ISMARA results: GNF_2_TestisGermCell

Sample name: GNF_2_TestisGermCell

Sorted Z-values histogram for the sample GNF_2_TestisGermCell

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
SRF.p3	7.747	SRF
MYB.p2	4.428	MYB
TLX1..3_NFIC{dimer}.p2	3.615	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
FOXO1,3,4.p2	2.910	FOXO1 FOXO4 FOXO3
TEAD1.p2	2.749	TEAD1 TEAD2 TEAD3 TEAD4
ATF2.p2	2.696	ATF2
RFX1..5_RFXANK_RFXAP.p2	2.669	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
GUGCAAA	2.608
HBP1_HMGB_SSRP1_UBTF.p2	2.562	HMGB2 HMGB3 SSRP1 UBTF HBP1
IKZF2.p2	2.550	IKZF2
MZF1.p2	2.448	MZF1
FOX{D1,D2}.p2	2.420	FOXD2 FOXD1
EN1,2.p2	2.409	EN1 EN2
TBP.p2	2.320	TBP
TFAP4.p2	2.296	TFAP4
KLF12.p2	2.290	KLF12
EGR1..3.p2	2.235	EGR3 EGR1 EGR2
RXR{A,B,G}.p2	2.215	RXRA RXRB RXRG
AGCACCA	2.213
AAUACUG	2.186
UUUUUGC	2.149
XBP1.p3	2.096	XBP1
GATA1..3.p2	1.976	GATA1 GATA2 GATA3
KLF4.p3	1.976	KLF4
CUCCCAA	1.950
PAX2.p2	1.931	PAX2
TFAP2{A,C}.p2	1.875	TFAP2C TFAP2A
FOX{C1,C2}.p2	1.845	FOXC1 FOXC2
ZIC1..3.p2	1.715	ZIC1 ZIC2 ZIC3
RXRG_dimer.p3	1.691	NR1H2 RXRA PPARG PPARA RXRB RXRG
STAT1,3.p3	1.669	STAT1 STAT3
FOS_FOS{B,L1}_JUN{B,D}.p2	1.609	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
GUAGUGU	1.599
SMAD1..7,9.p2	1.594	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
TFCP2.p2	1.579	TFCP2
SRY.p2	1.529	SRY
TFEB.p2	1.516	TFEB
HMGA1,2.p2	1.494	HMGA1 HMGA2
MYOD1.p2	1.447	MYOD1
TBX4,5.p2	1.415	TBX5 TBX4
AGCAGCA	1.311
HAND1,2.p2	1.288	HAND1 HAND2
UUGGCAA	1.278
JUN.p2	1.269	JUN JUND JUNB
AAAGUGC	1.203
NR6A1.p2	1.148	NR6A1
DBP.p2	1.130	DBP
MYFfamily.p2	1.105	MYOD1 MYF6 MYF5 MYOG
GGCUCAG	1.104
NR3C1.p2	1.074	NR3C1
MEF2{A,B,C,D}.p2	1.074	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
NANOG{mouse}.p2	1.068	NANOG
MTF1.p2	1.042	MTF1
FOXQ1.p2	1.034	FOXQ1
RREB1.p2	1.030	RREB1
POU6F1.p2	1.020	POU6F1
PAX6.p2	1.005	PAX6
UUGUUCG	0.989
MAZ.p2	0.985	MAZ
GGCAAGA	0.946
AGUGGUU	0.940
MSX1,2.p2	0.938	MSX1 MSX2
CUACAGU	0.898
UAAGACU	0.886
ACAGUAU	0.880
ESRRA.p2	0.870	ESRRA
ONECUT1,2.p2	0.850	ONECUT2 ONECUT1
CDX1,2,4.p2	0.832	CDX1 CDX2 CDX4
AAGGUGC	0.815
UAAUGCU	0.781
HOX{A5,B5}.p2	0.778	HOXB5 HOXA5
POU3F1..4.p2	0.770	POU3F1 POU3F3 POU3F2 POU3F4
FOXN1.p2	0.765	FOXN1
HIC1.p2	0.737	HIC1
RORA.p2	0.733	RORA
GATA6.p2	0.691	GATA6
ZNF238.p2	0.686	ZNF238
LEF1_TCF7_TCF7L1,2.p2	0.677	TCF7 TCF7L2 LEF1 TCF7L1
PRRX1,2.p2	0.669	PRRX2 PRRX1
CGUGUCU	0.669
UAAGACG	0.644
