ISMARA results: GNF_2

Sample name: GNF_2_Liver

Sorted Z-values histogram for the sample GNF_2_Liver

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
HNF1A.p2	13.482	HNF1A
HNF4A_NR2F1,2.p2	12.419	NR2F1 NR2F2 HNF4A
TBP.p2	5.640	TBP
FOXA2.p3	5.408	FOXA2
NR5A1,2.p2	4.804	NR5A1 NR5A2
MYFfamily.p2	4.206	MYOD1 MYF6 MYF5 MYOG
SMAD1..7,9.p2	4.079	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
HLF.p2	4.031	HLF
FOX{F1,F2,J1}.p2	3.686	FOXF2 FOXJ1 FOXF1
NR1H4.p2	3.661	NR1H4
TLX1..3_NFIC{dimer}.p2	3.646	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
HAND1,2.p2	3.632	HAND1 HAND2
FOX{C1,C2}.p2	3.506	FOXC1 FOXC2
RREB1.p2	3.496	RREB1
POU1F1.p2	3.391	POU1F1
GATA6.p2	3.366	GATA6
NFIL3.p2	3.163	NFIL3
MTF1.p2	3.137	MTF1
ADNP_IRX_SIX_ZHX.p2	3.106	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
CEBPA,B_DDIT3.p2	2.959	DDIT3 CEBPA CEBPB
GTF2A1,2.p2	2.942	GTF2A1 GTF2A2
STAT2,4,6.p2	2.771	STAT2 STAT4 STAT6
CCCUGAG	2.672
NR4A2.p2	2.610	NR4A2
RUNX1..3.p2	2.576	RUNX1 RUNX3 RUNX2
PATZ1.p2	2.523	PATZ1
CAGCAGG	2.515
TFCP2.p2	2.509	TFCP2
GAGGUAG	2.429
FOSL2.p2	2.416	FOSL2
EP300.p2	2.400	EP300
EN1,2.p2	2.334	EN1 EN2
MAZ.p2	2.306	MAZ
FOXP3.p2	2.290	FOXP3
DBP.p2	2.245	DBP
HIC1.p2	2.235	HIC1
MSX1,2.p2	2.216	MSX1 MSX2
MYOD1.p2	2.210	MYOD1
AIRE.p2	2.203	AIRE
ETS1,2.p2	2.187	ETS2 ETS1
REST.p3	2.180	REST
HOX{A5,B5}.p2	2.120	HOXB5 HOXA5
CACAGUG	1.978
TGIF1.p2	1.900	TGIF1
SP1.p2	1.854	SP1
RXRA_VDR{dimer}.p2	1.853	VDR	$logo of RXRA_VDR{dimer}.p2$
TCF4_dimer.p2	1.839	TCF4
ZNF423.p2	1.816	ZNF423
AR.p2	1.812	AR
PPARG.p2	1.754	PPARG
bHLH_family.p2	1.736	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
IKZF1.p2	1.706	IKZF1
POU5F1_SOX2{dimer}.p2	1.688	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
NFIX.p2	1.673	NFIX
KLF12.p2	1.656	KLF12
NHLH1,2.p2	1.431	NHLH1 NHLH2
POU2F1..3.p2	1.431	POU2F2 POU2F1 POU2F3
CTCF.p2	1.379	CTCF
ZEB1.p2	1.370	ZEB1
GAGAUGA	1.328
NR6A1.p2	1.274	NR6A1
GGCAGUG	1.208
ACCCUGU	1.202
GGACGGA	1.173
AGCAGCG	1.134
CUUUGGU	1.081
ONECUT1,2.p2	1.074	ONECUT2 ONECUT1
ESR1.p2	1.073	ESR1
NANOG.p2	1.071	NANOG
POU5F1.p2	1.052	POU5F1
NANOG{mouse}.p2	1.046	NANOG
NKX2-3_NKX2-5.p2	1.046	NKX2-5 NKX2-3
RXR{A,B,G}.p2	1.020	RXRA RXRB RXRG
GGCUCAG	0.977
EVI1.p2	0.971	EVI1
POU6F1.p2	0.960	POU6F1
AAGGCAC	0.896
CRX.p2	0.896	CRX
ZBTB6.p2	0.895	ZBTB6
UGCAUAG	0.874
FOXL1.p2	0.871	FOXL1
GUAGUGU	0.824
UCCCUUU	0.821
ZNF238.p2	0.804	ZNF238
