ISMARA results: GNF_2_TrigeminalGanglion

Sample name: GNF_2_TrigeminalGanglion

Sorted Z-values histogram for the sample GNF_2_TrigeminalGanglion

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
UUUUUGC	10.050
CUCCCAA	8.806
TLX1..3_NFIC{dimer}.p2	5.383	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
KLF12.p2	4.539	KLF12
MYFfamily.p2	4.106	MYOD1 MYF6 MYF5 MYOG
EVI1.p2	3.896	EVI1
SNAI1..3.p2	3.802	SNAI2 SNAI1 SNAI3
RREB1.p2	3.528	RREB1
GTF2I.p2	3.489	GTF2I
HIC1.p2	3.369	HIC1
LEF1_TCF7_TCF7L1,2.p2	3.149	TCF7 TCF7L2 LEF1 TCF7L1
POU1F1.p2	3.072	POU1F1
TGIF1.p2	3.068	TGIF1
GTF2A1,2.p2	3.059	GTF2A1 GTF2A2
NANOG{mouse}.p2	3.033	NANOG
SMAD1..7,9.p2	3.020	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
UCCCUUU	2.949
JUN.p2	2.755	JUN JUND JUNB
NR1H4.p2	2.729	NR1H4
TEAD1.p2	2.672	TEAD1 TEAD2 TEAD3 TEAD4
MTF1.p2	2.658	MTF1
STAT1,3.p3	2.616	STAT1 STAT3
FOXP3.p2	2.523	FOXP3
NKX2-3_NKX2-5.p2	2.518	NKX2-5 NKX2-3
GAGGUAG	2.484
HNF1A.p2	2.345	HNF1A
AAAGUGC	2.344
GGCUCAG	2.291
FOX{D1,D2}.p2	2.276	FOXD2 FOXD1
FOXA2.p3	2.274	FOXA2
ZIC1..3.p2	2.244	ZIC1 ZIC2 ZIC3
ZNF238.p2	2.197	ZNF238
UGAAAUG	2.167
GATA6.p2	2.151	GATA6
NHLH1,2.p2	2.109	NHLH1 NHLH2
RFX1..5_RFXANK_RFXAP.p2	2.098	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
REST.p3	2.071	REST
CCCUGAG	2.037
POU5F1.p2	1.999	POU5F1
AGCACCA	1.941
TFCP2.p2	1.901	TFCP2
EN1,2.p2	1.883	EN1 EN2
MYOD1.p2	1.830	MYOD1
RXR{A,B,G}.p2	1.775	RXRA RXRB RXRG
POU2F1..3.p2	1.770	POU2F2 POU2F1 POU2F3
RUNX1..3.p2	1.742	RUNX1 RUNX3 RUNX2
STAT2,4,6.p2	1.741	STAT2 STAT4 STAT6
GGCAGUG	1.725
GAGAUGA	1.705
UGUGCUU	1.641
HAND1,2.p2	1.638	HAND1 HAND2
HMX1.p2	1.629	HMX1
GUAAACA	1.625
SRY.p2	1.597	SRY
RBPJ.p2	1.580	RBPJ
UUGUUCG	1.545
AGCUGCC	1.463
NKX2-1,4.p2	1.447	NKX2-1 NKX2-4
TBP.p2	1.422	TBP
GATA1..3.p2	1.384	GATA1 GATA2 GATA3
GAGAACU	1.354
NFATC1..3.p2	1.339	NFATC3 NFATC2 NFATC1
CACAGUG	1.285
MZF1.p2	1.270	MZF1
EBF1.p2	1.265	EBF1
PAX6.p2	1.246	PAX6
TBX4,5.p2	1.232	TBX5 TBX4
FOXL1.p2	1.219	FOXL1
SRF.p3	1.211	SRF
AAGUGCU	1.199
FEV.p2	1.154	FEV
ALX1.p2	1.121	ALX1
TAL1_TCF{3,4,12}.p2	1.117	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
ZNF384.p2	1.105	ZNF384
LHX3,4.p2	1.077	LHX3 LHX4
NFIL3.p2	1.073	NFIL3
NFKB1_REL_RELA.p2	1.025	RELA REL NFKB1
UGCAUAG	1.020
HMGA1,2.p2	1.011	HMGA1 HMGA2
AAUCUCU	0.986
MYBL2.p2	0.981	MYBL2
TCF4_dimer.p2	0.952	TCF4
POU6F1.p2	0.918	POU6F1
CGUGUCU	0.914
AIRE.p2	0.911	AIRE
