ISMARA results: NCI60_1

Sample name: NCI60_1_LOXIMVI

Sorted Z-values histogram for the sample NCI60_1_LOXIMVI

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
YY1.p2	10.321	YY1
ELK1,4_GABP{A,B1}.p3	8.405	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
ELF1,2,4.p2	7.056	ELF2 ELF1 ELF4
ZNF143.p2	6.787	ZNF143
GGAAUGU	6.082
E2F1..5.p2	6.035	E2F4 E2F5 E2F2 E2F1 E2F3
MYB.p2	5.234	MYB
NRF1.p2	5.044	NRF1
NFY{A,B,C}.p2	4.918	NFYC NFYB NFYA
TFDP1.p2	4.900	TFDP1
ATF5_CREB3.p2	4.309	ATF5 CREB3
bHLH_family.p2	4.296	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	4.136	ARNT MAX MYC USF1 BHLHB2 ARNT2
HIF1A.p2	3.579	HIF1A
BACH2.p2	3.245	BACH2
ATF4.p2	3.152	ATF4
IRF1,2,7.p3	2.895	IRF1 IRF2 IRF7
BPTF.p2	2.522	BPTF
UCAAGUA	2.516
UCACAUU	2.516
TP53.p2	2.497	TP53
FOXD3.p2	2.413	FOXD3
ESRRA.p2	2.403	ESRRA
NFE2L1.p2	2.289	NFE2L1
HOX{A6,A7,B6,B7}.p2	2.218	HOXB6 HOXA7 HOXB7 HOXA6
ZNF148.p2	2.171	ZNF148
GCAGCAU	2.115
TFAP2B.p2	2.061	TFAP2B
SPI1.p2	2.038	SPI1
ACAGUAU	1.953
GUAAACA	1.944
XBP1.p3	1.936	XBP1
AGGUAGU	1.936
EHF.p2	1.861	EHF
AGUGGUU	1.858
AHR_ARNT_ARNT2.p2	1.856	ARNT AHR ARNT2
AGCAGCA	1.797
NKX3-1.p2	1.725	NKX3-1
PAX5.p2	1.680	PAX5
AACGGAA	1.635
UCCAGUU	1.634
SPIB.p2	1.605	SPIB
HMGA1,2.p2	1.589	HMGA1 HMGA2
AACACUG	1.499
AAUACUG	1.456
FOS_FOS{B,L1}_JUN{B,D}.p2	1.407	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
UUGGUCC	1.306
CUUUGGU	1.302
MAFB.p2	1.279	MAFB
AAUGCCC	1.243
RXRG_dimer.p3	1.231	NR1H2 RXRA PPARG PPARA RXRB RXRG
ARID5B.p2	1.179	ARID5B
SOX17.p2	1.178	SOX17
ACAGUAC	1.152
AUGGCAC	1.095
PRRX1,2.p2	1.071	PRRX2 PRRX1
SP1.p2	1.064	SP1
NFKB1_REL_RELA.p2	1.041	RELA REL NFKB1
ZBTB16.p2	1.013	ZBTB16
NFE2.p2	0.993	NFE2
ZNF238.p2	0.911	ZNF238
UAAUGCU	0.903
NKX6-1,2.p2	0.846	NKX6-1 NKX6-2
KLF4.p3	0.843	KLF4
FOXN1.p2	0.842	FOXN1
AAGGCAC	0.797
EP300.p2	0.766	EP300
GUAGUGU	0.760
DMAP1_NCOR{1,2}_SMARC.p2	0.749	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
GFI1.p2	0.746	GFI1
STAT2,4,6.p2	0.738	STAT2 STAT4 STAT6
CREB1.p2	0.738	CREB1
UUGGCAA	0.715
ACCCUGU	0.694
CTCF.p2	0.686	CTCF
HES1.p2	0.678	HES1
POU3F1..4.p2	0.673	POU3F1 POU3F3 POU3F2 POU3F4
CGUACCG	0.629
GUAACAG	0.614
