ISMARA results: GNF_2_subthalamicnucleus

Sample name: GNF_2_subthalamicnucleus

Sorted Z-values histogram for the sample GNF_2_subthalamicnucleus

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
CUCCCAA	7.198
RFX1..5_RFXANK_RFXAP.p2	6.292	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
REST.p3	6.110	REST
KLF12.p2	5.498	KLF12
UGUGCUU	5.348
UUUUUGC	4.829
RREB1.p2	4.797	RREB1
JUN.p2	4.548	JUN JUND JUNB
GGCAGUG	4.431
MTF1.p2	3.997	MTF1
GATA1..3.p2	3.996	GATA1 GATA2 GATA3
MZF1.p2	3.897	MZF1
MYOD1.p2	3.828	MYOD1
GTF2I.p2	3.820	GTF2I
HIC1.p2	3.701	HIC1
EGR1..3.p2	3.644	EGR3 EGR1 EGR2
TGIF1.p2	3.521	TGIF1
NKX2-3_NKX2-5.p2	3.305	NKX2-5 NKX2-3
TAL1_TCF{3,4,12}.p2	3.266	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
NHLH1,2.p2	3.221	NHLH1 NHLH2
HOX{A6,A7,B6,B7}.p2	3.163	HOXB6 HOXA7 HOXB7 HOXA6
MAFB.p2	3.151	MAFB
POU5F1.p2	3.134	POU5F1
GGCUCAG	3.097
SMAD1..7,9.p2	3.070	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
ALX1.p2	2.993	ALX1
EVI1.p2	2.918	EVI1
EBF1.p2	2.891	EBF1
TBX4,5.p2	2.762	TBX5 TBX4
TCF4_dimer.p2	2.758	TCF4
ZIC1..3.p2	2.737	ZIC1 ZIC2 ZIC3
ZFP161.p2	2.704	ZFP161
PAX2.p2	2.638	PAX2
UCCCUUU	2.521
GTF2A1,2.p2	2.509	GTF2A1 GTF2A2
MEF2{A,B,C,D}.p2	2.414	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
AAAGUGC	2.396
UGCAUAG	2.352
AUGGCUU	2.341
ACAUUCA	2.291
IKZF2.p2	2.276	IKZF2
DBP.p2	2.256	DBP
GUGCAAA	2.176
CAGCAGG	2.121
TFCP2.p2	2.116	TFCP2
ATF2.p2	2.096	ATF2
GGAAGAC	2.087
FOX{I1,J2}.p2	2.085	FOXI1 FOXJ2
SRY.p2	2.055	SRY
PAX4.p2	2.009	PAX4
FOXP3.p2	1.987	FOXP3
UUGGUCC	1.906
STAT2,4,6.p2	1.900	STAT2 STAT4 STAT6
NR1H4.p2	1.871	NR1H4
POU1F1.p2	1.864	POU1F1
GUCAGUU	1.855
GUAAACA	1.799
LEF1_TCF7_TCF7L1,2.p2	1.783	TCF7 TCF7L2 LEF1 TCF7L1
HOX{A5,B5}.p2	1.764	HOXB5 HOXA5
AAUACUG	1.756
FEV.p2	1.739	FEV
STAT1,3.p3	1.725	STAT1 STAT3
MAZ.p2	1.709	MAZ
CCAGCAU	1.669
CUACAGU	1.657
SOX{8,9,10}.p2	1.607	SOX9 SOX8 SOX10
SPZ1.p2	1.581	SPZ1
TLX1..3_NFIC{dimer}.p2	1.573	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
GLI1..3.p2	1.565	GLI1 GLI2 GLI3
NR4A2.p2	1.565	NR4A2
GCUGGUG	1.537
EWSR1-FLI1.p2	1.523	FLI1 EWSR1
GGCAAGA	1.443
GAGAUGA	1.438
PRRX1,2.p2	1.422	PRRX2 PRRX1
GAGAACU	1.417
UAUUGCU	1.414
STAT5{A,B}.p2	1.353	STAT5B STAT5A
IKZF1.p2	1.350	IKZF1
LHX3,4.p2	1.347	LHX3 LHX4
LMO2.p2	1.347	LMO2
SNAI1..3.p2	1.321	SNAI2 SNAI1 SNAI3
HAND1,2.p2	1.307	HAND1 HAND2
GFI1.p2	1.302	GFI1
AAGUGCU	1.300
HMX1.p2	1.295	HMX1
UGAAAUG	1.264
