ISMARA results: GNF_2

Sample name: GNF_2_Pons

Sorted Z-values histogram for the sample GNF_2_Pons

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
CUCCCAA	9.525
REST.p3	6.626	REST
RFX1..5_RFXANK_RFXAP.p2	6.417	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
RREB1.p2	6.036	RREB1
KLF12.p2	5.667	KLF12
JUN.p2	4.855	JUN JUND JUNB
MYOD1.p2	4.844	MYOD1
MTF1.p2	4.775	MTF1
ZIC1..3.p2	4.652	ZIC1 ZIC2 ZIC3
GTF2I.p2	4.517	GTF2I
SMAD1..7,9.p2	4.212	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
UGUGCUU	4.178
UUUUUGC	4.155
GGCUCAG	4.135
TGIF1.p2	4.096	TGIF1
HIC1.p2	3.859	HIC1
EVI1.p2	3.673	EVI1
GGCAGUG	3.664
CAGCAGG	3.327
GTF2A1,2.p2	3.252	GTF2A1 GTF2A2
TLX1..3_NFIC{dimer}.p2	3.245	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
NKX2-3_NKX2-5.p2	3.211	NKX2-5 NKX2-3
EGR1..3.p2	3.118	EGR3 EGR1 EGR2
NHLH1,2.p2	3.108	NHLH1 NHLH2
TAL1_TCF{3,4,12}.p2	3.104	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
POU5F1.p2	3.045	POU5F1
TCF4_dimer.p2	3.031	TCF4
FEV.p2	2.833	FEV
UGCAUAG	2.761
UCCCUUU	2.700
GATA1..3.p2	2.688	GATA1 GATA2 GATA3
EBF1.p2	2.680	EBF1
NR1H4.p2	2.662	NR1H4
MZF1.p2	2.614	MZF1
ALX1.p2	2.584	ALX1
TBX4,5.p2	2.506	TBX5 TBX4
FOXP3.p2	2.456	FOXP3
TFCP2.p2	2.443	TFCP2
HOX{A6,A7,B6,B7}.p2	2.191	HOXB6 HOXA7 HOXB7 HOXA6
STAT1,3.p3	2.170	STAT1 STAT3
NANOG{mouse}.p2	2.157	NANOG
RUNX1..3.p2	2.081	RUNX1 RUNX3 RUNX2
STAT2,4,6.p2	2.076	STAT2 STAT4 STAT6
FOX{I1,J2}.p2	2.076	FOXI1 FOXJ2
CCAGCAU	2.063
MEF2{A,B,C,D}.p2	2.044	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
LMO2.p2	2.041	LMO2
HAND1,2.p2	2.017	HAND1 HAND2
MYFfamily.p2	2.004	MYOD1 MYF6 MYF5 MYOG
HNF4A_NR2F1,2.p2	1.989	NR2F1 NR2F2 HNF4A
LEF1_TCF7_TCF7L1,2.p2	1.984	TCF7 TCF7L2 LEF1 TCF7L1
AUGGCUU	1.927
GGAAGAC	1.898
EN1,2.p2	1.891	EN1 EN2
HOX{A5,B5}.p2	1.836	HOXB5 HOXA5
DBP.p2	1.779	DBP
HMX1.p2	1.751	HMX1
AAAGUGC	1.732
PAX2.p2	1.726	PAX2
RXR{A,B,G}.p2	1.646	RXRA RXRB RXRG
GAGAACU	1.633
IKZF2.p2	1.547	IKZF2
SRY.p2	1.530	SRY
UUGGUCC	1.499
POU1F1.p2	1.491	POU1F1
SOX{8,9,10}.p2	1.489	SOX9 SOX8 SOX10
GAGGUAG	1.475
NR3C1.p2	1.438	NR3C1
CUACAGU	1.422
GGCAAGA	1.411
GAGAUGA	1.394
CACAGUG	1.340
STAT5{A,B}.p2	1.313	STAT5B STAT5A
GUAAACA	1.276
GATA6.p2	1.273	GATA6
FOS_FOS{B,L1}_JUN{B,D}.p2	1.259	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
MAZ.p2	1.218	MAZ
HBP1_HMGB_SSRP1_UBTF.p2	1.213	HMGB2 HMGB3 SSRP1 UBTF HBP1
ZNF423.p2	1.182	ZNF423