PATZ1.p2	0.594	PATZ1
GGAGUGU	0.587
FOXQ1.p2	0.559	FOXQ1
NANOG.p2	0.530	NANOG
NKX2-2,8.p2	0.380	NKX2-2 NKX2-8
AAGGUGC	0.367
GCUGGUG	0.354
GZF1.p2	0.350	GZF1
SOX2.p2	0.341	SOX2
HSF1,2.p2	0.292	HSF1 HSF2
UGACCUA	0.275
GUCAGUU	0.263
ACUGGCC	0.237
AGCUGCC	0.234
ZBTB6.p2	0.226	ZBTB6
MSX1,2.p2	0.224	MSX1 MSX2
ACUGCAU	0.221
CUACAGU	0.217
HOX{A4,D4}.p2	0.206	HOXA4 HOXD4
CCUUCAU	0.195
MYBL2.p2	0.157	MYBL2
AACCUGG	0.134
CDC5L.p2	0.122	CDC5L
RXR{A,B,G}.p2	0.102	RXRA RXRB RXRG
AACCGUU	0.075
IKZF2.p2	0.068	IKZF2
ATF6.p2	0.056	ATF6
PAX6.p2	0.046	PAX6
UGCAUUG	0.044
SOX{8,9,10}.p2	0.038	SOX9 SOX8 SOX10
PBX1.p2	0.031	PBX1
ACCCGUA	0.031
GCUACAU	0.029
ADNP_IRX_SIX_ZHX.p2	-0.011	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
STAT5{A,B}.p2	-0.037	STAT5B STAT5A
UCACAGU	-0.059
AAUCUCA	-0.077
AUGUGCC	-0.106
UAAGACU	-0.107
PAX2.p2	-0.117	PAX2
SRF.p3	-0.154	SRF
FOXO1,3,4.p2	-0.169	FOXO1 FOXO4 FOXO3
PAX3,7.p2	-0.210	PAX7 PAX3
AGCAGCG	-0.226
PDX1.p2	-0.229	PDX1
EWSR1-FLI1.p2	-0.231	FLI1 EWSR1
TFAP2{A,C}.p2	-0.240	TFAP2C TFAP2A
UGAAAUG	-0.242
CCAGUGU	-0.254
GUGCAAA	-0.267
VSX1,2.p2	-0.268	VSX2 VSX1
GGCAAGA	-0.273
NFE2L2.p2	-0.280	NFE2L2
PAX8.p2	-0.282	PAX8
ZNF384.p2	-0.284	ZNF384
FEV.p2	-0.293	FEV
GAUAUGU	-0.294
UAAGACG	-0.295
GAUUGUC	-0.322
AACAGUC	-0.339
EGR1..3.p2	-0.344	EGR3 EGR1 EGR2
PRDM1.p3	-0.344	PRDM1
ZNF423.p2	-0.345	ZNF423
UGUGCGU	-0.362
TFAP4.p2	-0.373	TFAP4
NFATC1..3.p2	-0.392	NFATC3 NFATC2 NFATC1
ONECUT1,2.p2	-0.405	ONECUT2 ONECUT1
FOX{I1,J2}.p2	-0.416	FOXI1 FOXJ2
CEBPA,B_DDIT3.p2	-0.419	DDIT3 CEBPA CEBPB
SRY.p2	-0.429	SRY
AAUCUCU	-0.465
GGACGGA	-0.481
AUGACAC	-0.481
UUGUUCG	-0.486
NFIX.p2	-0.494	NFIX
CUX2.p2	-0.503	CUX2
CAGUGCA	-0.514
TBP.p2	-0.516	TBP
CRX.p2	-0.542	CRX
AGCUUAU	-0.543
AUUGCAC	-0.549
SPZ1.p2	-0.556	SPZ1
SOX5.p2	-0.557	SOX5
SREBF1,2.p2	-0.574	SREBF1 SREBF2
NR6A1.p2	-0.584	NR6A1
GAUCAGA	-0.619
AGUGCAA	-0.664
T.p2	-0.673	T
NKX3-2.p2	-0.678	NKX3-2
POU2F1..3.p2	-0.685	POU2F2 POU2F1 POU2F3
FOXA2.p3	-0.710	FOXA2
NFIL3.p2	-0.740	NFIL3
CDX1,2,4.p2	-0.759	CDX1 CDX2 CDX4
ZFP161.p2	-0.786	ZFP161
GAGAACU	-0.799
GFI1B.p2	-0.806	GFI1B
TLX1..3_NFIC{dimer}.p2	-0.833	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