AUUGCAC	1.237
SOX2.p2	1.229	SOX2
AGUGCAA	1.152
CACAGUG	1.146
RXR{A,B,G}.p2	1.145	RXRA RXRB RXRG
UAAGACG	1.130
NANOG{mouse}.p2	1.061	NANOG
NR5A1,2.p2	1.043	NR5A1 NR5A2
NFIL3.p2	1.017	NFIL3
TLX2.p2	1.009	TLX2
ZEB1.p2	0.958	ZEB1
UCACAGU	0.952
FOXL1.p2	0.925	FOXL1
UUGGCAC	0.887
AGGUAGU	0.856
ZBTB6.p2	0.850	ZBTB6
SOX5.p2	0.776	SOX5
FOXO1,3,4.p2	0.741	FOXO1 FOXO4 FOXO3
MYFfamily.p2	0.738	MYOD1 MYF6 MYF5 MYOG
CGUGUCU	0.733
ACUGGCC	0.729
GAUCAGA	0.697
HNF4A_NR2F1,2.p2	0.615	NR2F1 NR2F2 HNF4A
PAX3,7.p2	0.604	PAX7 PAX3
GCAGCAU	0.597
RUNX1..3.p2	0.592	RUNX1 RUNX3 RUNX2
NFE2.p2	0.583	NFE2
CDC5L.p2	0.561	CDC5L
RORA.p2	0.552	RORA
AAUCUCU	0.539
UGUGCGU	0.526
UGCAUUG	0.521
SREBF1,2.p2	0.501	SREBF1 SREBF2
AIRE.p2	0.472	AIRE
RXRA_VDR{dimer}.p2	0.467	VDR	$logo of RXRA_VDR{dimer}.p2$
CTCF.p2	0.459	CTCF
AACAGUC	0.453
AGCAGCG	0.437
UAAGACU	0.425
PAX6.p2	0.388	PAX6
HLF.p2	0.387	HLF
AUGACAC	0.383
NANOG.p2	0.362	NANOG
HMGA1,2.p2	0.346	HMGA1 HMGA2
NKX6-1,2.p2	0.330	NKX6-1 NKX6-2
NR3C1.p2	0.328	NR3C1
ACUGCAU	0.307
GGACGGA	0.293
UUGGCAA	0.288
GCUACAU	0.284
TFAP2B.p2	0.280	TFAP2B
GZF1.p2	0.278	GZF1
CUX2.p2	0.275	CUX2
TFEB.p2	0.273	TFEB
NKX2-1,4.p2	0.273	NKX2-1 NKX2-4
HBP1_HMGB_SSRP1_UBTF.p2	0.259	HMGB2 HMGB3 SSRP1 UBTF HBP1
ACCCUGU	0.257
PDX1.p2	0.249	PDX1
FOX{F1,F2,J1}.p2	0.238	FOXF2 FOXJ1 FOXF1
NR6A1.p2	0.236	NR6A1
ZNF423.p2	0.205	ZNF423
CAGUGCA	0.203
AACGGAA	0.171
HSF1,2.p2	0.170	HSF1 HSF2
PAX8.p2	0.146	PAX8
POU3F1..4.p2	0.099	POU3F1 POU3F3 POU3F2 POU3F4
UUGUUCG	0.089
AGCUGCC	0.089
NFIX.p2	0.087	NFIX
GATA6.p2	0.084	GATA6
FOX{D1,D2}.p2	0.078	FOXD2 FOXD1
ETS1,2.p2	0.070	ETS2 ETS1
AR.p2	0.057	AR
NFE2L1.p2	0.046	NFE2L1
AAGGUGC	0.032
ESRRA.p2	0.022	ESRRA
TEAD1.p2	0.003	TEAD1 TEAD2 TEAD3 TEAD4
FOX{C1,C2}.p2	-0.025	FOXC1 FOXC2
CGUACCG	-0.029
UGACCUA	-0.038
ACCCGUA	-0.045
AACCGUU	-0.057
CEBPA,B_DDIT3.p2	-0.058	DDIT3 CEBPA CEBPB
GAUAUGU	-0.061
AGCAGCA	-0.085
AACACUG	-0.139
AAUCUCA	-0.147
POU5F1_SOX2{dimer}.p2	-0.156	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
CDX1,2,4.p2	-0.166	CDX1 CDX2 CDX4
HOXA9_MEIS1.p2	-0.192	MEIS1 HOXA9
CCCUGAG	-0.199
EN1,2.p2	-0.218	EN1 EN2
ARID5B.p2	-0.250	ARID5B
NKX3-1.p2	-0.260	NKX3-1
MYBL2.p2	-0.265	MYBL2
CRX.p2	-0.267	CRX
GFI1B.p2	-0.282	GFI1B
SP1.p2	-0.283	SP1
ESR1.p2	-0.289	ESR1
HNF1A.p2	-0.365	HNF1A
GAGGUAG	-0.378
HOX{A4,D4}.p2	-0.381	HOXA4 HOXD4
PAX5.p2	-0.384	PAX5
MSX1,2.p2	-0.407	MSX1 MSX2
AGCUUAU	-0.410
VSX1,2.p2	-0.421	VSX2 VSX1
