ISMARA results: GNF_2

Sample name: GNF_2_fetalThyroid

Sorted Z-values histogram for the sample GNF_2_fetalThyroid

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
TBP.p2	5.413	TBP
TEAD1.p2	4.882	TEAD1 TEAD2 TEAD3 TEAD4
TLX1..3_NFIC{dimer}.p2	3.806	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
TLX2.p2	3.444	TLX2
RREB1.p2	3.165	RREB1
ZNF384.p2	3.116	ZNF384
MTF1.p2	2.982	MTF1
TFCP2.p2	2.945	TFCP2
MYFfamily.p2	2.850	MYOD1 MYF6 MYF5 MYOG
TFAP4.p2	2.668	TFAP4
MEF2{A,B,C,D}.p2	2.486	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
AAGGUGC	2.469
CUCCCAA	2.450
SMAD1..7,9.p2	2.436	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
AGCACCA	2.328
CCAGUGU	2.291
GATA1..3.p2	2.233	GATA1 GATA2 GATA3
HIC1.p2	2.170	HIC1
GAGAUGA	2.148
ZNF238.p2	1.984	ZNF238
EOMES.p2	1.981	EOMES
MYOD1.p2	1.935	MYOD1
KLF12.p2	1.923	KLF12
CAGCAGG	1.873
SRF.p3	1.816	SRF
CACAGUG	1.786
MZF1.p2	1.758	MZF1
CDX1,2,4.p2	1.751	CDX1 CDX2 CDX4
FOX{C1,C2}.p2	1.743	FOXC1 FOXC2
NR1H4.p2	1.736	NR1H4
HOX{A5,B5}.p2	1.732	HOXB5 HOXA5
MYBL2.p2	1.639	MYBL2
UUGUUCG	1.575
RFX1..5_RFXANK_RFXAP.p2	1.574	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
FOXO1,3,4.p2	1.553	FOXO1 FOXO4 FOXO3
MAZ.p2	1.530	MAZ
MSX1,2.p2	1.520	MSX1 MSX2
CUUUGGU	1.453
STAT2,4,6.p2	1.435	STAT2 STAT4 STAT6
ACAGUAU	1.419
STAT1,3.p3	1.411	STAT1 STAT3
SP1.p2	1.410	SP1
POU3F1..4.p2	1.409	POU3F1 POU3F3 POU3F2 POU3F4
NANOG{mouse}.p2	1.395	NANOG
TFAP2{A,C}.p2	1.373	TFAP2C TFAP2A
GGCUCAG	1.361
AGCUUAU	1.331
PAX2.p2	1.304	PAX2
FOX{D1,D2}.p2	1.297	FOXD2 FOXD1
NHLH1,2.p2	1.287	NHLH1 NHLH2
EN1,2.p2	1.261	EN1 EN2
UGUGCUU	1.250
ZEB1.p2	1.239	ZEB1
NR5A1,2.p2	1.227	NR5A1 NR5A2
SNAI1..3.p2	1.221	SNAI2 SNAI1 SNAI3
IKZF2.p2	1.212	IKZF2
AAGGCAC	1.201
JUN.p2	1.195	JUN JUND JUNB
RBPJ.p2	1.188	RBPJ
UGAAAUG	1.186
CREB1.p2	1.180	CREB1
HNF1A.p2	1.175	HNF1A
PITX1..3.p2	1.175	PITX2 PITX3 PITX1
PRDM1.p3	1.150	PRDM1
NFIX.p2	1.113	NFIX
GAGAACU	1.083
AAUACUG	1.064
CDC5L.p2	1.064	CDC5L
TCF4_dimer.p2	1.051	TCF4
XBP1.p3	1.049	XBP1
CCAGCAU	1.038
TFEB.p2	1.031	TFEB
POU5F1.p2	1.020	POU5F1
ATF6.p2	1.014	ATF6
NKX6-1,2.p2	0.990	NKX6-1 NKX6-2
NKX2-1,4.p2	0.951	NKX2-1 NKX2-4
FOS_FOS{B,L1}_JUN{B,D}.p2	0.944	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
RXR{A,B,G}.p2	0.943	RXRA RXRB RXRG
GTF2A1,2.p2	0.941	GTF2A1 GTF2A2
RORA.p2	0.881	RORA
ETS1,2.p2	0.871	ETS2 ETS1
NKX2-3_NKX2-5.p2	0.870	NKX2-5 NKX2-3
FOXP3.p2	0.812	FOXP3
