ISMARA results: GNF_2

Sample name: GNF_2_trachea

Sorted Z-values histogram for the sample GNF_2_trachea

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
TBP.p2	10.090	TBP
POU2F1..3.p2	8.184	POU2F2 POU2F1 POU2F3
FOSL2.p2	6.368	FOSL2
SNAI1..3.p2	5.706	SNAI2 SNAI1 SNAI3
AR.p2	5.177	AR
MYFfamily.p2	5.046	MYOD1 MYF6 MYF5 MYOG
ATF6.p2	4.700	ATF6
SRF.p3	4.661	SRF
FOXA2.p3	4.437	FOXA2
POU5F1.p2	4.243	POU5F1
XBP1.p3	3.997	XBP1
NFKB1_REL_RELA.p2	3.800	RELA REL NFKB1
POU5F1_SOX2{dimer}.p2	3.446	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
POU1F1.p2	3.339	POU1F1
TCF4_dimer.p2	3.317	TCF4
FOX{C1,C2}.p2	3.261	FOXC1 FOXC2
PPARG.p2	3.230	PPARG
GTF2A1,2.p2	3.141	GTF2A1 GTF2A2
GUAGUGU	3.054
TEAD1.p2	2.977	TEAD1 TEAD2 TEAD3 TEAD4
TLX1..3_NFIC{dimer}.p2	2.921	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
HAND1,2.p2	2.843	HAND1 HAND2
POU6F1.p2	2.781	POU6F1
HBP1_HMGB_SSRP1_UBTF.p2	2.727	HMGB2 HMGB3 SSRP1 UBTF HBP1
TFAP2{A,C}.p2	2.684	TFAP2C TFAP2A
EN1,2.p2	2.671	EN1 EN2
TFCP2.p2	2.623	TFCP2
MZF1.p2	2.623	MZF1
NFATC1..3.p2	2.499	NFATC3 NFATC2 NFATC1
NR6A1.p2	2.470	NR6A1
IRF1,2,7.p3	2.222	IRF1 IRF2 IRF7
MSX1,2.p2	2.206	MSX1 MSX2
KLF12.p2	2.167	KLF12
NR1H4.p2	2.108	NR1H4
EGR1..3.p2	2.101	EGR3 EGR1 EGR2
SMAD1..7,9.p2	2.078	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
CAGCAGG	2.074
SPZ1.p2	2.061	SPZ1
EOMES.p2	2.029	EOMES
STAT1,3.p3	1.989	STAT1 STAT3
FOX{D1,D2}.p2	1.938	FOXD2 FOXD1
CDC5L.p2	1.897	CDC5L
ESR1.p2	1.846	ESR1
CCAGUGU	1.722
CRX.p2	1.712	CRX
NR5A1,2.p2	1.686	NR5A1 NR5A2
CCCUGAG	1.665
TBX4,5.p2	1.643	TBX5 TBX4
AAAGUGC	1.604
GUGCAAA	1.561
ETS1,2.p2	1.507	ETS2 ETS1
NANOG{mouse}.p2	1.493	NANOG
TFAP4.p2	1.476	TFAP4
CUUUGGU	1.464
NFIL3.p2	1.429	NFIL3
SOX5.p2	1.423	SOX5
TGIF1.p2	1.401	TGIF1
ZBTB6.p2	1.370	ZBTB6
ZNF238.p2	1.368	ZNF238
UAAUGCU	1.359
CCAGCAU	1.322
T.p2	1.314	T
AAGGCAC	1.304
MTF1.p2	1.302	MTF1
TFEB.p2	1.291	TFEB
ZEB1.p2	1.260	ZEB1
FEV.p2	1.254	FEV
NKX3-2.p2	1.239	NKX3-2
FOXO1,3,4.p2	1.219	FOXO1 FOXO4 FOXO3
GAGAUGA	1.188
AIRE.p2	1.187	AIRE
FOXP3.p2	1.163	FOXP3
GAGAACU	1.142
NFIX.p2	1.133	NFIX
FOS_FOS{B,L1}_JUN{B,D}.p2	1.129	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
NR3C1.p2	1.106	NR3C1
AAGUGCU	1.062
TLX2.p2	1.047	TLX2
FOX{F1,F2,J1}.p2	0.988	FOXF2 FOXJ1 FOXF1
AAUGCCC	0.980
EVI1.p2	0.979	EVI1
ALX1.p2	0.966	ALX1
MYOD1.p2	0.964	MYOD1
STAT2,4,6.p2	0.952	STAT2 STAT4 STAT6
UCCCUUU	0.930