AAUACUG	0.908
AGUGCAA	0.903
CCAGCAU	0.902
HBP1_HMGB_SSRP1_UBTF.p2	0.853	HMGB2 HMGB3 SSRP1 UBTF HBP1
ATF6.p2	0.853	ATF6
GAUCAGA	0.804
CUACAGU	0.804
HOXA9_MEIS1.p2	0.799	MEIS1 HOXA9
MSX1,2.p2	0.785	MSX1 MSX2
AGCAGCA	0.774
RORA.p2	0.743	RORA
CAGCAGG	0.732
UUGGCAA	0.723
ETS1,2.p2	0.721	ETS2 ETS1
STAT5{A,B}.p2	0.720	STAT5B STAT5A
ZEB1.p2	0.719	ZEB1
PDX1.p2	0.690	PDX1
FOS_FOS{B,L1}_JUN{B,D}.p2	0.688	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
CCAGUGU	0.681
CUUUGGU	0.675
NFIX.p2	0.653	NFIX
AUGGCUU	0.649
UCACAGU	0.637
HLF.p2	0.629	HLF
POU3F1..4.p2	0.601	POU3F1 POU3F3 POU3F2 POU3F4
NR3C1.p2	0.596	NR3C1
PRRX1,2.p2	0.587	PRRX2 PRRX1
AUGACAC	0.583
UAAGACU	0.570
TLX2.p2	0.568	TLX2
RXRA_VDR{dimer}.p2	0.549	VDR	$logo of RXRA_VDR{dimer}.p2$
GUCAGUU	0.547
POU5F1_SOX2{dimer}.p2	0.535	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
TFAP4.p2	0.528	TFAP4
UUGGUCC	0.517
HSF1,2.p2	0.509	HSF1 HSF2
TFEB.p2	0.464	TFEB
IKZF1.p2	0.440	IKZF1
AACACUG	0.419
ACUGCAU	0.403
GLI1..3.p2	0.378	GLI1 GLI2 GLI3
ACCCUGU	0.369
FOX{C1,C2}.p2	0.362	FOXC1 FOXC2
HNF4A_NR2F1,2.p2	0.357	NR2F1 NR2F2 HNF4A
PAX2.p2	0.353	PAX2
GFI1.p2	0.344	GFI1
AAUCUCA	0.342
MEF2{A,B,C,D}.p2	0.333	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
NANOG.p2	0.322	NANOG
PAX8.p2	0.315	PAX8
FOSL2.p2	0.310	FOSL2
FOX{I1,J2}.p2	0.293	FOXI1 FOXJ2
CDC5L.p2	0.276	CDC5L
ONECUT1,2.p2	0.267	ONECUT2 ONECUT1
AACCUGG	0.252
DBP.p2	0.242	DBP
AGCUUAU	0.235
AR.p2	0.230	AR
UGUGCGU	0.219
HOX{A4,D4}.p2	0.203	HOXA4 HOXD4
GGCAAGA	0.196
AAGGCAC	0.180
AGGUAGU	0.159
PAX3,7.p2	0.154	PAX7 PAX3
HOX{A5,B5}.p2	0.142	HOXB5 HOXA5
IKZF2.p2	0.137	IKZF2
EOMES.p2	0.135	EOMES
T.p2	0.121	T
ACAUUCA	0.115
VSX1,2.p2	0.086	VSX2 VSX1
AAUGCCC	0.084
CRX.p2	0.080	CRX
UAUUGCU	0.067
AUGUGCC	0.060
UCAAGUA	0.051
GGACGGA	0.047
GGAAGAC	0.046
AUUGCAC	0.033
NR6A1.p2	0.025	NR6A1
CGUACCG	0.025
NKX3-1.p2	0.024	NKX3-1
TFAP2{A,C}.p2	0.001	TFAP2C TFAP2A
ADNP_IRX_SIX_ZHX.p2	-0.011	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
ACCCGUA	-0.023
GAUAUGU	-0.054
SPZ1.p2	-0.056	SPZ1
UAAUGCU	-0.096
ZBTB6.p2	-0.116	ZBTB6
PPARG.p2	-0.117	PPARG
AHR_ARNT_ARNT2.p2	-0.120	ARNT AHR ARNT2
IRF1,2,7.p3	-0.131	IRF1 IRF2 IRF7
UGACCUA	-0.131
AAGGUGC	-0.135
FOX{F1,F2,J1}.p2	-0.137	FOXF2 FOXJ1 FOXF1
CEBPA,B_DDIT3.p2	-0.147	DDIT3 CEBPA CEBPB
ZNF423.p2	-0.163	ZNF423
ACAGUAU	-0.170
CDX1,2,4.p2	-0.181	CDX1 CDX2 CDX4
ACUGGCC	-0.185
EGR1..3.p2	-0.204	EGR3 EGR1 EGR2
