ISMARA results: GNF_1

Sample name: GNF_1_trachea

Sorted Z-values histogram for the sample GNF_1_trachea

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
TBP.p2	9.807	TBP
POU2F1..3.p2	7.910	POU2F2 POU2F1 POU2F3
FOSL2.p2	5.978	FOSL2
SNAI1..3.p2	5.497	SNAI2 SNAI1 SNAI3
ATF6.p2	5.368	ATF6
MYFfamily.p2	5.343	MYOD1 MYF6 MYF5 MYOG
SRF.p3	5.068	SRF
AR.p2	5.025	AR
FOXA2.p3	4.843	FOXA2
POU5F1.p2	4.162	POU5F1
POU5F1_SOX2{dimer}.p2	4.078	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
GUAGUGU	3.812
NFKB1_REL_RELA.p2	3.638	RELA REL NFKB1
PPARG.p2	3.294	PPARG
MZF1.p2	3.281	MZF1
NFATC1..3.p2	3.279	NFATC3 NFATC2 NFATC1
XBP1.p3	3.274	XBP1
FOX{C1,C2}.p2	3.200	FOXC1 FOXC2
TCF4_dimer.p2	3.152	TCF4
HBP1_HMGB_SSRP1_UBTF.p2	2.931	HMGB2 HMGB3 SSRP1 UBTF HBP1
POU1F1.p2	2.915	POU1F1
EN1,2.p2	2.877	EN1 EN2
POU6F1.p2	2.703	POU6F1
TFAP2{A,C}.p2	2.674	TFAP2C TFAP2A
NR6A1.p2	2.623	NR6A1
TLX1..3_NFIC{dimer}.p2	2.593	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
TEAD1.p2	2.577	TEAD1 TEAD2 TEAD3 TEAD4
EGR1..3.p2	2.514	EGR3 EGR1 EGR2
HAND1,2.p2	2.348	HAND1 HAND2
ESR1.p2	2.313	ESR1
TBX4,5.p2	2.309	TBX5 TBX4
NKX3-2.p2	2.202	NKX3-2
MSX1,2.p2	2.174	MSX1 MSX2
EOMES.p2	2.171	EOMES
GTF2A1,2.p2	2.047	GTF2A1 GTF2A2
TFCP2.p2	2.002	TFCP2
NR1H4.p2	1.987	NR1H4
ATF2.p2	1.968	ATF2
FOX{D1,D2}.p2	1.928	FOXD2 FOXD1
SPZ1.p2	1.864	SPZ1
UUUUUGC	1.738
FOXO1,3,4.p2	1.693	FOXO1 FOXO4 FOXO3
AAAGUGC	1.678
NFIX.p2	1.647	NFIX
SMAD1..7,9.p2	1.643	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
TFEB.p2	1.559	TFEB
STAT1,3.p3	1.554	STAT1 STAT3
NR5A1,2.p2	1.470	NR5A1 NR5A2
CRX.p2	1.457	CRX
AIRE.p2	1.427	AIRE
NANOG{mouse}.p2	1.385	NANOG
CUUUGGU	1.380
UUGUUCG	1.343
TGIF1.p2	1.327	TGIF1
GUGCAAA	1.319
AAGUGCU	1.310
STAT2,4,6.p2	1.301	STAT2 STAT4 STAT6
MEF2{A,B,C,D}.p2	1.300	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
CDC5L.p2	1.290	CDC5L
HMGA1,2.p2	1.275	HMGA1 HMGA2
ZEB1.p2	1.272	ZEB1
GAUCAGA	1.269
GAGAUGA	1.247
ZBTB6.p2	1.247	ZBTB6
MTF1.p2	1.214	MTF1
FOXL1.p2	1.213	FOXL1
AUUGCAC	1.188
HNF1A.p2	1.172	HNF1A
ADNP_IRX_SIX_ZHX.p2	1.171	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
FOX{F1,F2,J1}.p2	1.159	FOXF2 FOXJ1 FOXF1
DBP.p2	1.140	DBP
AAGGCAC	1.136
ETS1,2.p2	1.128	ETS2 ETS1
CEBPA,B_DDIT3.p2	1.113	DDIT3 CEBPA CEBPB
UAAUGCU	1.104
UCCCUUU	1.100
T.p2	1.084	T
ZIC1..3.p2	1.081	ZIC1 ZIC2 ZIC3
IRF1,2,7.p3	1.062	IRF1 IRF2 IRF7
KLF12.p2	1.061	KLF12