NR4A2.p2	0.799	NR4A2
HBP1_HMGB_SSRP1_UBTF.p2	0.794	HMGB2 HMGB3 SSRP1 UBTF HBP1
CGUACCG	0.765
GGCAAGA	0.764
HOX{A6,A7,B6,B7}.p2	0.758	HOXB6 HOXA7 HOXB7 HOXA6
GTF2I.p2	0.739	GTF2I
SRY.p2	0.722	SRY
GCUGGUG	0.718
GGACGGA	0.702
EVI1.p2	0.700	EVI1
HOXA9_MEIS1.p2	0.699	MEIS1 HOXA9
FOX{I1,J2}.p2	0.689	FOXI1 FOXJ2
HLF.p2	0.682	HLF
HNF4A_NR2F1,2.p2	0.665	NR2F1 NR2F2 HNF4A
TGIF1.p2	0.664	TGIF1
ZNF148.p2	0.649	ZNF148
POU6F1.p2	0.648	POU6F1
ESR1.p2	0.629	ESR1
TFAP2B.p2	0.608	TFAP2B
ATF2.p2	0.597	ATF2
UCCCUUU	0.590
ACAGUAC	0.577
CRX.p2	0.569	CRX
TAL1_TCF{3,4,12}.p2	0.553	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
HMX1.p2	0.524	HMX1
GFI1B.p2	0.514	GFI1B
UCCAGUU	0.512
VSX1,2.p2	0.507	VSX2 VSX1
AHR_ARNT_ARNT2.p2	0.504	ARNT AHR ARNT2
UGACCUA	0.473
UAAGACU	0.470
CCCUGAG	0.465
HAND1,2.p2	0.433	HAND1 HAND2
CGUGUCU	0.408
AGUGGUU	0.358
UGUGCGU	0.336
FOSL2.p2	0.333	FOSL2
SREBF1,2.p2	0.320	SREBF1 SREBF2
UUGGCAC	0.318
PAX8.p2	0.318	PAX8
ACUGGCC	0.305
TBX4,5.p2	0.283	TBX5 TBX4
AAUGCCC	0.266
FOXQ1.p2	0.213	FOXQ1
UGCAUAG	0.204
IKZF1.p2	0.196	IKZF1
GUAGUGU	0.186
HOX{A4,D4}.p2	0.181	HOXA4 HOXD4
NR3C1.p2	0.179	NR3C1
SOX5.p2	0.176	SOX5
PAX4.p2	0.175	PAX4
PAX6.p2	0.169	PAX6
GAUUGUC	0.165
ZFP161.p2	0.162	ZFP161
AGUGCAA	0.151
DBP.p2	0.143	DBP
NFATC1..3.p2	0.132	NFATC3 NFATC2 NFATC1
AAUCUCU	0.103
FOXA2.p3	0.078	FOXA2
FOXL1.p2	0.067	FOXL1
ACCCUGU	0.059
PAX3,7.p2	0.039	PAX7 PAX3
ACCCGUA	0.019
AUGUGCC	0.009
STAT5{A,B}.p2	0.003	STAT5B STAT5A
GLI1..3.p2	-0.001	GLI1 GLI2 GLI3
UAAUGCU	-0.003
EP300.p2	-0.007	EP300
EWSR1-FLI1.p2	-0.013	FLI1 EWSR1
GZF1.p2	-0.040	GZF1
AAGUGCU	-0.044
ZNF423.p2	-0.049	ZNF423
AAUCUCA	-0.055
UUUUUGC	-0.084
AACCUGG	-0.100
LEF1_TCF7_TCF7L1,2.p2	-0.106	TCF7 TCF7L2 LEF1 TCF7L1
NR6A1.p2	-0.119	NR6A1
AUGACAC	-0.136
FEV.p2	-0.141	FEV
POU1F1.p2	-0.146	POU1F1
KLF4.p3	-0.157	KLF4
SOX17.p2	-0.164	SOX17
AR.p2	-0.174	AR
CAGUGCA	-0.183
CCUUCAU	-0.188
AGCAGCG	-0.199
GGAAGAC	-0.207
AUGGCAC	-0.231
T.p2	-0.271	T
AAAGUGC	-0.281
AACCGUU	-0.304
ARID5B.p2	-0.307	ARID5B
GAUAUGU	-0.316
GATA6.p2	-0.320	GATA6
GUAACAG	-0.321
GAGGUAG	-0.349
SPZ1.p2	-0.370	SPZ1
AGCAGCA	-0.379
EBF1.p2	-0.410	EBF1
ZBTB6.p2	-0.414	ZBTB6
GGAGUGU	-0.425
UAUUGCU	-0.448
UUGGCAA	-0.475
UGCAUUG	-0.480
NANOG.p2	-0.509	NANOG
EHF.p2	-0.532	EHF
NFKB1_REL_RELA.p2	-0.539	RELA REL NFKB1
ADNP_IRX_SIX_ZHX.p2	-0.548	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
PPARG.p2	-0.554	PPARG
CUACAGU	-0.555
