ISMARA results: GNF_2_caudatenucleus

Sample name: GNF_2_caudatenucleus

Sorted Z-values histogram for the sample GNF_2_caudatenucleus

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
RFX1..5_RFXANK_RFXAP.p2	7.746	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
REST.p3	7.103	REST
MYOD1.p2	5.984	MYOD1
HIC1.p2	4.692	HIC1
UGUGCUU	4.262
KLF12.p2	4.135	KLF12
RREB1.p2	4.103	RREB1
EGR1..3.p2	4.096	EGR3 EGR1 EGR2
GGCAGUG	3.840
SMAD1..7,9.p2	3.725	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
MZF1.p2	3.675	MZF1
TCF4_dimer.p2	3.579	TCF4
TGIF1.p2	3.577	TGIF1
ATF2.p2	3.480	ATF2
ZIC1..3.p2	3.468	ZIC1 ZIC2 ZIC3
MTF1.p2	3.446	MTF1
GTF2I.p2	3.385	GTF2I
JUN.p2	3.171	JUN JUND JUNB
GGCUCAG	3.135
TFCP2.p2	3.113	TFCP2
UUGGCAC	2.933
NHLH1,2.p2	2.747	NHLH1 NHLH2
PAX2.p2	2.737	PAX2
GATA1..3.p2	2.721	GATA1 GATA2 GATA3
CAGCAGG	2.626
SOX{8,9,10}.p2	2.584	SOX9 SOX8 SOX10
EVI1.p2	2.556	EVI1
CUCCCAA	2.499
TAL1_TCF{3,4,12}.p2	2.489	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
ZFP161.p2	2.462	ZFP161
MYFfamily.p2	2.452	MYOD1 MYF6 MYF5 MYOG
FOXP3.p2	2.448	FOXP3
FOX{I1,J2}.p2	2.422	FOXI1 FOXJ2
UUGGUCC	2.392
HOX{A6,A7,B6,B7}.p2	2.382	HOXB6 HOXA7 HOXB7 HOXA6
AGCAGCA	2.327
TBX4,5.p2	2.295	TBX5 TBX4
STAT2,4,6.p2	2.268	STAT2 STAT4 STAT6
NFIX.p2	2.203	NFIX
AGUGCAA	2.202
DBP.p2	2.168	DBP
MEF2{A,B,C,D}.p2	2.154	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
SRY.p2	2.068	SRY
EBF1.p2	2.042	EBF1
AUGGCUU	2.029
TLX1..3_NFIC{dimer}.p2	2.015	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
FEV.p2	1.965	FEV
MAFB.p2	1.921	MAFB
ZNF384.p2	1.897	ZNF384
HOX{A5,B5}.p2	1.818	HOXB5 HOXA5
LMO2.p2	1.797	LMO2
UCCCUUU	1.788
GUCAGUU	1.782
ALX1.p2	1.769	ALX1
NKX2-3_NKX2-5.p2	1.752	NKX2-5 NKX2-3
NFIL3.p2	1.713	NFIL3
UGCAUAG	1.704
GUGCAAA	1.684
HBP1_HMGB_SSRP1_UBTF.p2	1.606	HMGB2 HMGB3 SSRP1 UBTF HBP1
AUUGCAC	1.587
ESRRA.p2	1.563	ESRRA
HAND1,2.p2	1.505	HAND1 HAND2
NR1H4.p2	1.493	NR1H4
PRRX1,2.p2	1.465	PRRX2 PRRX1
NR4A2.p2	1.445	NR4A2
EN1,2.p2	1.433	EN1 EN2
GLI1..3.p2	1.413	GLI1 GLI2 GLI3
MAZ.p2	1.412	MAZ
CACAGUG	1.401
EWSR1-FLI1.p2	1.398	FLI1 EWSR1
NR5A1,2.p2	1.382	NR5A1 NR5A2
GTF2A1,2.p2	1.374	GTF2A1 GTF2A2
GAUCAGA	1.356
GAGAACU	1.340
HNF4A_NR2F1,2.p2	1.325	NR2F1 NR2F2 HNF4A
CCAGCAU	1.317
SP1.p2	1.272	SP1
RXR{A,B,G}.p2	1.226	RXRA RXRB RXRG
IKZF1.p2	1.221	IKZF1
SPZ1.p2	1.204	SPZ1
GGCAAGA	1.100
CUACAGU	1.093
PAX4.p2	1.070	PAX4
HMGA1,2.p2	1.066	HMGA1 HMGA2
