGUGCA	-0.523
UUGUUCG	-0.536
VSX1,2.p2	-0.543	VSX2 VSX1
UCACAGU	-0.551
FOSL2.p2	-0.563	FOSL2
GFI1B.p2	-0.614	GFI1B
CRX.p2	-0.623	CRX
CDX1,2,4.p2	-0.626	CDX1 CDX2 CDX4
GAGGUAG	-0.670
ETS1,2.p2	-0.683	ETS2 ETS1
ZBTB16.p2	-0.691	ZBTB16
PRDM1.p3	-0.717	PRDM1
AAGGUGC	-0.732
TFAP2B.p2	-0.750	TFAP2B
GUAGUGU	-0.783
BACH2.p2	-0.842	BACH2
ZNF384.p2	-0.905	ZNF384
FOXQ1.p2	-0.950	FOXQ1
AACACUG	-0.977
PBX1.p2	-1.007	PBX1
ACAGUAC	-1.014
FOXA2.p3	-1.071	FOXA2
PITX1..3.p2	-1.092	PITX2 PITX3 PITX1
NKX2-2,8.p2	-1.145	NKX2-2 NKX2-8
FOXN1.p2	-1.149	FOXN1
HMGA1,2.p2	-1.159	HMGA1 HMGA2
EP300.p2	-1.167	EP300
TLX2.p2	-1.173	TLX2
NFE2.p2	-1.308	NFE2
AUGGCAC	-1.312
UUUUUGC	-1.415
HOX{A4,D4}.p2	-1.435	HOXA4 HOXD4
ADNP_IRX_SIX_ZHX.p2	-1.439	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
AGCUUAU	-1.551
PPARG.p2	-1.576	PPARG
SOX17.p2	-1.627	SOX17
ATF4.p2	-1.661	ATF4
CREB1.p2	-1.690	CREB1
TP53.p2	-1.716	TP53
BPTF.p2	-1.766	BPTF
NFATC1..3.p2	-1.789	NFATC3 NFATC2 NFATC1
UCCAGUU	-1.856
UCACAUU	-1.867
bHLH_family.p2	-1.871	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
NFE2L2.p2	-1.896	NFE2L2
SOX5.p2	-1.987	SOX5
RBPJ.p2	-2.031	RBPJ
UAAUGCU	-2.070
ACAGUAU	-2.129
FOXD3.p2	-2.161	FOXD3
GUAACAG	-2.212
GGAAUGU	-2.235
ZNF143.p2	-2.241	ZNF143
SRF.p3	-2.306	SRF
AGUGGUU	-2.341
UUGGCAA	-2.373
HIF1A.p2	-2.456	HIF1A
DMAP1_NCOR{1,2}_SMARC.p2	-2.549	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
NFKB1_REL_RELA.p2	-2.703	RELA REL NFKB1
TFAP4.p2	-2.712	TFAP4
IRF1,2,7.p3	-2.866	IRF1 IRF2 IRF7
RXRG_dimer.p3	-2.936	NR1H2 RXRA PPARG PPARA RXRB RXRG
AHR_ARNT_ARNT2.p2	-3.010	ARNT AHR ARNT2
NRF1.p2	-3.040	NRF1
ZNF148.p2	-3.052	ZNF148
ATF5_CREB3.p2	-3.156	ATF5 CREB3
SPI1.p2	-3.185	SPI1
CUUUGGU	-3.250
NFY{A,B,C}.p2	-3.260	NFYC NFYB NFYA
XBP1.p3	-3.369	XBP1
UCAAGUA	-3.376
PAX5.p2	-3.712	PAX5
ELK1,4_GABP{A,B1}.p3	-3.807	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
KLF4.p3	-4.185	KLF4
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-5.013	ARNT MAX MYC USF1 BHLHB2 ARNT2
YY1.p2	-5.045	YY1
E2F1..5.p2	-5.544	E2F4 E2F5 E2F2 E2F1 E2F3
MYB.p2	-5.596	MYB
EHF.p2	-5.816	EHF
TFDP1.p2	-5.941	TFDP1
ELF1,2,4.p2	-6.201	ELF2 ELF1 ELF4
AAGGCAC	-6.382

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Sample name: GNF_1_cerebellum

Sorted z-values for every WM.