UGUGCUU	1.022
HSF1,2.p2	1.009	HSF1 HSF2
FOXP3.p2	0.997	FOXP3
ALX1.p2	0.995	ALX1
STAT5{A,B}.p2	0.946	STAT5B STAT5A
ZNF238.p2	0.912	ZNF238
GATA6.p2	0.904	GATA6
IKZF2.p2	0.895	IKZF2
UGAAAUG	0.886
NFIL3.p2	0.881	NFIL3
NR3C1.p2	0.877	NR3C1
AGCUUAU	0.872
UCACAGU	0.866
GAGAACU	0.840
CCAGCAU	0.824
GGAAGAC	0.822
FEV.p2	0.813	FEV
PATZ1.p2	0.782	PATZ1
CCCUGAG	0.781
VSX1,2.p2	0.765	VSX2 VSX1
SOX5.p2	0.762	SOX5
AAGGUGC	0.749
CCAGUGU	0.743
PRDM1.p3	0.739	PRDM1
FOS_FOS{B,L1}_JUN{B,D}.p2	0.729	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
HIC1.p2	0.725	HIC1
EVI1.p2	0.712	EVI1
RXRG_dimer.p3	0.702	NR1H2 RXRA PPARG PPARA RXRB RXRG
ONECUT1,2.p2	0.674	ONECUT2 ONECUT1
UGCAUAG	0.634
MYOD1.p2	0.579	MYOD1
MAZ.p2	0.575	MAZ
AHR_ARNT_ARNT2.p2	0.567	ARNT AHR ARNT2
CAGCAGG	0.534
AUGUGCC	0.520
EWSR1-FLI1.p2	0.516	FLI1 EWSR1
GAGGUAG	0.512
AAUGCCC	0.499
CACAGUG	0.490
TLX2.p2	0.448	TLX2
AAUCUCU	0.411
NKX6-1,2.p2	0.404	NKX6-1 NKX6-2
TP53.p2	0.393	TP53
BACH2.p2	0.375	BACH2
AACAGUC	0.360
UCCAGUU	0.349
LEF1_TCF7_TCF7L1,2.p2	0.333	TCF7 TCF7L2 LEF1 TCF7L1
GTF2I.p2	0.314	GTF2I
GAUUGUC	0.309
DMAP1_NCOR{1,2}_SMARC.p2	0.287	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
GGACGGA	0.272
GCUACAU	0.263
RREB1.p2	0.236	RREB1
SREBF1,2.p2	0.234	SREBF1 SREBF2
HOX{A5,B5}.p2	0.225	HOXB5 HOXA5
ZBTB16.p2	0.222	ZBTB16
PAX2.p2	0.220	PAX2
UUGGCAA	0.211
ACUGCAU	0.210
AGCAGCG	0.205
CGUACCG	0.204
EP300.p2	0.171	EP300
CGUGUCU	0.148
PAX6.p2	0.136	PAX6
GFI1B.p2	0.134	GFI1B
TFAP4.p2	0.107	TFAP4
FOX{I1,J2}.p2	0.106	FOXI1 FOXJ2
NKX2-1,4.p2	0.094	NKX2-1 NKX2-4
PAX8.p2	0.072	PAX8
ACAUUCA	0.070
SOX{8,9,10}.p2	0.059	SOX9 SOX8 SOX10
TAL1_TCF{3,4,12}.p2	0.058	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
RFX1..5_RFXANK_RFXAP.p2	0.053	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
ACAGUAU	0.053
UUGGCAC	0.048
CUX2.p2	0.030	CUX2
GGAGUGU	0.007
UUGGUCC	0.004
ACUGGCC	0.003
CUACAGU	0.003
GGCUCAG	-0.012
ACCCGUA	-0.022
ATF5_CREB3.p2	-0.044	ATF5 CREB3
UAAGACG	-0.050
AGCAGCA	-0.067
UGACCUA	-0.070
PAX3,7.p2	-0.070	PAX7 PAX3
CREB1.p2	-0.076	CREB1
ZNF423.p2	-0.080	ZNF423
AUGGCUU	-0.091
CCUUCAU	-0.092
CTCF.p2	-0.108	CTCF
AACCGUU	-0.121
AACCUGG	-0.133
UGUGCGU	-0.143
MYBL2.p2	-0.148	MYBL2
GUAACAG	-0.183
AAUCUCA	-0.195
CDX1,2,4.p2	-0.203	CDX1 CDX2 CDX4
UAAGACU	-0.214
GUAAACA	-0.223
SPI1.p2	-0.225	SPI1
RORA.p2	-0.229	RORA
PAX4.p2	-0.272	PAX4
ACAGUAC	-0.277
GGCAAGA	-0.293
LMO2.p2	-0.295	LMO2
