ISMARA results: NCI60_1

Sample name: NCI60_1_HCC-2998

Sorted Z-values histogram for the sample NCI60_1_HCC-2998

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
YY1.p2	10.007	YY1
NRF1.p2	7.987	NRF1
ZNF143.p2	7.082	ZNF143
ELK1,4_GABP{A,B1}.p3	6.846	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
NFY{A,B,C}.p2	6.415	NFYC NFYB NFYA
ELF1,2,4.p2	6.349	ELF2 ELF1 ELF4
EHF.p2	5.516	EHF
E2F1..5.p2	5.473	E2F4 E2F5 E2F2 E2F1 E2F3
bHLH_family.p2	4.794	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	4.653	ARNT MAX MYC USF1 BHLHB2 ARNT2
ATF5_CREB3.p2	4.130	ATF5 CREB3
GGAAUGU	3.931
SNAI1..3.p2	3.823	SNAI2 SNAI1 SNAI3
MYB.p2	3.769	MYB
FOXD3.p2	3.469	FOXD3
IRF1,2,7.p3	3.147	IRF1 IRF2 IRF7
HES1.p2	2.993	HES1
UCAAGUA	2.825
XBP1.p3	2.822	XBP1
BACH2.p2	2.803	BACH2
HNF4A_NR2F1,2.p2	2.803	NR2F1 NR2F2 HNF4A
HIF1A.p2	2.788	HIF1A
NFE2L2.p2	2.722	NFE2L2
ATF4.p2	2.605	ATF4
TFDP1.p2	2.431	TFDP1
ESRRA.p2	2.332	ESRRA
PAX5.p2	2.285	PAX5
ZEB1.p2	2.218	ZEB1
KLF4.p3	2.108	KLF4
TP53.p2	2.079	TP53
T.p2	2.049	T
PBX1.p2	1.976	PBX1
NR4A2.p2	1.948	NR4A2
EP300.p2	1.923	EP300
BPTF.p2	1.777	BPTF
SOX17.p2	1.747	SOX17
POU6F1.p2	1.665	POU6F1
HOX{A4,D4}.p2	1.606	HOXA4 HOXD4
ACAGUAC	1.559
SP1.p2	1.544	SP1
FOS_FOS{B,L1}_JUN{B,D}.p2	1.541	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
SPI1.p2	1.535	SPI1
HNF1A.p2	1.524	HNF1A
CCUUCAU	1.486
UCCAGUU	1.485
RXRG_dimer.p3	1.467	NR1H2 RXRA PPARG PPARA RXRB RXRG
HSF1,2.p2	1.446	HSF1 HSF2
NKX3-1.p2	1.424	NKX3-1
SOX2.p2	1.370	SOX2
ADNP_IRX_SIX_ZHX.p2	1.369	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
NKX2-2,8.p2	1.358	NKX2-2 NKX2-8
ZNF148.p2	1.321	ZNF148
UCACAUU	1.257
PATZ1.p2	1.227	PATZ1
IKZF1.p2	1.137	IKZF1
FOXN1.p2	1.134	FOXN1
SOX5.p2	1.130	SOX5
ZBTB16.p2	1.099	ZBTB16
GUAGUGU	1.092
CRX.p2	1.087	CRX
PPARG.p2	1.032	PPARG
AGUGGUU	1.006
AGCAGCG	0.938
AHR_ARNT_ARNT2.p2	0.927	ARNT AHR ARNT2
GAUUGUC	0.886
PRRX1,2.p2	0.886	PRRX2 PRRX1
GGAGUGU	0.883
TFAP2B.p2	0.844	TFAP2B
PITX1..3.p2	0.841	PITX2 PITX3 PITX1
AUGGCAC	0.801
GFI1B.p2	0.791	GFI1B
FOXQ1.p2	0.777	FOXQ1
AAGGCAC	0.749
CAGUGCA	0.672
GUAACAG	0.560
AAUCUCA	0.558
EBF1.p2	0.501	EBF1
CTCF.p2	0.467	CTCF
MSX1,2.p2	0.434	MSX1 MSX2
AAUGCCC	0.427
GCUGGUG	0.392
ATF6.p2	0.388	ATF6
PAX4.p2	0.350	PAX4
GCUACAU	0.312
NKX3-2.p2	0.312	NKX3-2
HMGA1,2.p2	0.305	HMGA1 HMGA2
AAUCUCU	0.297
AGCUUAU	0.264
ESR1.p2	0.263	ESR1
ARID5B.p2	0.261	ARID5B
AACCGUU	0.260
AACCUGG	0.225
