ISMARA results: GNF_2

Sample name: GNF_2_Thalamus

Sorted Z-values histogram for the sample GNF_2_Thalamus

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
RFX1..5_RFXANK_RFXAP.p2	6.591	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
REST.p3	6.550	REST
HIC1.p2	4.588	HIC1
MTF1.p2	4.224	MTF1
CUCCCAA	4.153
KLF12.p2	3.916	KLF12
JUN.p2	3.760	JUN JUND JUNB
ZFP161.p2	3.666	ZFP161
MYOD1.p2	3.657	MYOD1
TGIF1.p2	3.656	TGIF1
ATF2.p2	3.637	ATF2
TFCP2.p2	3.381	TFCP2
UGUGCUU	3.378
MEF2{A,B,C,D}.p2	3.331	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
NHLH1,2.p2	3.312	NHLH1 NHLH2
ESRRA.p2	3.273	ESRRA
ZIC1..3.p2	3.225	ZIC1 ZIC2 ZIC3
RREB1.p2	3.184	RREB1
NR5A1,2.p2	3.118	NR5A1 NR5A2
GGCAGUG	3.117
TAL1_TCF{3,4,12}.p2	3.050	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
TCF4_dimer.p2	2.986	TCF4
FOX{I1,J2}.p2	2.916	FOXI1 FOXJ2
GATA1..3.p2	2.911	GATA1 GATA2 GATA3
CAGCAGG	2.904
SMAD1..7,9.p2	2.900	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
MAFB.p2	2.736	MAFB
EBF1.p2	2.697	EBF1
LMO2.p2	2.676	LMO2
RXR{A,B,G}.p2	2.668	RXRA RXRB RXRG
HOX{A5,B5}.p2	2.517	HOXB5 HOXA5
PAX2.p2	2.445	PAX2
EVI1.p2	2.398	EVI1
SRY.p2	2.334	SRY
MZF1.p2	2.295	MZF1
SOX{8,9,10}.p2	2.269	SOX9 SOX8 SOX10
GGCUCAG	2.228
PAX4.p2	2.193	PAX4
NR4A2.p2	2.143	NR4A2
UUGGUCC	2.120
DBP.p2	2.106	DBP
SP1.p2	2.076	SP1
SOX2.p2	1.992	SOX2
GTF2I.p2	1.914	GTF2I
ZBTB6.p2	1.843	ZBTB6
HAND1,2.p2	1.760	HAND1 HAND2
AUUGCAC	1.735
CACAGUG	1.728
TBX4,5.p2	1.682	TBX5 TBX4
NFIX.p2	1.650	NFIX
NKX2-3_NKX2-5.p2	1.639	NKX2-5 NKX2-3
TFEB.p2	1.631	TFEB
GUGCAAA	1.626
EN1,2.p2	1.615	EN1 EN2
FEV.p2	1.613	FEV
UUGGCAC	1.610
AUGGCUU	1.569
UAAGACG	1.527
FOXP3.p2	1.515	FOXP3
UAUUGCU	1.459
IKZF1.p2	1.454	IKZF1
AGCAGCA	1.448
HNF4A_NR2F1,2.p2	1.433	NR2F1 NR2F2 HNF4A
IKZF2.p2	1.379	IKZF2
SPZ1.p2	1.282	SPZ1
FOXO1,3,4.p2	1.274	FOXO1 FOXO4 FOXO3
HOX{A6,A7,B6,B7}.p2	1.263	HOXB6 HOXA7 HOXB7 HOXA6
MSX1,2.p2	1.229	MSX1 MSX2
EGR1..3.p2	1.222	EGR3 EGR1 EGR2
ESR1.p2	1.210	ESR1
AGUGCAA	1.208
GTF2A1,2.p2	1.148	GTF2A1 GTF2A2
ZNF384.p2	1.131	ZNF384
UGCAUAG	1.124
NKX3-1.p2	1.100	NKX3-1
EWSR1-FLI1.p2	1.042	FLI1 EWSR1
TLX1..3_NFIC{dimer}.p2	1.012	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
HMX1.p2	0.996	HMX1
AGCUGCC	0.992
AAUACUG	0.977
STAT2,4,6.p2	0.974	STAT2 STAT4 STAT6
UCCCUUU	0.933
AAGUGCU	0.933
STAT1,3.p3	0.916	STAT1 STAT3
POU6F1.p2	0.905	POU6F1
PAX6.p2	0.894	PAX6
HSF1,2.p2	0.884	HSF1 HSF2