NR3C1.p2	1.062	NR3C1
CDC5L.p2	1.058	CDC5L
CTCF.p2	1.057	CTCF
POU5F1.p2	1.045	POU5F1
AAAGUGC	1.041
NANOG.p2	1.028	NANOG
UAAGACG	1.022
AAUACUG	1.012
FOXO1,3,4.p2	0.984	FOXO1 FOXO4 FOXO3
LEF1_TCF7_TCF7L1,2.p2	0.961	TCF7 TCF7L2 LEF1 TCF7L1
ZBTB6.p2	0.952	ZBTB6
IKZF2.p2	0.926	IKZF2
AAGGUGC	0.915
EOMES.p2	0.896	EOMES
SOX2.p2	0.874	SOX2
NKX3-1.p2	0.855	NKX3-1
POU2F1..3.p2	0.855	POU2F2 POU2F1 POU2F3
POU5F1_SOX2{dimer}.p2	0.840	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
AAGUGCU	0.838
RXRA_VDR{dimer}.p2	0.829	VDR	$logo of RXRA_VDR{dimer}.p2$
SREBF1,2.p2	0.799	SREBF1 SREBF2
GGAAGAC	0.760
CUX2.p2	0.753	CUX2
TFEB.p2	0.726	TFEB
UGCAUUG	0.710
PDX1.p2	0.672	PDX1
HOXA9_MEIS1.p2	0.668	MEIS1 HOXA9
ACAUUCA	0.664
HMX1.p2	0.657	HMX1
MSX1,2.p2	0.651	MSX1 MSX2
FOX{C1,C2}.p2	0.618	FOXC1 FOXC2
AACAGUC	0.617
GCUGGUG	0.612
GFI1.p2	0.589	GFI1
ETS1,2.p2	0.589	ETS2 ETS1
RUNX1..3.p2	0.588	RUNX1 RUNX3 RUNX2
RORA.p2	0.583	RORA
POU1F1.p2	0.580	POU1F1
AUGACAC	0.545
STAT5{A,B}.p2	0.542	STAT5B STAT5A
GAGAUGA	0.534
PAX3,7.p2	0.532	PAX7 PAX3
AR.p2	0.530	AR
FOX{F1,F2,J1}.p2	0.528	FOXF2 FOXJ1 FOXF1
UGUGCGU	0.522
TFAP2{A,C}.p2	0.501	TFAP2C TFAP2A
ZNF423.p2	0.494	ZNF423
TEAD1.p2	0.487	TEAD1 TEAD2 TEAD3 TEAD4
TBP.p2	0.460	TBP
CGUGUCU	0.460
ACUGGCC	0.440
STAT1,3.p3	0.427	STAT1 STAT3
PAX6.p2	0.414	PAX6
GGAGUGU	0.398
GGACGGA	0.377
NKX2-1,4.p2	0.373	NKX2-1 NKX2-4
CEBPA,B_DDIT3.p2	0.362	DDIT3 CEBPA CEBPB
UAAGACU	0.346
GCUACAU	0.318
NKX3-2.p2	0.303	NKX3-2
ACUGCAU	0.277
CAGUGCA	0.276
GAGGUAG	0.269
MYBL2.p2	0.232	MYBL2
CCAGUGU	0.226
VSX1,2.p2	0.222	VSX2 VSX1
POU3F1..4.p2	0.219	POU3F1 POU3F3 POU3F2 POU3F4
UAUUGCU	0.205
AACACUG	0.201
ESR1.p2	0.178	ESR1
SNAI1..3.p2	0.176	SNAI2 SNAI1 SNAI3
FOX{D1,D2}.p2	0.173	FOXD2 FOXD1
FOXL1.p2	0.169	FOXL1
AIRE.p2	0.163	AIRE
PAX8.p2	0.161	PAX8
AACGGAA	0.096
HSF1,2.p2	0.066	HSF1 HSF2
AAUCUCU	0.059
NR6A1.p2	0.045	NR6A1
AGGUAGU	0.042
AGCUGCC	0.027
GZF1.p2	0.023	GZF1
NANOG{mouse}.p2	-0.007	NANOG
AGCAGCG	-0.008
ACCCGUA	-0.051
FOS_FOS{B,L1}_JUN{B,D}.p2	-0.080	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
HOX{A4,D4}.p2	-0.102	HOXA4 HOXD4
AACCGUU	-0.106
ARID5B.p2	-0.125	ARID5B
GUAGUGU	-0.127
CGUACCG	-0.148
GUAAACA	-0.153
CRX.p2	-0.168	CRX
NFE2L1.p2	-0.171	NFE2L1
NKX6-1,2.p2	-0.173	NKX6-1 NKX6-2
CCCUGAG	-0.218
ACCCUGU	-0.237
CCUUCAU	-0.273
UCACAGU	-0.309
UGAAAUG	-0.315
UUGUUCG	-0.317
POU6F1.p2	-0.320	POU6F1
T.p2	-0.324	T
