ISMARA results: GNF_2

Sample name: GNF_2_kidney

Sorted Z-values histogram for the sample GNF_2_kidney

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
HNF1A.p2	11.944	HNF1A
HNF4A_NR2F1,2.p2	9.432	NR2F1 NR2F2 HNF4A
CAGCAGG	4.919
MYFfamily.p2	4.430	MYOD1 MYF6 MYF5 MYOG
SMAD1..7,9.p2	3.877	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
TGIF1.p2	3.747	TGIF1
TBP.p2	3.540	TBP
SNAI1..3.p2	3.383	SNAI2 SNAI1 SNAI3
TEAD1.p2	3.235	TEAD1 TEAD2 TEAD3 TEAD4
TLX1..3_NFIC{dimer}.p2	3.181	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
RREB1.p2	3.179	RREB1
MYOD1.p2	3.141	MYOD1
NANOG{mouse}.p2	3.038	NANOG
CCCUGAG	2.941
MTF1.p2	2.941	MTF1
NR5A1,2.p2	2.921	NR5A1 NR5A2
CRX.p2	2.813	CRX
FOXP3.p2	2.706	FOXP3
NFIX.p2	2.703	NFIX
AAAGUGC	2.560
EBF1.p2	2.543	EBF1
TFEB.p2	2.491	TFEB
NR4A2.p2	2.451	NR4A2
CUUUGGU	2.441
ADNP_IRX_SIX_ZHX.p2	2.412	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
UCCCUUU	2.372
FOX{C1,C2}.p2	2.286	FOXC1 FOXC2
EN1,2.p2	2.275	EN1 EN2
HIC1.p2	2.216	HIC1
FOSL2.p2	2.141	FOSL2
ESR1.p2	2.077	ESR1
HOX{A5,B5}.p2	2.018	HOXB5 HOXA5
ATF2.p2	2.012	ATF2
NFKB1_REL_RELA.p2	2.007	RELA REL NFKB1
HLF.p2	1.993	HLF
GATA6.p2	1.989	GATA6
GAGAUGA	1.971
UUGUUCG	1.878
SP1.p2	1.876	SP1
HAND1,2.p2	1.872	HAND1 HAND2
GGCUCAG	1.856
FOXA2.p3	1.830	FOXA2
MAZ.p2	1.787	MAZ
NFE2L1.p2	1.776	NFE2L1
MSX1,2.p2	1.737	MSX1 MSX2
PPARG.p2	1.678	PPARG
CACAGUG	1.670
TFCP2.p2	1.658	TFCP2
NKX3-1.p2	1.640	NKX3-1
POU2F1..3.p2	1.614	POU2F2 POU2F1 POU2F3
UUGGCAC	1.577
FOX{D1,D2}.p2	1.571	FOXD2 FOXD1
GGCAAGA	1.560
GGCAGUG	1.530
IKZF1.p2	1.500	IKZF1
JUN.p2	1.478	JUN JUND JUNB
DBP.p2	1.472	DBP
NHLH1,2.p2	1.426	NHLH1 NHLH2
RUNX1..3.p2	1.418	RUNX1 RUNX3 RUNX2
ETS1,2.p2	1.392	ETS2 ETS1
SREBF1,2.p2	1.372	SREBF1 SREBF2
ZFP161.p2	1.311	ZFP161
HOXA9_MEIS1.p2	1.262	MEIS1 HOXA9
GTF2I.p2	1.219	GTF2I
GTF2A1,2.p2	1.207	GTF2A1 GTF2A2
EP300.p2	1.200	EP300
SPZ1.p2	1.110	SPZ1
RXR{A,B,G}.p2	1.105	RXRA RXRB RXRG
UAUUGCU	1.096
NR1H4.p2	1.092	NR1H4
EOMES.p2	1.073	EOMES
HBP1_HMGB_SSRP1_UBTF.p2	1.071	HMGB2 HMGB3 SSRP1 UBTF HBP1
NKX2-3_NKX2-5.p2	1.063	NKX2-5 NKX2-3
NKX2-1,4.p2	1.059	NKX2-1 NKX2-4
FOXO1,3,4.p2	1.046	FOXO1 FOXO4 FOXO3
EVI1.p2	1.040	EVI1
CCAGUGU	1.038
AAGGCAC	1.012
LMO2.p2	0.997	LMO2
CCAGCAU	0.994
TP53.p2	0.988	TP53
TFAP2{A,C}.p2	0.987	TFAP2C TFAP2A
STAT1,3.p3	0.977	STAT1 STAT3
RORA.p2	0.923	RORA
ZEB1.p2	0.920	ZEB1
AGCAGCG	0.908
REST.p3	0.905	REST