UUGUUCG	0.209
AACAGUC	0.201
CREB1.p2	0.200	CREB1
SPZ1.p2	0.197	SPZ1
AUGUGCC	0.174
CCAGUGU	0.171
NFE2.p2	0.166	NFE2
POU3F1..4.p2	0.128	POU3F1 POU3F3 POU3F2 POU3F4
SOX{8,9,10}.p2	0.114	SOX9 SOX8 SOX10
ACAGUAU	0.111
NKX6-1,2.p2	0.089	NKX6-1 NKX6-2
ACCCGUA	0.071
CUUUGGU	0.069
GGACGGA	0.038
GAUAUGU	0.035
HMX1.p2	0.033	HMX1
FOXO1,3,4.p2	0.030	FOXO1 FOXO4 FOXO3
UUGGUCC	0.029
UAAGACG	0.021
UCACAGU	0.010
LMO2.p2	-0.009	LMO2
POU5F1_SOX2{dimer}.p2	-0.026	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
NFE2L1.p2	-0.034	NFE2L1
EWSR1-FLI1.p2	-0.077	FLI1 EWSR1
CGUGUCU	-0.088
GGCAAGA	-0.127
VSX1,2.p2	-0.145	VSX2 VSX1
GFI1.p2	-0.147	GFI1
AUUGCAC	-0.147
UGACCUA	-0.174
CUACAGU	-0.197
CGUACCG	-0.215
UUGGCAA	-0.239
ACCCUGU	-0.239
ACUGGCC	-0.248
UGCAUUG	-0.256
ACUGCAU	-0.293
PAX3,7.p2	-0.303	PAX7 PAX3
HLF.p2	-0.322	HLF
PAX8.p2	-0.356	PAX8
UGUGCGU	-0.359
LEF1_TCF7_TCF7L1,2.p2	-0.381	TCF7 TCF7L2 LEF1 TCF7L1
SREBF1,2.p2	-0.408	SREBF1 SREBF2
HOXA9_MEIS1.p2	-0.408	MEIS1 HOXA9
PAX6.p2	-0.411	PAX6
AGCUGCC	-0.414
AACGGAA	-0.421
FOXA2.p3	-0.428	FOXA2
GCAGCAU	-0.438
NANOG.p2	-0.441	NANOG
CDC5L.p2	-0.452	CDC5L
AGCAGCA	-0.454
RXRA_VDR{dimer}.p2	-0.460	VDR	$logo of RXRA_VDR{dimer}.p2$
GZF1.p2	-0.463	GZF1
AUGACAC	-0.485
ATF2.p2	-0.559	ATF2
UUGGCAC	-0.583
MAFB.p2	-0.594	MAFB
NR6A1.p2	-0.611	NR6A1
NKX2-3_NKX2-5.p2	-0.663	NKX2-5 NKX2-3
NFKB1_REL_RELA.p2	-0.665	RELA REL NFKB1
UAAUGCU	-0.674
RORA.p2	-0.678	RORA
PDX1.p2	-0.688	PDX1
FOX{I1,J2}.p2	-0.696	FOXI1 FOXJ2
NFIL3.p2	-0.715	NFIL3
RBPJ.p2	-0.728	RBPJ
NFIX.p2	-0.742	NFIX
AGUGCAA	-0.746
GUGCAAA	-0.761
UAAGACU	-0.766
ONECUT1,2.p2	-0.800	ONECUT2 ONECUT1
FOX{F1,F2,J1}.p2	-0.806	FOXF2 FOXJ1 FOXF1
NFATC1..3.p2	-0.811	NFATC3 NFATC2 NFATC1
CCCUGAG	-0.822
AGGUAGU	-0.832
AAGGUGC	-0.861
DMAP1_NCOR{1,2}_SMARC.p2	-0.868	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
AUGGCUU	-0.908
GUCAGUU	-0.910
GAUCAGA	-0.974
CCAGCAU	-0.979
TFAP4.p2	-1.041	TFAP4
GAGAACU	-1.046
CUX2.p2	-1.054	CUX2
POU2F1..3.p2	-1.101	POU2F2 POU2F1 POU2F3
ACAUUCA	-1.105
TEAD1.p2	-1.105	TEAD1 TEAD2 TEAD3 TEAD4
SRY.p2	-1.143	SRY
TFAP2{A,C}.p2	-1.227	TFAP2C TFAP2A
DBP.p2	-1.237	DBP
FOX{C1,C2}.p2	-1.241	FOXC1 FOXC2
SPIB.p2	-1.256	SPIB
EOMES.p2	-1.259	EOMES
PAX2.p2	-1.271	PAX2
ZNF238.p2	-1.277	ZNF238
MZF1.p2	-1.287	MZF1
NR5A1,2.p2	-1.304	NR5A1 NR5A2
GAGAUGA	-1.306
CACAGUG	-1.306
CAGCAGG	-1.311
CEBPA,B_DDIT3.p2	-1.334	DDIT3 CEBPA CEBPB