GGCAGUG	-0.312
GAUAUGU	-0.316
AUGACAC	-0.318
RUNX1..3.p2	-0.333	RUNX1 RUNX3 RUNX2
RXRA_VDR{dimer}.p2	-0.334	VDR	$logo of RXRA_VDR{dimer}.p2$
ARID5B.p2	-0.384	ARID5B
SOX17.p2	-0.389	SOX17
AGUGCAA	-0.408
NR4A2.p2	-0.447	NR4A2
AUGGCAC	-0.463
UGCAUUG	-0.477
UAUUGCU	-0.499
GZF1.p2	-0.519	GZF1
GATA1..3.p2	-0.534	GATA1 GATA2 GATA3
LHX3,4.p2	-0.536	LHX3 LHX4
UCAAGUA	-0.566
FOXN1.p2	-0.580	FOXN1
REST.p3	-0.610	REST
ZFP161.p2	-0.621	ZFP161
CUCCCAA	-0.638
PDX1.p2	-0.658	PDX1
AACGGAA	-0.684
NFE2L2.p2	-0.728	NFE2L2
GUCAGUU	-0.731
ACCCUGU	-0.743
NHLH1,2.p2	-0.752	NHLH1 NHLH2
EBF1.p2	-0.759	EBF1
NANOG.p2	-0.764	NANOG
AGGUAGU	-0.786
HOXA9_MEIS1.p2	-0.797	MEIS1 HOXA9
AAUACUG	-0.807
ZNF148.p2	-0.815	ZNF148
UCACAUU	-0.821
ZNF384.p2	-0.885	ZNF384
GLI1..3.p2	-0.895	GLI1 GLI2 GLI3
RXR{A,B,G}.p2	-0.896	RXRA RXRB RXRG
SRY.p2	-0.972	SRY
PAX5.p2	-0.985	PAX5
AGCUGCC	-0.988
IKZF1.p2	-0.998	IKZF1
AGCACCA	-1.012
PRRX1,2.p2	-1.014	PRRX2 PRRX1
NKX2-3_NKX2-5.p2	-1.016	NKX2-5 NKX2-3
RBPJ.p2	-1.017	RBPJ
AGUGGUU	-1.057
POU3F1..4.p2	-1.067	POU3F1 POU3F3 POU3F2 POU3F4
GGAAUGU	-1.093
AACACUG	-1.238
NFE2L1.p2	-1.275	NFE2L1
FOXD3.p2	-1.325	FOXD3
HOX{A6,A7,B6,B7}.p2	-1.349	HOXB6 HOXA7 HOXB7 HOXA6
TFDP1.p2	-1.357	TFDP1
GCAGCAU	-1.373
HLF.p2	-1.386	HLF
HNF4A_NR2F1,2.p2	-1.404	NR2F1 NR2F2 HNF4A
NKX3-1.p2	-1.416	NKX3-1
MAFB.p2	-1.521	MAFB
SOX2.p2	-1.555	SOX2
ELF1,2,4.p2	-1.632	ELF2 ELF1 ELF4
HMX1.p2	-1.653	HMX1
NFE2.p2	-1.653	NFE2
GFI1.p2	-1.690	GFI1
NKX2-2,8.p2	-1.729	NKX2-2 NKX2-8
CAGUGCA	-1.743
FOXQ1.p2	-1.843	FOXQ1
PBX1.p2	-1.897	PBX1
BPTF.p2	-2.112	BPTF
HES1.p2	-2.152	HES1
GCUGGUG	-2.225
JUN.p2	-2.368	JUN JUND JUNB
KLF4.p3	-2.467	KLF4
HOX{A4,D4}.p2	-2.497	HOXA4 HOXD4
ATF4.p2	-2.765	ATF4
SPIB.p2	-2.873	SPIB
HIF1A.p2	-2.916	HIF1A
SP1.p2	-2.968	SP1
bHLH_family.p2	-3.101	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
TFAP2B.p2	-3.310	TFAP2B
EHF.p2	-3.356	EHF
ESRRA.p2	-4.022	ESRRA
NFY{A,B,C}.p2	-4.048	NFYC NFYB NFYA
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-4.063	ARNT MAX MYC USF1 BHLHB2 ARNT2
MYB.p2	-5.050	MYB
PITX1..3.p2	-5.476	PITX2 PITX3 PITX1
ELK1,4_GABP{A,B1}.p3	-7.425	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
YY1.p2	-8.764	YY1
E2F1..5.p2	-9.270	E2F4 E2F5 E2F2 E2F1 E2F3
ZNF143.p2	-10.164	ZNF143
NRF1.p2	-11.259	NRF1

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Sample name: GNF_1_trachea

Sorted z-values for every WM.