ZNF238.p2	0.897	ZNF238
HMGA1,2.p2	0.896	HMGA1 HMGA2
GGAAGAC	0.890
TBX4,5.p2	0.867	TBX5 TBX4
GAGAACU	0.851
ONECUT1,2.p2	0.834	ONECUT2 ONECUT1
POU3F1..4.p2	0.831	POU3F1 POU3F3 POU3F2 POU3F4
ACUGGCC	0.821
VSX1,2.p2	0.806	VSX2 VSX1
AGCAGCA	0.790
AR.p2	0.756	AR
GAUCAGA	0.746
EWSR1-FLI1.p2	0.726	FLI1 EWSR1
bHLH_family.p2	0.721	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
GGACGGA	0.718
HSF1,2.p2	0.700	HSF1 HSF2
TCF4_dimer.p2	0.678	TCF4
AAUGCCC	0.657
GAUUGUC	0.649
CUCCCAA	0.647
FOX{F1,F2,J1}.p2	0.627	FOXF2 FOXJ1 FOXF1
GAGGUAG	0.614
KLF12.p2	0.612	KLF12
LEF1_TCF7_TCF7L1,2.p2	0.599	TCF7 TCF7L2 LEF1 TCF7L1
POU6F1.p2	0.585	POU6F1
CGUGUCU	0.570
ESRRA.p2	0.562	ESRRA
SRF.p3	0.540	SRF
GUAGUGU	0.517
FOXD3.p2	0.508	FOXD3
GGAGUGU	0.506
UGCAUUG	0.458
POU1F1.p2	0.443	POU1F1
SOX5.p2	0.417	SOX5
UGCAUAG	0.405
POU5F1.p2	0.403	POU5F1
TFAP2B.p2	0.402	TFAP2B
T.p2	0.350	T
ACAGUAU	0.327
ATF6.p2	0.318	ATF6
CGUACCG	0.268
AUGACAC	0.265
PAX3,7.p2	0.231	PAX7 PAX3
NR3C1.p2	0.203	NR3C1
UCACAGU	0.203
PRDM1.p3	0.198	PRDM1
STAT5{A,B}.p2	0.190	STAT5B STAT5A
BACH2.p2	0.168	BACH2
GFI1B.p2	0.167	GFI1B
TAL1_TCF{3,4,12}.p2	0.138	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
POU5F1_SOX2{dimer}.p2	0.137	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
AUGUGCC	0.128
AIRE.p2	0.121	AIRE
CCUUCAU	0.117
NFIL3.p2	0.104	NFIL3
AAUCUCU	0.095
NR6A1.p2	0.085	NR6A1
RXRA_VDR{dimer}.p2	0.082	VDR	$logo of RXRA_VDR{dimer}.p2$
UGAAAUG	0.046
GUGCAAA	0.034
RFX1..5_RFXANK_RFXAP.p2	0.015	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
ACCCUGU	0.009
GLI1..3.p2	0.006	GLI1 GLI2 GLI3
AACGGAA	-0.011
PDX1.p2	-0.011	PDX1
ACCCGUA	-0.034
UGUGCGU	-0.041
DMAP1_NCOR{1,2}_SMARC.p2	-0.058	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
AAGGUGC	-0.059
AACAGUC	-0.077
GUAACAG	-0.084
TFAP4.p2	-0.091	TFAP4
HOX{A6,A7,B6,B7}.p2	-0.096	HOXB6 HOXA7 HOXB7 HOXA6
UAAGACU	-0.129
PAX2.p2	-0.129	PAX2
HMX1.p2	-0.144	HMX1
PAX8.p2	-0.158	PAX8
RXRG_dimer.p3	-0.188	NR1H2 RXRA PPARG PPARA RXRB RXRG
UCCAGUU	-0.194
ZNF384.p2	-0.212	ZNF384
ZIC1..3.p2	-0.212	ZIC1 ZIC2 ZIC3
AACCGUU	-0.230
AAUCUCA	-0.232
ZNF423.p2	-0.233	ZNF423
SRY.p2	-0.266	SRY
CUACAGU	-0.267
AGCUGCC	-0.270
UGACCUA	-0.286
UAAUGCU	-0.297
BPTF.p2	-0.300	BPTF
KLF4.p3	-0.301	KLF4
GZF1.p2	-0.305	GZF1
ZBTB6.p2	-0.313	ZBTB6
AGCUUAU	-0.351
ARID5B.p2	-0.373	ARID5B
UGUGCUU	-0.440
MEF2{A,B,C,D}.p2	-0.452	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