ACAUUCA	0.638
HSF1,2.p2	0.635	HSF1 HSF2
MAFB.p2	0.593	MAFB
SPZ1.p2	0.583	SPZ1
ALX1.p2	0.571	ALX1
CGUACCG	0.558
EHF.p2	0.558	EHF
CRX.p2	0.542	CRX
UGAAAUG	0.524
CDC5L.p2	0.505	CDC5L
STAT5{A,B}.p2	0.498	STAT5B STAT5A
SREBF1,2.p2	0.491	SREBF1 SREBF2
POU1F1.p2	0.487	POU1F1
ACAGUAC	0.484
ZNF423.p2	0.477	ZNF423
FOSL2.p2	0.470	FOSL2
RBPJ.p2	0.470	RBPJ
CCAGUGU	0.457
GAGAACU	0.448
GGAAUGU	0.446
EVI1.p2	0.418	EVI1
AGCUUAU	0.417
GUCAGUU	0.411
AUGGCUU	0.409
NFIL3.p2	0.400	NFIL3
UUGGCAC	0.393
CACAGUG	0.369
SP1.p2	0.327	SP1
AAGGCAC	0.325
NFIX.p2	0.319	NFIX
GAGAUGA	0.317
TLX2.p2	0.306	TLX2
MYBL2.p2	0.305	MYBL2
AUGUGCC	0.302
POU5F1_SOX2{dimer}.p2	0.288	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
GFI1.p2	0.286	GFI1
NKX2-2,8.p2	0.272	NKX2-2 NKX2-8
NFATC1..3.p2	0.267	NFATC3 NFATC2 NFATC1
LMO2.p2	0.260	LMO2
NR1H4.p2	0.257	NR1H4
VSX1,2.p2	0.250	VSX2 VSX1
NFE2L1.p2	0.235	NFE2L1
UCCCUUU	0.230
AACCUGG	0.225
UCCAGUU	0.223
NKX6-1,2.p2	0.220	NKX6-1 NKX6-2
NFKB1_REL_RELA.p2	0.219	RELA REL NFKB1
FOXL1.p2	0.210	FOXL1
UGUGCGU	0.207
AAGUGCU	0.204
GTF2A1,2.p2	0.190	GTF2A1 GTF2A2
GZF1.p2	0.186	GZF1
PAX4.p2	0.182	PAX4
AUGGCAC	0.166
GUAAACA	0.161
TCF4_dimer.p2	0.135	TCF4
CAGCAGG	0.134
AUUGCAC	0.104
ZNF384.p2	0.099	ZNF384
GCUACAU	0.048
TAL1_TCF{3,4,12}.p2	0.040	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
PAX8.p2	0.036	PAX8
AACCGUU	0.018
GAUAUGU	0.017
ATF6.p2	0.009	ATF6
CREB1.p2	-0.001	CREB1
NR5A1,2.p2	-0.007	NR5A1 NR5A2
ACCCGUA	-0.013
ACUGCAU	-0.022
GAUCAGA	-0.025
HLF.p2	-0.042	HLF
UGCAUAG	-0.057
PAX3,7.p2	-0.070	PAX7 PAX3
GAUUGUC	-0.074
SOX2.p2	-0.103	SOX2
GUAACAG	-0.128
NKX2-3_NKX2-5.p2	-0.160	NKX2-5 NKX2-3
FOXD3.p2	-0.212	FOXD3
PBX1.p2	-0.231	PBX1
UGCAUUG	-0.248
ACUGGCC	-0.255
UGACCUA	-0.262
PDX1.p2	-0.266	PDX1
AAUGCCC	-0.282
AACACUG	-0.293
AGUGCAA	-0.319
AGCAGCG	-0.331
FEV.p2	-0.346	FEV
CUUUGGU	-0.353
ARID5B.p2	-0.354	ARID5B
PRDM1.p3	-0.357	PRDM1
GGACGGA	-0.358
NKX2-1,4.p2	-0.360	NKX2-1 NKX2-4
GTF2I.p2	-0.400	GTF2I
HOXA9_MEIS1.p2	-0.402	MEIS1 HOXA9
NANOG.p2	-0.404	NANOG
NRF1.p2	-0.405	NRF1
CAGUGCA	-0.414
UGUGCUU	-0.416
UUGGUCC	-0.441
AAUCUCU	-0.458
AAUCUCA	-0.465
UCACAGU	-0.468
TP53.p2	-0.469	TP53
HNF1A.p2	-0.471	HNF1A
AGCUGCC	-0.479
AIRE.p2	-0.532	AIRE
GAGGUAG	-0.545
AHR_ARNT_ARNT2.p2	-0.549	ARNT AHR ARNT2
RXRA_VDR{dimer}.p2	-0.556	VDR	$logo of RXRA_VDR{dimer}.p2$
AACGGAA	-0.568
AUGACAC	-0.586
AR.p2	-0.589	AR
LHX3,4.p2	-0.625	LHX3 LHX4
UCACAUU	-0.656