GLI1..3.p2	1.139	GLI1 GLI2 GLI3
NANOG.p2	1.133	NANOG
CDC5L.p2	1.129	CDC5L
GAUCAGA	1.127
CCCUGAG	1.103
UGAAAUG	1.052
NKX2-1,4.p2	1.049	NKX2-1 NKX2-4
AGCUGCC	1.018
NR4A2.p2	1.016	NR4A2
POU2F1..3.p2	0.942	POU2F2 POU2F1 POU2F3
ZEB1.p2	0.937	ZEB1
RORA.p2	0.924	RORA
HNF1A.p2	0.915	HNF1A
FOX{C1,C2}.p2	0.904	FOXC1 FOXC2
SPZ1.p2	0.887	SPZ1
AUUGCAC	0.883
UCACAGU	0.883
UUGGCAC	0.877
FOX{F1,F2,J1}.p2	0.861	FOXF2 FOXJ1 FOXF1
AGCAGCA	0.859
GFI1.p2	0.858	GFI1
HLF.p2	0.839	HLF
EWSR1-FLI1.p2	0.826	FLI1 EWSR1
GCUGGUG	0.825
UAAGACG	0.824
CGUGUCU	0.817
GUCAGUU	0.814
SNAI1..3.p2	0.787	SNAI2 SNAI1 SNAI3
IKZF1.p2	0.769	IKZF1
AIRE.p2	0.752	AIRE
POU5F1_SOX2{dimer}.p2	0.726	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
NFIX.p2	0.702	NFIX
AAGUGCU	0.689
UUGUUCG	0.671
PAX3,7.p2	0.660	PAX7 PAX3
PAX6.p2	0.658	PAX6
UAUUGCU	0.658
ZBTB6.p2	0.632	ZBTB6
ETS1,2.p2	0.627	ETS2 ETS1
ACUGGCC	0.606
ACCCUGU	0.596
NFIL3.p2	0.593	NFIL3
ZFP161.p2	0.592	ZFP161
ATF2.p2	0.580	ATF2
TEAD1.p2	0.573	TEAD1 TEAD2 TEAD3 TEAD4
UGUGCGU	0.552
AAGGUGC	0.551
PDX1.p2	0.547	PDX1
TLX2.p2	0.539	TLX2
AAUACUG	0.521
PAX4.p2	0.500	PAX4
ACUGCAU	0.465
RBPJ.p2	0.447	RBPJ
PRRX1,2.p2	0.428	PRRX2 PRRX1
GZF1.p2	0.422	GZF1
NR5A1,2.p2	0.418	NR5A1 NR5A2
AGUGCAA	0.408
AUGACAC	0.359
GCAGCAU	0.349
LHX3,4.p2	0.347	LHX3 LHX4
TFAP2{A,C}.p2	0.344	TFAP2C TFAP2A
NKX3-1.p2	0.338	NKX3-1
CUX2.p2	0.302	CUX2
ZNF238.p2	0.295	ZNF238
UGCAUUG	0.292
AGGUAGU	0.285
PAX8.p2	0.261	PAX8
UAAGACU	0.237
AACAGUC	0.230
EOMES.p2	0.223	EOMES
TFEB.p2	0.213	TFEB
ACAUUCA	0.205
FOXO1,3,4.p2	0.194	FOXO1 FOXO4 FOXO3
AAUCUCU	0.183
MSX1,2.p2	0.180	MSX1 MSX2
FOXL1.p2	0.167	FOXL1
FOX{D1,D2}.p2	0.166	FOXD2 FOXD1
MYBL2.p2	0.149	MYBL2
GGACGGA	0.114
CAGUGCA	0.096
AACGGAA	0.090
HMGA1,2.p2	0.081	HMGA1 HMGA2
POU3F1..4.p2	0.080	POU3F1 POU3F3 POU3F2 POU3F4
ZNF384.p2	0.066	ZNF384
CGUACCG	0.061
AR.p2	0.027	AR
RXRA_VDR{dimer}.p2	0.024	VDR	$logo of RXRA_VDR{dimer}.p2$
POU6F1.p2	0.020	POU6F1
GUGCAAA	0.009
AAUCUCA	0.001
SP1.p2	-0.021	SP1
ACCCGUA	-0.068
NR6A1.p2	-0.070	NR6A1
NFATC1..3.p2	-0.074	NFATC3 NFATC2 NFATC1
CEBPA,B_DDIT3.p2	-0.074	DDIT3 CEBPA CEBPB
NFE2.p2	-0.099	NFE2
AACACUG	-0.124
NKX6-1,2.p2	-0.125	NKX6-1 NKX6-2
AGCAGCG	-0.127
AGCACCA	-0.157
SREBF1,2.p2	-0.180	SREBF1 SREBF2
HOXA9_MEIS1.p2	-0.212	MEIS1 HOXA9
UGACCUA	-0.219
AACCGUU	-0.244
SOX5.p2	-0.248	SOX5
GGAGUGU	-0.253
AAUGCCC	-0.287
CCUUCAU	-0.295
NFE2L1.p2	-0.301	NFE2L1