EP300.p2	0.914	EP300
GAUCAGA	0.901
GATA6.p2	0.892	GATA6
CUCCCAA	0.862
UGUGCUU	0.862
UCACAGU	0.837
RXRA_VDR{dimer}.p2	0.834	VDR	$logo of RXRA_VDR{dimer}.p2$
CACAGUG	0.824
HIC1.p2	0.823	HIC1
ZNF423.p2	0.814	ZNF423
FOX{I1,J2}.p2	0.800	FOXI1 FOXJ2
ATF2.p2	0.800	ATF2
HMGA1,2.p2	0.775	HMGA1 HMGA2
ONECUT1,2.p2	0.761	ONECUT2 ONECUT1
EWSR1-FLI1.p2	0.748	FLI1 EWSR1
AHR_ARNT_ARNT2.p2	0.738	ARNT AHR ARNT2
RREB1.p2	0.735	RREB1
AAGGUGC	0.727
CEBPA,B_DDIT3.p2	0.720	DDIT3 CEBPA CEBPB
AGCUUAU	0.713
HOX{A5,B5}.p2	0.708	HOXB5 HOXA5
GAGGUAG	0.683
UUGUUCG	0.662
AUUGCAC	0.648
CGUGUCU	0.640
ZIC1..3.p2	0.633	ZIC1 ZIC2 ZIC3
IKZF1.p2	0.633	IKZF1
GTF2I.p2	0.604	GTF2I
MAZ.p2	0.599	MAZ
GGAAGAC	0.589
FOXL1.p2	0.574	FOXL1
MEF2{A,B,C,D}.p2	0.533	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
UUUUUGC	0.532
PAX4.p2	0.502	PAX4
GGACGGA	0.493
UGAAAUG	0.466
GAUUGUC	0.463
DBP.p2	0.452	DBP
VSX1,2.p2	0.439	VSX2 VSX1
PATZ1.p2	0.430	PATZ1
UGCAUAG	0.425
ZNF148.p2	0.424	ZNF148
RUNX1..3.p2	0.381	RUNX1 RUNX3 RUNX2
AAUCUCU	0.323
STAT5{A,B}.p2	0.306	STAT5B STAT5A
ADNP_IRX_SIX_ZHX.p2	0.303	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
CGUACCG	0.298
RORA.p2	0.277	RORA
UCCAGUU	0.276
AUGUGCC	0.265
TP53.p2	0.262	TP53
NKX2-1,4.p2	0.245	NKX2-1 NKX2-4
CTCF.p2	0.227	CTCF
LEF1_TCF7_TCF7L1,2.p2	0.204	TCF7 TCF7L2 LEF1 TCF7L1
GGCUCAG	0.191
RFX1..5_RFXANK_RFXAP.p2	0.145	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
GCUACAU	0.145
SREBF1,2.p2	0.113	SREBF1 SREBF2
IKZF2.p2	0.110	IKZF2
GUAACAG	0.098
CUACAGU	0.094
CUX2.p2	0.083	CUX2
ZBTB16.p2	0.080	ZBTB16
PRDM1.p3	0.069	PRDM1
UUGGCAA	0.068
HSF1,2.p2	0.068	HSF1 HSF2
HNF1A.p2	0.062	HNF1A
PAX6.p2	0.056	PAX6
AACCGUU	0.052
REST.p3	0.050	REST
AGCAGCG	0.050
AGCUGCC	0.024
UGACCUA	-0.001
RXRG_dimer.p3	-0.021	NR1H2 RXRA PPARG PPARA RXRB RXRG
ACCCGUA	-0.043
NKX6-1,2.p2	-0.066	NKX6-1 NKX6-2
LMO2.p2	-0.072	LMO2
CREB1.p2	-0.073	CREB1
PAX8.p2	-0.081	PAX8
UUGGUCC	-0.089
GGAGUGU	-0.094
UAAGACU	-0.103
AACAGUC	-0.106
PAX3,7.p2	-0.106	PAX7 PAX3
UAAGACG	-0.123
LHX3,4.p2	-0.136	LHX3 LHX4
NR4A2.p2	-0.152	NR4A2
ACAGUAU	-0.159
MYBL2.p2	-0.166	MYBL2
UGUGCGU	-0.171
GAUAUGU	-0.184
ACUGGCC	-0.187
AAUCUCA	-0.195
CCUUCAU	-0.218
AUGGCUU	-0.223
GATA1..3.p2	-0.241	GATA1 GATA2 GATA3
GLI1..3.p2	-0.252	GLI1 GLI2 GLI3
GGCAAGA	-0.262
AGCAGCA	-0.270
ACCCUGU	-0.283
SOX17.p2	-0.288	SOX17
AACGGAA	-0.304
AACCUGG	-0.332
UGCAUUG	-0.365
HNF4A_NR2F1,2.p2	-0.372	NR2F1 NR2F2 HNF4A