GUGCAAA	-0.563
UAAGACG	-0.573
AACGGAA	-0.577
GGCAGUG	-0.600
AUGGCUU	-0.602
HMGA1,2.p2	-0.607	HMGA1 HMGA2
BACH2.p2	-0.611	BACH2
UUGGUCC	-0.636
CUX2.p2	-0.640	CUX2
ZIC1..3.p2	-0.644	ZIC1 ZIC2 ZIC3
GAUCAGA	-0.670
ACUGCAU	-0.701
RUNX1..3.p2	-0.715	RUNX1 RUNX3 RUNX2
FOXD3.p2	-0.733	FOXD3
GUCAGUU	-0.743
BPTF.p2	-0.757	BPTF
SOX{8,9,10}.p2	-0.775	SOX9 SOX8 SOX10
PDX1.p2	-0.777	PDX1
POU2F1..3.p2	-0.785	POU2F2 POU2F1 POU2F3
LHX3,4.p2	-0.800	LHX3 LHX4
TP53.p2	-0.820	TP53
FOX{F1,F2,J1}.p2	-0.827	FOXF2 FOXJ1 FOXF1
RXRA_VDR{dimer}.p2	-0.831	VDR	$logo of RXRA_VDR{dimer}.p2$
CEBPA,B_DDIT3.p2	-0.862	DDIT3 CEBPA CEBPB
AACACUG	-0.877
GCUACAU	-0.899
PRRX1,2.p2	-0.921	PRRX2 PRRX1
AIRE.p2	-0.930	AIRE
RXRG_dimer.p3	-0.948	NR1H2 RXRA PPARG PPARA RXRB RXRG
POU5F1_SOX2{dimer}.p2	-0.995	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
NFE2L1.p2	-1.061	NFE2L1
AGGUAGU	-1.063
LMO2.p2	-1.111	LMO2
ONECUT1,2.p2	-1.134	ONECUT2 ONECUT1
SOX2.p2	-1.136	SOX2
AUUGCAC	-1.191
REST.p3	-1.222	REST
GGAAUGU	-1.230
ALX1.p2	-1.247	ALX1
GFI1.p2	-1.322	GFI1
FOXN1.p2	-1.378	FOXN1
GUAAACA	-1.438
NFIL3.p2	-1.445	NFIL3
SPIB.p2	-1.480	SPIB
NFE2.p2	-1.516	NFE2
CTCF.p2	-1.549	CTCF
ACAUUCA	-1.568
ATF4.p2	-1.587	ATF4
NKX3-1.p2	-1.624	NKX3-1
DMAP1_NCOR{1,2}_SMARC.p2	-1.630	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
EGR1..3.p2	-1.632	EGR3 EGR1 EGR2
PBX1.p2	-1.645	PBX1
NKX3-2.p2	-1.658	NKX3-2
MAFB.p2	-1.770	MAFB
PATZ1.p2	-1.850	PATZ1
ESRRA.p2	-1.891	ESRRA
UCACAGU	-1.896
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-1.900	ARNT MAX MYC USF1 BHLHB2 ARNT2
GCAGCAU	-1.937
AGCUGCC	-2.001
UCAAGUA	-2.083
ELF1,2,4.p2	-2.236	ELF2 ELF1 ELF4
NKX2-2,8.p2	-2.283	NKX2-2 NKX2-8
HSF1,2.p2	-2.287	HSF1 HSF2
UCACAUU	-2.298
ZBTB16.p2	-2.380	ZBTB16
AACAGUC	-2.473
PAX5.p2	-2.539	PAX5
NFE2L2.p2	-2.708	NFE2L2
ZNF143.p2	-3.196	ZNF143
ELK1,4_GABP{A,B1}.p3	-3.237	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
HES1.p2	-3.272	HES1
SPI1.p2	-3.316	SPI1
HIF1A.p2	-3.360	HIF1A
IRF1,2,7.p3	-3.509	IRF1 IRF2 IRF7
bHLH_family.p2	-3.737	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
YY1.p2	-3.813	YY1
NFY{A,B,C}.p2	-4.125	NFYC NFYB NFYA
NRF1.p2	-4.349	NRF1
TFDP1.p2	-4.427	TFDP1
ATF5_CREB3.p2	-5.026	ATF5 CREB3
MYB.p2	-6.651	MYB
E2F1..5.p2	-9.062	E2F4 E2F5 E2F2 E2F1 E2F3

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Sample name: GNF_2_fetalThyroid

Sorted z-values for every WM.