NR3C1.p2	-1.368	NR3C1
NHLH1,2.p2	-1.372	NHLH1 NHLH2
TAL1_TCF{3,4,12}.p2	-1.381	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
ZBTB6.p2	-1.385	ZBTB6
HOX{A6,A7,B6,B7}.p2	-1.438	HOXB6 HOXA7 HOXB7 HOXA6
AAGUGCU	-1.445
UGCAUAG	-1.471
LHX3,4.p2	-1.474	LHX3 LHX4
ZFP161.p2	-1.544	ZFP161
UGAAAUG	-1.544
EN1,2.p2	-1.559	EN1 EN2
AR.p2	-1.602	AR
MYBL2.p2	-1.627	MYBL2
STAT5{A,B}.p2	-1.632	STAT5B STAT5A
AACACUG	-1.645
STAT2,4,6.p2	-1.655	STAT2 STAT4 STAT6
UCCCUUU	-1.686
NKX2-1,4.p2	-1.705	NKX2-1 NKX2-4
GGCUCAG	-1.780
EGR1..3.p2	-1.796	EGR3 EGR1 EGR2
GUAAACA	-1.813
UAUUGCU	-1.822
AAAGUGC	-1.823
GGAAGAC	-1.860
GATA6.p2	-1.975	GATA6
HOX{A5,B5}.p2	-2.014	HOXB5 HOXA5
MTF1.p2	-2.023	MTF1
NANOG{mouse}.p2	-2.052	NANOG
RXR{A,B,G}.p2	-2.054	RXRA RXRB RXRG
IKZF2.p2	-2.055	IKZF2
GAGGUAG	-2.063
AGCACCA	-2.077
PRDM1.p3	-2.085	PRDM1
FOXL1.p2	-2.089	FOXL1
TBX4,5.p2	-2.093	TBX5 TBX4
UGUGCUU	-2.139
ETS1,2.p2	-2.143	ETS2 ETS1
SRF.p3	-2.147	SRF
ALX1.p2	-2.155	ALX1
ZNF384.p2	-2.158	ZNF384
GGCAGUG	-2.187
CDX1,2,4.p2	-2.220	CDX1 CDX2 CDX4
MAZ.p2	-2.234	MAZ
GTF2A1,2.p2	-2.246	GTF2A1 GTF2A2
JUN.p2	-2.263	JUN JUND JUNB
HAND1,2.p2	-2.327	HAND1 HAND2
GLI1..3.p2	-2.333	GLI1 GLI2 GLI3
ZIC1..3.p2	-2.371	ZIC1 ZIC2 ZIC3
TLX2.p2	-2.410	TLX2
POU1F1.p2	-2.499	POU1F1
ZNF423.p2	-2.501	ZNF423
STAT1,3.p3	-2.543	STAT1 STAT3
MEF2{A,B,C,D}.p2	-2.580	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
AIRE.p2	-2.793	AIRE
TCF4_dimer.p2	-2.825	TCF4
TBP.p2	-2.894	TBP
TFCP2.p2	-2.915	TFCP2
FOSL2.p2	-2.923	FOSL2
FOXP3.p2	-2.971	FOXP3
HIC1.p2	-3.053	HIC1
RFX1..5_RFXANK_RFXAP.p2	-3.083	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
TFEB.p2	-3.129	TFEB
GTF2I.p2	-3.148	GTF2I
NR1H4.p2	-3.161	NR1H4
REST.p3	-3.255	REST
FOX{D1,D2}.p2	-3.300	FOXD2 FOXD1
FEV.p2	-3.369	FEV
POU5F1.p2	-3.679	POU5F1
MYFfamily.p2	-3.856	MYOD1 MYF6 MYF5 MYOG
KLF12.p2	-3.858	KLF12
RUNX1..3.p2	-3.987	RUNX1 RUNX3 RUNX2
SMAD1..7,9.p2	-3.991	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
EVI1.p2	-3.997	EVI1
MYOD1.p2	-4.020	MYOD1
RREB1.p2	-4.123	RREB1
HBP1_HMGB_SSRP1_UBTF.p2	-4.131	HMGB2 HMGB3 SSRP1 UBTF HBP1
UUUUUGC	-4.287
AAUACUG	-4.343
CUCCCAA	-4.569
GATA1..3.p2	-4.757	GATA1 GATA2 GATA3
TGIF1.p2	-5.089	TGIF1
TLX1..3_NFIC{dimer}.p2	-5.769	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$

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Sample name: NCI60_1_HCC-2998

Sorted z-values for every WM.