UCACAUU	-0.422
GGAGUGU	-0.426
POU6F1.p2	-0.433	POU6F1
ZNF238.p2	-0.436	ZNF238
AAUGCCC	-0.443
FOSL2.p2	-0.501	FOSL2
DMAP1_NCOR{1,2}_SMARC.p2	-0.525	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
AUGGCAC	-0.566
T.p2	-0.584	T
NFATC1..3.p2	-0.591	NFATC3 NFATC2 NFATC1
EOMES.p2	-0.616	EOMES
AACCUGG	-0.640
FOS_FOS{B,L1}_JUN{B,D}.p2	-0.647	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
HES1.p2	-0.826	HES1
IRF1,2,7.p3	-0.838	IRF1 IRF2 IRF7
CCUUCAU	-0.841
GAUUGUC	-0.932
RBPJ.p2	-1.015	RBPJ
ADNP_IRX_SIX_ZHX.p2	-1.030	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
ACAGUAC	-1.043
GUAACAG	-1.051
AGUGGUU	-1.054
SPIB.p2	-1.054	SPIB
ZBTB16.p2	-1.076	ZBTB16
TFAP4.p2	-1.155	TFAP4
AUGUGCC	-1.160
NKX3-2.p2	-1.189	NKX3-2
PRDM1.p3	-1.243	PRDM1
POU2F1..3.p2	-1.249	POU2F2 POU2F1 POU2F3
ZNF384.p2	-1.297	ZNF384
ATF6.p2	-1.363	ATF6
PBX1.p2	-1.380	PBX1
CCAGUGU	-1.387
FOXQ1.p2	-1.391	FOXQ1
UCCAGUU	-1.408
GUAGUGU	-1.441
HIF1A.p2	-1.519	HIF1A
FOXN1.p2	-1.700	FOXN1
SOX17.p2	-1.709	SOX17
FOXD3.p2	-1.710	FOXD3
NFE2L2.p2	-1.742	NFE2L2
PPARG.p2	-1.763	PPARG
CREB1.p2	-1.771	CREB1
NKX2-2,8.p2	-1.817	NKX2-2 NKX2-8
UCAAGUA	-1.827
TFAP2{A,C}.p2	-1.920	TFAP2C TFAP2A
ONECUT1,2.p2	-1.945	ONECUT2 ONECUT1
FOXA2.p3	-1.951	FOXA2
UAAUGCU	-1.971
EP300.p2	-2.053	EP300
PATZ1.p2	-2.127	PATZ1
TBP.p2	-2.134	TBP
ZNF148.p2	-2.144	ZNF148
AGCACCA	-2.180
ATF4.p2	-2.219	ATF4
AHR_ARNT_ARNT2.p2	-2.353	ARNT AHR ARNT2
PITX1..3.p2	-2.459	PITX2 PITX3 PITX1
RXRG_dimer.p3	-2.476	NR1H2 RXRA PPARG PPARA RXRB RXRG
BACH2.p2	-2.509	BACH2
ACAGUAU	-2.519
TP53.p2	-2.521	TP53
SRF.p3	-2.547	SRF
ATF5_CREB3.p2	-2.784	ATF5 CREB3
KLF4.p3	-2.841	KLF4
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-2.865	ARNT MAX MYC USF1 BHLHB2 ARNT2
BPTF.p2	-2.882	BPTF
GGAAUGU	-2.936
bHLH_family.p2	-3.054	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
CUUUGGU	-3.066
NFKB1_REL_RELA.p2	-3.099	RELA REL NFKB1
EHF.p2	-3.277	EHF
MYB.p2	-3.665	MYB
ZNF143.p2	-3.842	ZNF143
SPI1.p2	-4.194	SPI1
ELK1,4_GABP{A,B1}.p3	-4.510	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
TFDP1.p2	-4.944	TFDP1
XBP1.p3	-5.270	XBP1
NRF1.p2	-5.418	NRF1
AAGGCAC	-5.827
E2F1..5.p2	-6.036	E2F4 E2F5 E2F2 E2F1 E2F3
ELF1,2,4.p2	-7.414	ELF2 ELF1 ELF4
NFY{A,B,C}.p2	-7.829	NFYC NFYB NFYA
YY1.p2	-8.698	YY1

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Sample name: GNF_2_subthalamicnucleus

Sorted z-values for every WM.