AGCAGCA	0.788
AAGUGCU	0.742
GATA1..3.p2	0.738	GATA1 GATA2 GATA3
AGUGCAA	0.734
NFKB1_REL_RELA.p2	0.725	RELA REL NFKB1
GAUUGUC	0.712
RORA.p2	0.710	RORA
RXRG_dimer.p3	0.652	NR1H2 RXRA PPARG PPARA RXRB RXRG
SNAI1..3.p2	0.609	SNAI2 SNAI1 SNAI3
POU3F1..4.p2	0.606	POU3F1 POU3F3 POU3F2 POU3F4
STAT1,3.p3	0.593	STAT1 STAT3
PBX1.p2	0.580	PBX1
TLX2.p2	0.570	TLX2
UAUUGCU	0.568
IRF1,2,7.p3	0.564	IRF1 IRF2 IRF7
CDC5L.p2	0.563	CDC5L
LEF1_TCF7_TCF7L1,2.p2	0.561	TCF7 TCF7L2 LEF1 TCF7L1
CUX2.p2	0.536	CUX2
GGCAAGA	0.517
SRY.p2	0.514	SRY
AACAGUC	0.512
HMGA1,2.p2	0.485	HMGA1 HMGA2
PITX1..3.p2	0.457	PITX2 PITX3 PITX1
AUGGCUU	0.455
UGUGCGU	0.442
GFI1B.p2	0.441	GFI1B
PRDM1.p3	0.424	PRDM1
GTF2I.p2	0.416	GTF2I
GLI1..3.p2	0.406	GLI1 GLI2 GLI3
AUGUGCC	0.373
HSF1,2.p2	0.361	HSF1 HSF2
AACGGAA	0.347
NFE2.p2	0.343	NFE2
TFAP2{A,C}.p2	0.337	TFAP2C TFAP2A
UUGUUCG	0.304
FEV.p2	0.301	FEV
AAGGUGC	0.298
NFY{A,B,C}.p2	0.278	NFYC NFYB NFYA
ACUGGCC	0.272
FOX{I1,J2}.p2	0.271	FOXI1 FOXJ2
GAUCAGA	0.262
NFE2L1.p2	0.257	NFE2L1
HIF1A.p2	0.217	HIF1A
TP53.p2	0.212	TP53
AAUCUCU	0.201
AGCUUAU	0.194
PAX6.p2	0.180	PAX6
CGUACCG	0.165
VSX1,2.p2	0.165	VSX2 VSX1
TBX4,5.p2	0.143	TBX5 TBX4
CDX1,2,4.p2	0.138	CDX1 CDX2 CDX4
SREBF1,2.p2	0.100	SREBF1 SREBF2
XBP1.p3	0.099	XBP1
GAUAUGU	0.096
NKX3-1.p2	0.087	NKX3-1
AAUCUCA	0.086
AUGGCAC	0.078
HOX{A4,D4}.p2	0.077	HOXA4 HOXD4
PAX3,7.p2	0.068	PAX7 PAX3
HOXA9_MEIS1.p2	0.054	MEIS1 HOXA9
ATF6.p2	0.030	ATF6
UUGGCAC	0.004
ACCCGUA	-0.024
JUN.p2	-0.027	JUN JUND JUNB
EBF1.p2	-0.032	EBF1
T.p2	-0.032	T
ZNF148.p2	-0.045	ZNF148
AUGACAC	-0.051
EOMES.p2	-0.059	EOMES
CGUGUCU	-0.071
AAUGCCC	-0.078
CCAGCAU	-0.087
BPTF.p2	-0.098	BPTF
UAAUGCU	-0.101
DMAP1_NCOR{1,2}_SMARC.p2	-0.133	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
NKX2-1,4.p2	-0.145	NKX2-1 NKX2-4
FOXQ1.p2	-0.162	FOXQ1
MEF2{A,B,C,D}.p2	-0.162	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
ACAGUAU	-0.180
GGAAGAC	-0.183
GUAACAG	-0.203
PAX8.p2	-0.209	PAX8
PDX1.p2	-0.267	PDX1
UGCAUUG	-0.303
GUAAACA	-0.314
CCUUCAU	-0.335
GCAGCAU	-0.362
HBP1_HMGB_SSRP1_UBTF.p2	-0.400	HMGB2 HMGB3 SSRP1 UBTF HBP1
GAGAACU	-0.413
UGACCUA	-0.456
AHR_ARNT_ARNT2.p2	-0.472	ARNT AHR ARNT2
ZIC1..3.p2	-0.472	ZIC1 ZIC2 ZIC3
SOX17.p2	-0.480	SOX17
NR3C1.p2	-0.496	NR3C1
AAAGUGC	-0.501
UAAGACU	-0.502
FOX{D1,D2}.p2	-0.509	FOXD2 FOXD1
TFEB.p2	-0.509	TFEB
AACCUGG	-0.517
AACCGUU	-0.520
TFAP4.p2	-0.556	TFAP4
AGGUAGU	-0.559
