ISMARA results: GNF_2

Sample name: GNF_2_thymus

Sorted Z-values histogram for the sample GNF_2_thymus

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
POU2F1..3.p2	7.024	POU2F2 POU2F1 POU2F3
FOSL2.p2	4.511	FOSL2
POU5F1.p2	4.276	POU5F1
NFKB1_REL_RELA.p2	4.231	RELA REL NFKB1
RUNX1..3.p2	4.142	RUNX1 RUNX3 RUNX2
PITX1..3.p2	4.122	PITX2 PITX3 PITX1
TBP.p2	3.898	TBP
AR.p2	3.832	AR
NR3C1.p2	3.755	NR3C1
NFY{A,B,C}.p2	3.700	NFYC NFYB NFYA
HAND1,2.p2	3.447	HAND1 HAND2
E2F1..5.p2	3.261	E2F4 E2F5 E2F2 E2F1 E2F3
TFDP1.p2	3.206	TFDP1
SPIB.p2	3.193	SPIB
GAUUGUC	3.146
SOX17.p2	3.122	SOX17
SPI1.p2	3.094	SPI1
POU6F1.p2	2.654	POU6F1
NKX3-2.p2	2.561	NKX3-2
ETS1,2.p2	2.531	ETS2 ETS1
GGCAGUG	2.509
IRF1,2,7.p3	2.481	IRF1 IRF2 IRF7
YY1.p2	2.465	YY1
FOX{C1,C2}.p2	2.458	FOXC1 FOXC2
TGIF1.p2	2.449	TGIF1
EP300.p2	2.438	EP300
FOX{D1,D2}.p2	2.427	FOXD2 FOXD1
MEF2{A,B,C,D}.p2	2.403	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
PAX4.p2	2.380	PAX4
KLF12.p2	2.291	KLF12
CCCUGAG	2.274
AGCACCA	2.251
ZNF148.p2	2.180	ZNF148
PPARG.p2	2.099	PPARG
CREB1.p2	2.048	CREB1
UAAUGCU	2.028
DMAP1_NCOR{1,2}_SMARC.p2	1.981	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
GGAAGAC	1.968
GTF2A1,2.p2	1.906	GTF2A1 GTF2A2
NR1H4.p2	1.855	NR1H4
CAGCAGG	1.849
POU1F1.p2	1.841	POU1F1
NFE2L2.p2	1.670	NFE2L2
NRF1.p2	1.641	NRF1
ELF1,2,4.p2	1.610	ELF2 ELF1 ELF4
RREB1.p2	1.608	RREB1
PRDM1.p3	1.543	PRDM1
TFCP2.p2	1.498	TFCP2
LMO2.p2	1.498	LMO2
PATZ1.p2	1.431	PATZ1
SOX2.p2	1.375	SOX2
FOX{I1,J2}.p2	1.370	FOXI1 FOXJ2
CUCCCAA	1.360
HBP1_HMGB_SSRP1_UBTF.p2	1.335	HMGB2 HMGB3 SSRP1 UBTF HBP1
AIRE.p2	1.330	AIRE
ADNP_IRX_SIX_ZHX.p2	1.319	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
RORA.p2	1.261	RORA
CUX2.p2	1.237	CUX2
AGCUUAU	1.176
ZEB1.p2	1.139	ZEB1
T.p2	1.113	T
EN1,2.p2	1.100	EN1 EN2
HNF4A_NR2F1,2.p2	1.094	NR2F1 NR2F2 HNF4A
MZF1.p2	1.084	MZF1
UAUUGCU	1.077
GAGAUGA	1.046
LHX3,4.p2	1.043	LHX3 LHX4
RXRA_VDR{dimer}.p2	0.990	VDR	$logo of RXRA_VDR{dimer}.p2$
CTCF.p2	0.982	CTCF
MYFfamily.p2	0.976	MYOD1 MYF6 MYF5 MYOG
MTF1.p2	0.968	MTF1
AGCUGCC	0.930
GLI1..3.p2	0.901	GLI1 GLI2 GLI3
SREBF1,2.p2	0.898	SREBF1 SREBF2
TFEB.p2	0.878	TFEB
CDC5L.p2	0.771	CDC5L
ZNF384.p2	0.762	ZNF384
HMX1.p2	0.735	HMX1
GGACGGA	0.699
TAL1_TCF{3,4,12}.p2	0.692	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
GATA1..3.p2	0.675	GATA1 GATA2 GATA3
GGCUCAG	0.662
NFATC1..3.p2	0.662	NFATC3 NFATC2 NFATC1