ONECUT1,2.p2	-0.367	ONECUT2 ONECUT1
AAUGCCC	-0.367
AAUCUCA	-0.371
UGACCUA	-0.373
GAUAUGU	-0.396
DMAP1_NCOR{1,2}_SMARC.p2	-0.440	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
HNF1A.p2	-0.446	HNF1A
HLF.p2	-0.498	HLF
LHX3,4.p2	-0.519	LHX3 LHX4
AACCUGG	-0.553
ATF6.p2	-0.555	ATF6
FOSL2.p2	-0.562	FOSL2
UUUUUGC	-0.571
GFI1B.p2	-0.599	GFI1B
FOXA2.p3	-0.606	FOXA2
BPTF.p2	-0.611	BPTF
AUGGCAC	-0.643
GCAGCAU	-0.674
UCACAUU	-0.689
CDX1,2,4.p2	-0.725	CDX1 CDX2 CDX4
TLX2.p2	-0.748	TLX2
HES1.p2	-0.758	HES1
NFE2L2.p2	-0.758	NFE2L2
AUGUGCC	-0.765
NKX2-2,8.p2	-0.916	NKX2-2 NKX2-8
AGCUUAU	-0.981
BACH2.p2	-0.988	BACH2
ZEB1.p2	-0.998	ZEB1
AGUGGUU	-1.055
ZNF238.p2	-1.070	ZNF238
PATZ1.p2	-1.155	PATZ1
GATA6.p2	-1.209	GATA6
FOXN1.p2	-1.290	FOXN1
PRDM1.p3	-1.308	PRDM1
GUAACAG	-1.326
NFE2.p2	-1.349	NFE2
UCCAGUU	-1.436
ZNF148.p2	-1.447	ZNF148
ADNP_IRX_SIX_ZHX.p2	-1.472	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
TFAP2B.p2	-1.472	TFAP2B
RXRG_dimer.p3	-1.525	NR1H2 RXRA PPARG PPARA RXRB RXRG
RBPJ.p2	-1.547	RBPJ
ACAGUAC	-1.592
NFATC1..3.p2	-1.631	NFATC3 NFATC2 NFATC1
CREB1.p2	-1.656	CREB1
SRF.p3	-1.657	SRF
SOX5.p2	-1.667	SOX5
ZBTB16.p2	-1.695	ZBTB16
PAX5.p2	-1.741	PAX5
ACAGUAU	-1.753
TFAP4.p2	-1.847	TFAP4
FOXQ1.p2	-1.852	FOXQ1
HIF1A.p2	-1.853	HIF1A
AHR_ARNT_ARNT2.p2	-1.883	ARNT AHR ARNT2
UAAUGCU	-1.943
PPARG.p2	-1.955	PPARG
GGAAUGU	-1.977
GAUUGUC	-2.125
ATF4.p2	-2.170	ATF4
IRF1,2,7.p3	-2.235	IRF1 IRF2 IRF7
TP53.p2	-2.254	TP53
PBX1.p2	-2.261	PBX1
KLF4.p3	-2.286	KLF4
EP300.p2	-2.343	EP300
UUGGCAA	-2.354
AAGGCAC	-2.378
UCAAGUA	-2.384
NFKB1_REL_RELA.p2	-2.492	RELA REL NFKB1
AGCACCA	-2.518
FOXD3.p2	-2.647	FOXD3
ATF5_CREB3.p2	-2.967	ATF5 CREB3
CUUUGGU	-2.977
bHLH_family.p2	-3.142	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
SPIB.p2	-3.247	SPIB
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-3.249	ARNT MAX MYC USF1 BHLHB2 ARNT2
SOX17.p2	-3.255	SOX17
EHF.p2	-3.280	EHF
SPI1.p2	-3.523	SPI1
XBP1.p3	-3.556	XBP1
PITX1..3.p2	-4.089	PITX2 PITX3 PITX1
MYB.p2	-4.629	MYB
NRF1.p2	-4.697	NRF1
ZNF143.p2	-5.001	ZNF143
ELK1,4_GABP{A,B1}.p3	-5.330	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
ELF1,2,4.p2	-5.635	ELF2 ELF1 ELF4
TFDP1.p2	-5.781	TFDP1
NFY{A,B,C}.p2	-6.050	NFYC NFYB NFYA
YY1.p2	-6.734	YY1
E2F1..5.p2	-7.051	E2F4 E2F5 E2F2 E2F1 E2F3

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Sample name: GNF_2_caudatenucleus

Sorted z-values for every WM.