CGUACCG	0.865
RORA.p2	0.860	RORA
SREBF1,2.p2	0.827	SREBF1 SREBF2
CTCF.p2	0.790	CTCF
CRX.p2	0.767	CRX
GUCAGUU	0.748
GCUACAU	0.735
CUACAGU	0.733
GGCAAGA	0.727
ALX1.p2	0.715	ALX1
CCAGCAU	0.708
TBP.p2	0.699	TBP
CAGUGCA	0.695
CEBPA,B_DDIT3.p2	0.694	DDIT3 CEBPA CEBPB
CGUGUCU	0.690
RXRA_VDR{dimer}.p2	0.679	VDR	$logo of RXRA_VDR{dimer}.p2$
GLI1..3.p2	0.676	GLI1 GLI2 GLI3
UGCAUUG	0.674
AAAGUGC	0.659
CUX2.p2	0.625	CUX2
GAGAACU	0.609
GAUCAGA	0.584
UAAGACU	0.579
NR1H4.p2	0.561	NR1H4
POU5F1.p2	0.525	POU5F1
AACGGAA	0.522
MYFfamily.p2	0.518	MYOD1 MYF6 MYF5 MYOG
CCCUGAG	0.507
NR3C1.p2	0.493	NR3C1
PAX3,7.p2	0.486	PAX7 PAX3
ACUGGCC	0.464
LHX3,4.p2	0.432	LHX3 LHX4
FOS_FOS{B,L1}_JUN{B,D}.p2	0.427	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
AR.p2	0.426	AR
POU5F1_SOX2{dimer}.p2	0.381	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
SNAI1..3.p2	0.364	SNAI2 SNAI1 SNAI3
AIRE.p2	0.359	AIRE
AACAGUC	0.344
GZF1.p2	0.341	GZF1
HMGA1,2.p2	0.337	HMGA1 HMGA2
UGUGCGU	0.326
FOX{F1,F2,J1}.p2	0.318	FOXF2 FOXJ1 FOXF1
RUNX1..3.p2	0.312	RUNX1 RUNX3 RUNX2
NKX6-1,2.p2	0.309	NKX6-1 NKX6-2
GFI1.p2	0.307	GFI1
ETS1,2.p2	0.306	ETS2 ETS1
NR6A1.p2	0.302	NR6A1
POU1F1.p2	0.273	POU1F1
NKX2-1,4.p2	0.184	NKX2-1 NKX2-4
NFE2L1.p2	0.168	NFE2L1
GGAAGAC	0.167
PRRX1,2.p2	0.158	PRRX2 PRRX1
UCACAGU	0.148
GAGAUGA	0.143
GGACGGA	0.127
NFIL3.p2	0.107	NFIL3
AACACUG	0.102
TEAD1.p2	0.089	TEAD1 TEAD2 TEAD3 TEAD4
UGACCUA	0.055
AACCGUU	0.020
GCUGGUG	0.012
CCAGUGU	-0.027
FOXL1.p2	-0.031	FOXL1
AUGACAC	-0.040
CDX1,2,4.p2	-0.052	CDX1 CDX2 CDX4
GCAGCAU	-0.056
PAX8.p2	-0.059	PAX8
LEF1_TCF7_TCF7L1,2.p2	-0.070	TCF7 TCF7L2 LEF1 TCF7L1
AGCAGCG	-0.074
T.p2	-0.081	T
ACCCGUA	-0.084
STAT5{A,B}.p2	-0.094	STAT5B STAT5A
ACUGCAU	-0.142
NFE2L2.p2	-0.149	NFE2L2
UGAAAUG	-0.184
GUAAACA	-0.202
ZNF423.p2	-0.214	ZNF423
HLF.p2	-0.228	HLF
HES1.p2	-0.230	HES1
ARID5B.p2	-0.239	ARID5B
AAUCUCA	-0.248
MAZ.p2	-0.255	MAZ
TLX2.p2	-0.263	TLX2
NKX3-2.p2	-0.278	NKX3-2
HOXA9_MEIS1.p2	-0.289	MEIS1 HOXA9
GGAGUGU	-0.295
POU3F1..4.p2	-0.310	POU3F1 POU3F3 POU3F2 POU3F4
ACAUUCA	-0.315
HOX{A4,D4}.p2	-0.326	HOXA4 HOXD4
PATZ1.p2	-0.346	PATZ1
AAUCUCU	-0.356
UUGUUCG	-0.373
PDX1.p2	-0.382	PDX1
ACCCUGU	-0.395
AAUGCCC	-0.397
CCUUCAU	-0.410
HBP1_HMGB_SSRP1_UBTF.p2	-0.436	HMGB2 HMGB3 SSRP1 UBTF HBP1
ADNP_IRX_SIX_ZHX.p2	-0.437	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
AGGUAGU	-0.448
NKX2-2,8.p2	-0.456	NKX2-2 NKX2-8