PITX1..3.p2	-0.209	PITX2 PITX3 PITX1
GCUGGUG	-0.210
GCUACAU	-0.246
FOXQ1.p2	-0.272	FOXQ1
ACAGUAC	-0.278
MAZ.p2	-0.288	MAZ
UAAGACG	-0.329
AACGGAA	-0.343
UGCAUUG	-0.368
SOX5.p2	-0.408	SOX5
GAUUGUC	-0.417
EWSR1-FLI1.p2	-0.466	FLI1 EWSR1
UUGGCAC	-0.479
NFE2.p2	-0.499	NFE2
GZF1.p2	-0.513	GZF1
AGCAGCG	-0.515
AACCGUU	-0.527
NKX6-1,2.p2	-0.539	NKX6-1 NKX6-2
DMAP1_NCOR{1,2}_SMARC.p2	-0.557	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
LMO2.p2	-0.560	LMO2
GCAGCAU	-0.580
CCUUCAU	-0.592
NR4A2.p2	-0.663	NR4A2
SREBF1,2.p2	-0.675	SREBF1 SREBF2
GFI1B.p2	-0.687	GFI1B
GUAACAG	-0.689
GGAGUGU	-0.725
FOXO1,3,4.p2	-0.737	FOXO1 FOXO4 FOXO3
PRDM1.p3	-0.769	PRDM1
AACAGUC	-0.774
CUX2.p2	-0.794	CUX2
ARID5B.p2	-0.848	ARID5B
CAGUGCA	-0.868
EP300.p2	-0.890	EP300
ESR1.p2	-1.057	ESR1
CREB1.p2	-1.067	CREB1
NFE2L1.p2	-1.068	NFE2L1
ZBTB16.p2	-1.110	ZBTB16
SOX17.p2	-1.157	SOX17
AUGGCAC	-1.158
SOX{8,9,10}.p2	-1.255	SOX9 SOX8 SOX10
SOX2.p2	-1.304	SOX2
ATF2.p2	-1.304	ATF2
PATZ1.p2	-1.365	PATZ1
NKX3-2.p2	-1.395	NKX3-2
ZFP161.p2	-1.405	ZFP161
AGUGGUU	-1.410
UCCAGUU	-1.457
KLF4.p3	-1.488	KLF4
PAX5.p2	-1.488	PAX5
FOXD3.p2	-1.491	FOXD3
SPIB.p2	-1.614	SPIB
SP1.p2	-1.671	SP1
PAX4.p2	-1.718	PAX4
NKX2-2,8.p2	-1.747	NKX2-2 NKX2-8
GUAGUGU	-1.841
TFAP2B.p2	-1.897	TFAP2B
HOX{A6,A7,B6,B7}.p2	-1.926	HOXB6 HOXA7 HOXB7 HOXA6
SPI1.p2	-1.997	SPI1
UCACAUU	-2.009
ZNF148.p2	-2.136	ZNF148
FOXN1.p2	-2.216	FOXN1
E2F1..5.p2	-2.226	E2F4 E2F5 E2F2 E2F1 E2F3
RXRG_dimer.p3	-2.245	NR1H2 RXRA PPARG PPARA RXRB RXRG
PBX1.p2	-2.253	PBX1
NR5A1,2.p2	-2.391	NR5A1 NR5A2
HES1.p2	-2.436	HES1
GUGCAAA	-2.719
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-2.797	ARNT MAX MYC USF1 BHLHB2 ARNT2
TFDP1.p2	-2.854	TFDP1
TP53.p2	-2.863	TP53
CTCF.p2	-2.869	CTCF
BACH2.p2	-2.904	BACH2
bHLH_family.p2	-2.952	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
HIF1A.p2	-3.209	HIF1A
NFE2L2.p2	-3.235	NFE2L2
ATF4.p2	-3.364	ATF4
EHF.p2	-3.389	EHF
ATF5_CREB3.p2	-3.393	ATF5 CREB3
BPTF.p2	-3.483	BPTF
ESRRA.p2	-4.351	ESRRA
MAFB.p2	-4.586	MAFB
MYB.p2	-4.845	MYB
GGAAUGU	-5.137
ELF1,2,4.p2	-5.215	ELF2 ELF1 ELF4
XBP1.p3	-5.377	XBP1
ZNF143.p2	-7.555	ZNF143
ELK1,4_GABP{A,B1}.p3	-7.590	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
NFY{A,B,C}.p2	-8.411	NFYC NFYB NFYA
NRF1.p2	-11.828	NRF1
YY1.p2	-11.871	YY1

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Sample name: GNF_2_TrigeminalGanglion

Sorted z-values for every WM.