CCAGCAU	-0.657
T.p2	-0.672	T
SOX17.p2	-0.712	SOX17
UAUUGCU	-0.727
ACCCUGU	-0.749
AACAGUC	-0.751
AGGUAGU	-0.764
FOXP3.p2	-0.765	FOXP3
SOX{8,9,10}.p2	-0.771	SOX9 SOX8 SOX10
TGIF1.p2	-0.817	TGIF1
SOX5.p2	-0.825	SOX5
GGAGUGU	-0.859
GLI1..3.p2	-0.868	GLI1 GLI2 GLI3
CCUUCAU	-0.898
NHLH1,2.p2	-0.908	NHLH1 NHLH2
EWSR1-FLI1.p2	-0.933	FLI1 EWSR1
TFAP2B.p2	-0.964	TFAP2B
PITX1..3.p2	-0.981	PITX2 PITX3 PITX1
ADNP_IRX_SIX_ZHX.p2	-1.023	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
EOMES.p2	-1.025	EOMES
NFE2.p2	-1.043	NFE2
ESR1.p2	-1.049	ESR1
HOX{A4,D4}.p2	-1.053	HOXA4 HOXD4
PPARG.p2	-1.137	PPARG
GFI1B.p2	-1.138	GFI1B
BACH2.p2	-1.164	BACH2
SNAI1..3.p2	-1.199	SNAI2 SNAI1 SNAI3
NKX3-1.p2	-1.231	NKX3-1
NKX3-2.p2	-1.237	NKX3-2
PAX5.p2	-1.242	PAX5
CEBPA,B_DDIT3.p2	-1.280	DDIT3 CEBPA CEBPB
EP300.p2	-1.322	EP300
POU5F1.p2	-1.334	POU5F1
ATF5_CREB3.p2	-1.340	ATF5 CREB3
FOX{I1,J2}.p2	-1.347	FOXI1 FOXJ2
ZNF148.p2	-1.374	ZNF148
UCAAGUA	-1.382
CUX2.p2	-1.394	CUX2
HES1.p2	-1.398	HES1
GGAAGAC	-1.445
GCUGGUG	-1.458
SPI1.p2	-1.562	SPI1
ZFP161.p2	-1.662	ZFP161
bHLH_family.p2	-1.666	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
ATF4.p2	-1.687	ATF4
HMX1.p2	-1.714	HMX1
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-1.723	ARNT MAX MYC USF1 BHLHB2 ARNT2
ETS1,2.p2	-1.730	ETS2 ETS1
PATZ1.p2	-1.799	PATZ1
BPTF.p2	-1.887	BPTF
ZBTB6.p2	-1.897	ZBTB6
CTCF.p2	-1.930	CTCF
ZBTB16.p2	-1.980	ZBTB16
ZEB1.p2	-2.002	ZEB1
ELK1,4_GABP{A,B1}.p3	-2.020	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
HOX{A6,A7,B6,B7}.p2	-2.025	HOXB6 HOXA7 HOXB7 HOXA6
REST.p3	-2.028	REST
POU2F1..3.p2	-2.111	POU2F2 POU2F1 POU2F3
FOXA2.p3	-2.139	FOXA2
STAT2,4,6.p2	-2.178	STAT2 STAT4 STAT6
FOX{F1,F2,J1}.p2	-2.192	FOXF2 FOXJ1 FOXF1
EBF1.p2	-2.354	EBF1
GCAGCAU	-2.450
GGCAGUG	-2.568
RUNX1..3.p2	-2.576	RUNX1 RUNX3 RUNX2
NR4A2.p2	-2.646	NR4A2
SPIB.p2	-2.683	SPIB
IKZF1.p2	-2.761	IKZF1
CCCUGAG	-2.849
TFDP1.p2	-2.868	TFDP1
DMAP1_NCOR{1,2}_SMARC.p2	-2.894	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
ELF1,2,4.p2	-2.938	ELF2 ELF1 ELF4
HIF1A.p2	-3.383	HIF1A
IRF1,2,7.p3	-3.566	IRF1 IRF2 IRF7
NFE2L2.p2	-3.764	NFE2L2
ZNF143.p2	-4.254	ZNF143
NFY{A,B,C}.p2	-4.288	NFYC NFYB NFYA
HNF4A_NR2F1,2.p2	-4.627	NR2F1 NR2F2 HNF4A
YY1.p2	-4.760	YY1
E2F1..5.p2	-5.977	E2F4 E2F5 E2F2 E2F1 E2F3

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Sample name: GNF_2_TestisGermCell

Sorted z-values for every WM.