GUAACAG	-0.466
PAX5.p2	-0.476	PAX5
NANOG{mouse}.p2	-0.476	NANOG
UUUUUGC	-0.476
TFAP2{A,C}.p2	-0.479	TFAP2C TFAP2A
NANOG.p2	-0.485	NANOG
AAGGUGC	-0.505
ATF4.p2	-0.511	ATF4
MYBL2.p2	-0.534	MYBL2
GFI1B.p2	-0.581	GFI1B
SOX5.p2	-0.588	SOX5
EOMES.p2	-0.607	EOMES
VSX1,2.p2	-0.609	VSX2 VSX1
CDC5L.p2	-0.614	CDC5L
ACAGUAC	-0.651
GAUAUGU	-0.662
NFATC1..3.p2	-0.676	NFATC3 NFATC2 NFATC1
NFE2.p2	-0.691	NFE2
FOX{D1,D2}.p2	-0.760	FOXD2 FOXD1
TP53.p2	-0.767	TP53
AGUGGUU	-0.771
ZEB1.p2	-0.809	ZEB1
TFAP2B.p2	-0.837	TFAP2B
FOSL2.p2	-0.855	FOSL2
PBX1.p2	-0.889	PBX1
UUGGCAA	-0.901
FOXA2.p3	-0.934	FOXA2
AACCUGG	-1.000
AUGGCAC	-1.027
UCACAUU	-1.083
FOX{C1,C2}.p2	-1.109	FOXC1 FOXC2
ZNF238.p2	-1.116	ZNF238
UCCAGUU	-1.186
KLF4.p3	-1.219	KLF4
PPARG.p2	-1.230	PPARG
TFAP4.p2	-1.257	TFAP4
GATA6.p2	-1.308	GATA6
FOXQ1.p2	-1.318	FOXQ1
UAAUGCU	-1.323
BACH2.p2	-1.341	BACH2
ACAGUAU	-1.376
DMAP1_NCOR{1,2}_SMARC.p2	-1.403	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
GAGGUAG	-1.448
ONECUT1,2.p2	-1.564	ONECUT2 ONECUT1
BPTF.p2	-1.598	BPTF
HNF1A.p2	-1.689	HNF1A
ZNF148.p2	-1.733	ZNF148
AGCACCA	-1.733
HIF1A.p2	-1.747	HIF1A
AUGUGCC	-1.751
GGAAUGU	-1.860
SRF.p3	-1.875	SRF
CUUUGGU	-1.927
AGCUUAU	-1.957
RBPJ.p2	-2.007	RBPJ
PRDM1.p3	-2.047	PRDM1
ZBTB16.p2	-2.062	ZBTB16
POU2F1..3.p2	-2.081	POU2F2 POU2F1 POU2F3
FOXN1.p2	-2.106	FOXN1
RXRG_dimer.p3	-2.119	NR1H2 RXRA PPARG PPARA RXRB RXRG
GUAGUGU	-2.137
EP300.p2	-2.160	EP300
IRF1,2,7.p3	-2.200	IRF1 IRF2 IRF7
ATF5_CREB3.p2	-2.213	ATF5 CREB3
SPIB.p2	-2.254	SPIB
SOX17.p2	-2.260	SOX17
ATF6.p2	-2.346	ATF6
CREB1.p2	-2.377	CREB1
EHF.p2	-2.386	EHF
UCAAGUA	-2.414
XBP1.p3	-2.438	XBP1
GAUUGUC	-2.455
PITX1..3.p2	-2.527	PITX2 PITX3 PITX1
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-2.538	ARNT MAX MYC USF1 BHLHB2 ARNT2
NRF1.p2	-2.647	NRF1
bHLH_family.p2	-2.820	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
ZNF143.p2	-3.025	ZNF143
FOXD3.p2	-3.309	FOXD3
ELK1,4_GABP{A,B1}.p3	-3.536	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
AHR_ARNT_ARNT2.p2	-3.765	ARNT AHR ARNT2
NFKB1_REL_RELA.p2	-4.013	RELA REL NFKB1
MYB.p2	-4.087	MYB
AAGGCAC	-4.355
SPI1.p2	-4.457	SPI1
YY1.p2	-4.844	YY1
NFY{A,B,C}.p2	-5.172	NFYC NFYB NFYA
ELF1,2,4.p2	-6.164	ELF2 ELF1 ELF4
TFDP1.p2	-7.104	TFDP1
E2F1..5.p2	-7.477	E2F4 E2F5 E2F2 E2F1 E2F3

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Sample name: GNF_2_Thalamus

Sorted z-values for every WM.