NKX2-2,8.p2	0.656	NKX2-2 NKX2-8
POU5F1_SOX2{dimer}.p2	0.637	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
FEV.p2	0.627	FEV
GCUACAU	0.577
AGUGGUU	0.574
NR5A1,2.p2	0.565	NR5A1 NR5A2
NR6A1.p2	0.563	NR6A1
UUGGCAC	0.546
ZFP161.p2	0.545	ZFP161
CCAGCAU	0.541
UCACAUU	0.537
AAAGUGC	0.500
SPZ1.p2	0.476	SPZ1
GAUCAGA	0.453
AUGGCAC	0.443
ZNF238.p2	0.433	ZNF238
MYOD1.p2	0.414	MYOD1
ZNF423.p2	0.411	ZNF423
GCUGGUG	0.405
AAGUGCU	0.333
EOMES.p2	0.328	EOMES
NANOG.p2	0.315	NANOG
AGCAGCG	0.312
TCF4_dimer.p2	0.305	TCF4
SMAD1..7,9.p2	0.295	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
TEAD1.p2	0.291	TEAD1 TEAD2 TEAD3 TEAD4
VSX1,2.p2	0.269	VSX2 VSX1
UGCAUUG	0.263
ACAGUAU	0.247
AUGUGCC	0.228
NANOG{mouse}.p2	0.227	NANOG
EWSR1-FLI1.p2	0.226	FLI1 EWSR1
AACCUGG	0.223
JUN.p2	0.214	JUN JUND JUNB
ACUGCAU	0.209
ZBTB16.p2	0.199	ZBTB16
FOXP3.p2	0.191	FOXP3
ZBTB6.p2	0.189	ZBTB6
STAT5{A,B}.p2	0.163	STAT5B STAT5A
HOXA9_MEIS1.p2	0.150	MEIS1 HOXA9
TP53.p2	0.143	TP53
AACCGUU	0.122
PDX1.p2	0.096	PDX1
PBX1.p2	0.092	PBX1
RXRG_dimer.p3	0.092	NR1H2 RXRA PPARG PPARA RXRB RXRG
PAX8.p2	0.088	PAX8
TLX1..3_NFIC{dimer}.p2	0.068	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
GAGGUAG	0.066
AAGGUGC	0.060
UGACCUA	0.059
UAAGACG	0.056
CGUGUCU	0.055
GATA6.p2	0.054	GATA6
GFI1B.p2	0.034	GFI1B
ACCCGUA	0.015
UAAGACU	0.014
CACAGUG	0.001
GAGAACU	-0.006
FOXO1,3,4.p2	-0.027	FOXO1 FOXO4 FOXO3
CCAGUGU	-0.028
MYB.p2	-0.033	MYB
NKX6-1,2.p2	-0.048	NKX6-1 NKX6-2
AACAGUC	-0.056
PAX3,7.p2	-0.061	PAX7 PAX3
AUGACAC	-0.073
NFIL3.p2	-0.080	NFIL3
CUUUGGU	-0.082
ELK1,4_GABP{A,B1}.p3	-0.089	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
GZF1.p2	-0.095	GZF1
ACCCUGU	-0.098
CRX.p2	-0.102	CRX
EBF1.p2	-0.105	EBF1
ACAGUAC	-0.152
SRF.p3	-0.159	SRF
SOX5.p2	-0.162	SOX5
MYBL2.p2	-0.179	MYBL2
AACGGAA	-0.183
CDX1,2,4.p2	-0.187	CDX1 CDX2 CDX4
GCAGCAU	-0.187
NFIX.p2	-0.189	NFIX
UCCCUUU	-0.193
UGUGCGU	-0.197
CGUACCG	-0.205
TBX4,5.p2	-0.213	TBX5 TBX4
PAX6.p2	-0.223	PAX6
AAGGCAC	-0.258
ACUGGCC	-0.258
AAUGCCC	-0.269
STAT1,3.p3	-0.309	STAT1 STAT3
BACH2.p2	-0.310	BACH2
ONECUT1,2.p2	-0.315	ONECUT2 ONECUT1
GGAGUGU	-0.332
POU3F1..4.p2	-0.346	POU3F1 POU3F3 POU3F2 POU3F4
UCACAGU	-0.362
RXR{A,B,G}.p2	-0.364	RXRA RXRB RXRG
GAUAUGU	-0.388
IKZF2.p2	-0.406	IKZF2
CEBPA,B_DDIT3.p2	-0.434	DDIT3 CEBPA CEBPB
ZNF143.p2	-0.448	ZNF143
HSF1,2.p2	-0.464	HSF1 HSF2
AAUCUCA	-0.467
NKX2-1,4.p2	-0.470	NKX2-1 NKX2-4