HOXA9_MEIS1.p2	-0.386	MEIS1 HOXA9
RBPJ.p2	-0.388	RBPJ
ACAGUAC	-0.388
AUGACAC	-0.401
ACUGCAU	-0.406
ZFP161.p2	-0.414	ZFP161
TAL1_TCF{3,4,12}.p2	-0.415	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
AGCACCA	-0.445
EBF1.p2	-0.449	EBF1
RXR{A,B,G}.p2	-0.462	RXRA RXRB RXRG
AUGGCAC	-0.489
SPI1.p2	-0.497	SPI1
ARID5B.p2	-0.510	ARID5B
HLF.p2	-0.515	HLF
GZF1.p2	-0.520	GZF1
BACH2.p2	-0.521	BACH2
NFE2L2.p2	-0.544	NFE2L2
GGCAGUG	-0.545
PDX1.p2	-0.555	PDX1
NFE2L1.p2	-0.556	NFE2L1
DMAP1_NCOR{1,2}_SMARC.p2	-0.616	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
JUN.p2	-0.630	JUN JUND JUNB
UAUUGCU	-0.651
PAX5.p2	-0.712	PAX5
GFI1B.p2	-0.733	GFI1B
ACAUUCA	-0.756
ATF5_CREB3.p2	-0.763	ATF5 CREB3
NKX2-3_NKX2-5.p2	-0.772	NKX2-5 NKX2-3
UCACAUU	-0.788
UUGGCAC	-0.796
AGGUAGU	-0.837
PAX2.p2	-0.851	PAX2
CDX1,2,4.p2	-0.860	CDX1 CDX2 CDX4
FOXD3.p2	-0.890	FOXD3
NFE2.p2	-0.893	NFE2
SOX{8,9,10}.p2	-0.929	SOX9 SOX8 SOX10
AGUGCAA	-0.934
PRRX1,2.p2	-0.945	PRRX2 PRRX1
GGAAUGU	-0.970
GUAAACA	-1.000
GUCAGUU	-1.003
SRY.p2	-1.010	SRY
ZNF384.p2	-1.046	ZNF384
GCAGCAU	-1.127
NHLH1,2.p2	-1.130	NHLH1 NHLH2
NANOG.p2	-1.194	NANOG
NKX3-1.p2	-1.220	NKX3-1
AGUGGUU	-1.262
FOXN1.p2	-1.370	FOXN1
NKX2-2,8.p2	-1.450	NKX2-2 NKX2-8
AACACUG	-1.469
POU3F1..4.p2	-1.603	POU3F1 POU3F3 POU3F2 POU3F4
HMX1.p2	-1.710	HMX1
AAUACUG	-1.855
HES1.p2	-1.898	HES1
FOXQ1.p2	-1.926	FOXQ1
PBX1.p2	-1.929	PBX1
MAFB.p2	-1.946	MAFB
KLF4.p3	-1.959	KLF4
HOX{A6,A7,B6,B7}.p2	-2.028	HOXB6 HOXA7 HOXB7 HOXA6
SOX2.p2	-2.045	SOX2
GCUGGUG	-2.096
HOX{A4,D4}.p2	-2.112	HOXA4 HOXD4
TFDP1.p2	-2.124	TFDP1
CAGUGCA	-2.181
UCAAGUA	-2.281
SP1.p2	-2.328	SP1
ELF1,2,4.p2	-2.331	ELF2 ELF1 ELF4
BPTF.p2	-2.691	BPTF
GFI1.p2	-2.810	GFI1
EHF.p2	-2.907	EHF
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-2.979	ARNT MAX MYC USF1 BHLHB2 ARNT2
SPIB.p2	-3.072	SPIB
bHLH_family.p2	-3.085	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
ESRRA.p2	-3.136	ESRRA
TFAP2B.p2	-3.443	TFAP2B
NFY{A,B,C}.p2	-3.569	NFYC NFYB NFYA
HIF1A.p2	-3.605	HIF1A
PITX1..3.p2	-3.728	PITX2 PITX3 PITX1
ATF4.p2	-3.754	ATF4
MYB.p2	-5.070	MYB
ELK1,4_GABP{A,B1}.p3	-6.907	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
YY1.p2	-7.114	YY1
ZNF143.p2	-9.617	ZNF143
NRF1.p2	-10.485	NRF1
E2F1..5.p2	-10.653	E2F4 E2F5 E2F2 E2F1 E2F3

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Sample name: GNF_2_trachea

Sorted z-values for every WM.