PBX1.p2	-0.477	PBX1
RBPJ.p2	-0.504	RBPJ
GCUACAU	-0.517
GAUAUGU	-0.521
UUGGUCC	-0.530
AGUGCAA	-0.557
AUGGCAC	-0.569
UAAGACG	-0.583
GCAGCAU	-0.632
FOXL1.p2	-0.663	FOXL1
GATA1..3.p2	-0.685	GATA1 GATA2 GATA3
FOS_FOS{B,L1}_JUN{B,D}.p2	-0.689	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
HES1.p2	-0.702	HES1
PAX6.p2	-0.704	PAX6
AAGUGCU	-0.724
FEV.p2	-0.746	FEV
PATZ1.p2	-0.769	PATZ1
FOX{I1,J2}.p2	-0.783	FOXI1 FOXJ2
NKX6-1,2.p2	-0.814	NKX6-1 NKX6-2
FOXQ1.p2	-0.819	FOXQ1
LHX3,4.p2	-0.847	LHX3 LHX4
ACUGCAU	-0.860
NANOG.p2	-0.871	NANOG
AHR_ARNT_ARNT2.p2	-0.872	ARNT AHR ARNT2
SOX{8,9,10}.p2	-0.893	SOX9 SOX8 SOX10
GUCAGUU	-0.896
MYBL2.p2	-0.897	MYBL2
CREB1.p2	-0.935	CREB1
AACCUGG	-0.948
PAX4.p2	-0.967	PAX4
AUUGCAC	-0.987
CDX1,2,4.p2	-1.038	CDX1 CDX2 CDX4
CDC5L.p2	-1.076	CDC5L
CEBPA,B_DDIT3.p2	-1.079	DDIT3 CEBPA CEBPB
UUGGCAA	-1.100
ACAGUAC	-1.103
ALX1.p2	-1.113	ALX1
CUX2.p2	-1.139	CUX2
IRF1,2,7.p3	-1.167	IRF1 IRF2 IRF7
AGGUAGU	-1.176
FOXN1.p2	-1.211	FOXN1
AUGGCUU	-1.222
UUUUUGC	-1.349
NFE2.p2	-1.357	NFE2
NFATC1..3.p2	-1.386	NFATC3 NFATC2 NFATC1
ATF4.p2	-1.446	ATF4
MZF1.p2	-1.448	MZF1
IKZF2.p2	-1.471	IKZF2
TLX2.p2	-1.473	TLX2
STAT2,4,6.p2	-1.511	STAT2 STAT4 STAT6
AAUACUG	-1.579
SOX2.p2	-1.597	SOX2
AACACUG	-1.613
GCUGGUG	-1.702
MAFB.p2	-1.762	MAFB
CAGUGCA	-1.797
NKX3-2.p2	-1.797	NKX3-2
NFY{A,B,C}.p2	-1.827	NFYC NFYB NFYA
HIF1A.p2	-1.828	HIF1A
AGUGGUU	-1.863
XBP1.p3	-1.917	XBP1
ACAUUCA	-1.991
PITX1..3.p2	-2.049	PITX2 PITX3 PITX1
AGCACCA	-2.050
HOX{A4,D4}.p2	-2.069	HOXA4 HOXD4
NKX2-2,8.p2	-2.084	NKX2-2 NKX2-8
CTCF.p2	-2.152	CTCF
SOX17.p2	-2.223	SOX17
SPI1.p2	-2.363	SPI1
EHF.p2	-2.433	EHF
PAX5.p2	-2.460	PAX5
ZBTB16.p2	-2.483	ZBTB16
SPIB.p2	-2.616	SPIB
GFI1.p2	-2.651	GFI1
EGR1..3.p2	-2.697	EGR3 EGR1 EGR2
PRRX1,2.p2	-2.801	PRRX2 PRRX1
UCACAUU	-2.809
ELF1,2,4.p2	-2.996	ELF2 ELF1 ELF4
NFE2L2.p2	-3.078	NFE2L2
UCAAGUA	-3.278
ZNF148.p2	-3.310	ZNF148
GGAAUGU	-3.655
GUAAACA	-3.739
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-4.325	ARNT MAX MYC USF1 BHLHB2 ARNT2
YY1.p2	-5.060	YY1
ELK1,4_GABP{A,B1}.p3	-5.083	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
ATF5_CREB3.p2	-5.194	ATF5 CREB3
MYB.p2	-6.049	MYB
ZNF143.p2	-6.604	ZNF143
NRF1.p2	-8.101	NRF1
E2F1..5.p2	-8.952	E2F4 E2F5 E2F2 E2F1 E2F3
TFDP1.p2	-9.211	TFDP1

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Sample name: GNF_2_kidney

Sorted z-values for every WM.