ATF2.p2	-0.479	ATF2
ALX1.p2	-0.507	ALX1
ESRRA.p2	-0.514	ESRRA
GGAAUGU	-0.516
RBPJ.p2	-0.521	RBPJ
ARID5B.p2	-0.530	ARID5B
MSX1,2.p2	-0.569	MSX1 MSX2
GUAACAG	-0.573
CAGUGCA	-0.619
FOX{F1,F2,J1}.p2	-0.627	FOXF2 FOXJ1 FOXF1
SRY.p2	-0.629	SRY
AAUCUCU	-0.642
PAX2.p2	-0.654	PAX2
UGCAUAG	-0.664
HOX{A5,B5}.p2	-0.740	HOXB5 HOXA5
DBP.p2	-0.758	DBP
FOXL1.p2	-0.778	FOXL1
UUUUUGC	-0.783
GGCAAGA	-0.814
NFE2.p2	-0.847	NFE2
TFAP4.p2	-0.859	TFAP4
SP1.p2	-0.901	SP1
UUGUUCG	-0.903
NKX2-3_NKX2-5.p2	-0.932	NKX2-5 NKX2-3
GUAGUGU	-0.952
NKX3-1.p2	-0.960	NKX3-1
CCUUCAU	-0.979
ATF6.p2	-0.981	ATF6
ESR1.p2	-0.984	ESR1
HIC1.p2	-0.987	HIC1
AAUACUG	-0.995
GUCAGUU	-1.005
ATF4.p2	-1.010	ATF4
NR4A2.p2	-1.014	NR4A2
UUGGUCC	-1.039
CUACAGU	-1.045
bHLH_family.p2	-1.056	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
HMGA1,2.p2	-1.060	HMGA1 HMGA2
MAZ.p2	-1.063	MAZ
HNF1A.p2	-1.085	HNF1A
EVI1.p2	-1.117	EVI1
AHR_ARNT_ARNT2.p2	-1.151	ARNT AHR ARNT2
FOXQ1.p2	-1.202	FOXQ1
AGGUAGU	-1.205
UGUGCUU	-1.227
SNAI1..3.p2	-1.228	SNAI2 SNAI1 SNAI3
NHLH1,2.p2	-1.260	NHLH1 NHLH2
FOXN1.p2	-1.285	FOXN1
AGUGCAA	-1.324
SOX{8,9,10}.p2	-1.368	SOX9 SOX8 SOX10
PAX5.p2	-1.389	PAX5
AUGGCUU	-1.417
IKZF1.p2	-1.420	IKZF1
HES1.p2	-1.427	HES1
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-1.457	ARNT MAX MYC USF1 BHLHB2 ARNT2
LEF1_TCF7_TCF7L1,2.p2	-1.508	TCF7 TCF7L2 LEF1 TCF7L1
EGR1..3.p2	-1.565	EGR3 EGR1 EGR2
ZIC1..3.p2	-1.575	ZIC1 ZIC2 ZIC3
AUUGCAC	-1.637
TFAP2{A,C}.p2	-1.650	TFAP2C TFAP2A
UUGGCAA	-1.651
HLF.p2	-1.661	HLF
BPTF.p2	-1.666	BPTF
GUGCAAA	-1.747
FOS_FOS{B,L1}_JUN{B,D}.p2	-1.769	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
KLF4.p3	-1.772	KLF4
UCAAGUA	-1.809
TFAP2B.p2	-1.810	TFAP2B
EHF.p2	-1.888	EHF
ACAUUCA	-1.903
GUAAACA	-1.906
STAT2,4,6.p2	-1.970	STAT2 STAT4 STAT6
AACACUG	-1.988
FOXA2.p3	-2.059	FOXA2
HOX{A4,D4}.p2	-2.101	HOXA4 HOXD4
GFI1.p2	-2.115	GFI1
UCCAGUU	-2.218
MAFB.p2	-2.324	MAFB
REST.p3	-2.407	REST
HIF1A.p2	-2.467	HIF1A
TLX2.p2	-2.507	TLX2
HOX{A6,A7,B6,B7}.p2	-2.512	HOXB6 HOXA7 HOXB7 HOXA6
GTF2I.p2	-2.528	GTF2I
FOXD3.p2	-2.535	FOXD3
AGCAGCA	-2.818
XBP1.p3	-2.934	XBP1
NFE2L1.p2	-2.960	NFE2L1
RFX1..5_RFXANK_RFXAP.p2	-3.052	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
PRRX1,2.p2	-3.200	PRRX2 PRRX1
UGAAAUG	-3.400
ATF5_CREB3.p2	-3.994	ATF5 CREB3

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Sample name: GNF_2_thymus

Sorted z-values for every WM.