SOX5.p2	-0.567	SOX5
ATF2.p2	-0.625	ATF2
NKX6-1,2.p2	-0.626	NKX6-1 NKX6-2
GGAGUGU	-0.636
LMO2.p2	-0.670	LMO2
ZFP161.p2	-0.686	ZFP161
ACUGCAU	-0.690
ATF4.p2	-0.692	ATF4
PAX2.p2	-0.697	PAX2
TFAP2B.p2	-0.698	TFAP2B
ACAGUAC	-0.740
GZF1.p2	-0.741	GZF1
TAL1_TCF{3,4,12}.p2	-0.742	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
HOX{A6,A7,B6,B7}.p2	-0.756	HOXB6 HOXA7 HOXB7 HOXA6
GCUACAU	-0.788
CCAGUGU	-0.809
LHX3,4.p2	-0.822	LHX3 LHX4
STAT5{A,B}.p2	-0.826	STAT5B STAT5A
PAX4.p2	-0.833	PAX4
AGCUGCC	-0.838
ARID5B.p2	-0.845	ARID5B
AGCACCA	-0.846
UGUGCUU	-0.859
UCCAGUU	-0.865
SPIB.p2	-0.871	SPIB
HMX1.p2	-0.888	HMX1
SRF.p3	-0.895	SRF
GUGCAAA	-0.900
RBPJ.p2	-0.914	RBPJ
SPZ1.p2	-0.927	SPZ1
UUGGCAA	-0.928
NFATC1..3.p2	-0.960	NFATC3 NFATC2 NFATC1
UUGGUCC	-0.966
MYBL2.p2	-0.985	MYBL2
EWSR1-FLI1.p2	-0.989	FLI1 EWSR1
GCUGGUG	-1.031
RFX1..5_RFXANK_RFXAP.p2	-1.050	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
GUCAGUU	-1.075
ESRRA.p2	-1.136	ESRRA
HES1.p2	-1.145	HES1
AUUGCAC	-1.158
FOS_FOS{B,L1}_JUN{B,D}.p2	-1.164	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
UAAGACG	-1.171
UCACAGU	-1.349
AACACUG	-1.355
CUACAGU	-1.359
ALX1.p2	-1.426	ALX1
ZNF384.p2	-1.435	ZNF384
TEAD1.p2	-1.507	TEAD1 TEAD2 TEAD3 TEAD4
UGAAAUG	-1.552
BACH2.p2	-1.619	BACH2
FOXO1,3,4.p2	-1.672	FOXO1 FOXO4 FOXO3
NFE2L2.p2	-1.714	NFE2L2
AGUGGUU	-1.764
AAUACUG	-1.766
NKX3-2.p2	-1.831	NKX3-2
UCACAUU	-1.840
SOX2.p2	-1.982	SOX2
PAX5.p2	-1.989	PAX5
FOXN1.p2	-1.993	FOXN1
CREB1.p2	-2.098	CREB1
IKZF2.p2	-2.117	IKZF2
ZNF143.p2	-2.212	ZNF143
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-2.397	ARNT MAX MYC USF1 BHLHB2 ARNT2
EGR1..3.p2	-2.457	EGR3 EGR1 EGR2
CAGUGCA	-2.596
ACAUUCA	-2.650
FOXD3.p2	-2.665	FOXD3
UCAAGUA	-2.723
SOX{8,9,10}.p2	-2.737	SOX9 SOX8 SOX10
SPI1.p2	-2.770	SPI1
GFI1.p2	-2.883	GFI1
KLF4.p3	-3.048	KLF4
EHF.p2	-3.249	EHF
ZBTB16.p2	-3.513	ZBTB16
CUCCCAA	-3.636
ELF1,2,4.p2	-3.746	ELF2 ELF1 ELF4
ATF5_CREB3.p2	-3.768	ATF5 CREB3
ELK1,4_GABP{A,B1}.p3	-3.769	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
UUUUUGC	-3.957
NKX2-2,8.p2	-3.969	NKX2-2 NKX2-8
GGAAUGU	-4.474
YY1.p2	-4.651	YY1
PRRX1,2.p2	-4.743	PRRX2 PRRX1
NRF1.p2	-4.748	NRF1
MAFB.p2	-4.783	MAFB
MZF1.p2	-5.499	MZF1
E2F1..5.p2	-5.711	E2F4 E2F5 E2F2 E2F1 E2F3
MYB.p2	-6.154	MYB
TFDP1.p2	-8.264	TFDP1

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Sample name: GNF_2_Liver

Sorted z-values for every WM.