VSX1,2.p2	-0.311	VSX2 VSX1
GAUAUGU	-0.337
FOSL2.p2	-0.363	FOSL2
DMAP1_NCOR{1,2}_SMARC.p2	-0.374	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
ADNP_IRX_SIX_ZHX.p2	-0.394	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
SOX2.p2	-0.397	SOX2
CCAGUGU	-0.400
AGCUUAU	-0.426
HOX{A4,D4}.p2	-0.447	HOXA4 HOXD4
ESRRA.p2	-0.473	ESRRA
GCUACAU	-0.475
AACCUGG	-0.503
FOXA2.p3	-0.573	FOXA2
T.p2	-0.647	T
ARID5B.p2	-0.673	ARID5B
HSF1,2.p2	-0.720	HSF1 HSF2
NKX3-2.p2	-0.770	NKX3-2
ESR1.p2	-0.784	ESR1
CDX1,2,4.p2	-0.790	CDX1 CDX2 CDX4
ONECUT1,2.p2	-0.791	ONECUT2 ONECUT1
MAFB.p2	-0.811	MAFB
TBP.p2	-0.865	TBP
GUAACAG	-0.877
PITX1..3.p2	-0.895	PITX2 PITX3 PITX1
GFI1B.p2	-0.897	GFI1B
UUGGCAA	-0.906
GAUUGUC	-0.923
AUGGCAC	-1.036
CTCF.p2	-1.061	CTCF
CRX.p2	-1.138	CRX
GUAGUGU	-1.202
UCCAGUU	-1.218
ATF6.p2	-1.227	ATF6
AUGUGCC	-1.256
TFAP2B.p2	-1.320	TFAP2B
PPARG.p2	-1.361	PPARG
HES1.p2	-1.369	HES1
IRF1,2,7.p3	-1.428	IRF1 IRF2 IRF7
UAAUGCU	-1.459
PAX5.p2	-1.528	PAX5
NFE2L2.p2	-1.556	NFE2L2
PRDM1.p3	-1.576	PRDM1
NFKB1_REL_RELA.p2	-1.618	RELA REL NFKB1
ACAGUAC	-1.663
AGUGGUU	-1.769
ZNF148.p2	-1.787	ZNF148
ZBTB16.p2	-1.884	ZBTB16
TFAP4.p2	-1.897	TFAP4
PBX1.p2	-1.987	PBX1
EP300.p2	-1.994	EP300
FOXQ1.p2	-2.074	FOXQ1
PATZ1.p2	-2.077	PATZ1
BPTF.p2	-2.108	BPTF
ACAGUAU	-2.130
NKX2-2,8.p2	-2.147	NKX2-2 NKX2-8
UCACAUU	-2.171
FOXN1.p2	-2.213	FOXN1
UCAAGUA	-2.214
CUUUGGU	-2.238
SRF.p3	-2.244	SRF
SOX17.p2	-2.354	SOX17
ATF5_CREB3.p2	-2.414	ATF5 CREB3
SPIB.p2	-2.421	SPIB
AHR_ARNT_ARNT2.p2	-2.484	ARNT AHR ARNT2
FOXD3.p2	-2.496	FOXD3
KLF4.p3	-2.504	KLF4
CREB1.p2	-2.660	CREB1
RXRG_dimer.p3	-2.785	NR1H2 RXRA PPARG PPARA RXRB RXRG
bHLH_family.p2	-2.838	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
TP53.p2	-2.960	TP53
BACH2.p2	-2.994	BACH2
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-3.095	ARNT MAX MYC USF1 BHLHB2 ARNT2
GGAAUGU	-3.360
HIF1A.p2	-3.607	HIF1A
ATF4.p2	-3.641	ATF4
SPI1.p2	-3.936	SPI1
MYB.p2	-4.040	MYB
AAGGCAC	-4.574
EHF.p2	-4.751	EHF
XBP1.p3	-4.924	XBP1
TFDP1.p2	-5.138	TFDP1
E2F1..5.p2	-5.377	E2F4 E2F5 E2F2 E2F1 E2F3
ZNF143.p2	-5.566	ZNF143
ELK1,4_GABP{A,B1}.p3	-6.313	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
ELF1,2,4.p2	-7.361	ELF2 ELF1 ELF4
NFY{A,B,C}.p2	-7.807	NFYC NFYB NFYA
NRF1.p2	-8.094	NRF1
YY1.p2	-10.469	YY1

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Sample name: GNF_2_Pons

Sorted z-values for every WM.