GAGGUAG	-0.837
NR4A2.p2	-0.841	NR4A2
LEF1_TCF7_TCF7L1,2.p2	-0.845	TCF7 TCF7L2 LEF1 TCF7L1
GGCAGUG	-0.860
DBP.p2	-0.911	DBP
HMX1.p2	-0.920	HMX1
LHX3,4.p2	-0.920	LHX3 LHX4
FOSL2.p2	-0.949	FOSL2
RORA.p2	-0.952	RORA
HLF.p2	-0.990	HLF
CGUGUCU	-1.014
HOXA9_MEIS1.p2	-1.071	MEIS1 HOXA9
PAX4.p2	-1.077	PAX4
STAT1,3.p3	-1.092	STAT1 STAT3
FOX{F1,F2,J1}.p2	-1.099	FOXF2 FOXJ1 FOXF1
AAAGUGC	-1.117
POU5F1_SOX2{dimer}.p2	-1.124	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
AIRE.p2	-1.124	AIRE
NANOG{mouse}.p2	-1.125	NANOG
ESR1.p2	-1.192	ESR1
FOXL1.p2	-1.206	FOXL1
PPARG.p2	-1.214	PPARG
NHLH1,2.p2	-1.218	NHLH1 NHLH2
UUGGCAC	-1.223
AUGGCUU	-1.247
ACAUUCA	-1.268
GTF2A1,2.p2	-1.275	GTF2A1 GTF2A2
EOMES.p2	-1.279	EOMES
TLX2.p2	-1.322	TLX2
UGCAUAG	-1.331
MZF1.p2	-1.342	MZF1
ZEB1.p2	-1.370	ZEB1
GTF2I.p2	-1.410	GTF2I
REST.p3	-1.432	REST
FOX{C1,C2}.p2	-1.460	FOXC1 FOXC2
GLI1..3.p2	-1.484	GLI1 GLI2 GLI3
TFEB.p2	-1.503	TFEB
PITX1..3.p2	-1.510	PITX2 PITX3 PITX1
NKX2-1,4.p2	-1.524	NKX2-1 NKX2-4
ATF2.p2	-1.534	ATF2
IKZF1.p2	-1.594	IKZF1
RREB1.p2	-1.617	RREB1
NR5A1,2.p2	-1.618	NR5A1 NR5A2
POU6F1.p2	-1.623	POU6F1
AR.p2	-1.671	AR
EBF1.p2	-1.689	EBF1
UAUUGCU	-1.700
AAGUGCU	-1.749
TEAD1.p2	-1.852	TEAD1 TEAD2 TEAD3 TEAD4
RUNX1..3.p2	-1.855	RUNX1 RUNX3 RUNX2
ZIC1..3.p2	-1.899	ZIC1 ZIC2 ZIC3
CCAGCAU	-1.912
TAL1_TCF{3,4,12}.p2	-1.942	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
AGCACCA	-1.959
FOX{D1,D2}.p2	-1.990	FOXD2 FOXD1
FOXP3.p2	-2.058	FOXP3
MTF1.p2	-2.062	MTF1
HBP1_HMGB_SSRP1_UBTF.p2	-2.089	HMGB2 HMGB3 SSRP1 UBTF HBP1
CACAGUG	-2.118
RFX1..5_RFXANK_RFXAP.p2	-2.121	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
RBPJ.p2	-2.136	RBPJ
NKX2-3_NKX2-5.p2	-2.147	NKX2-5 NKX2-3
GGCUCAG	-2.172
MYFfamily.p2	-2.220	MYOD1 MYF6 MYF5 MYOG
GGAAGAC	-2.258
JUN.p2	-2.265	JUN JUND JUNB
GAGAUGA	-2.294
MAZ.p2	-2.305	MAZ
RXRA_VDR{dimer}.p2	-2.336	VDR	$logo of RXRA_VDR{dimer}.p2$
UCCCUUU	-2.337
LMO2.p2	-2.340	LMO2
UGUGCUU	-2.366
NR3C1.p2	-2.494	NR3C1
NR1H4.p2	-2.534	NR1H4
TBX4,5.p2	-2.536	TBX5 TBX4
ETS1,2.p2	-2.600	ETS2 ETS1
CCCUGAG	-2.699
TCF4_dimer.p2	-2.753	TCF4
HNF1A.p2	-2.775	HNF1A
EVI1.p2	-2.855	EVI1
EN1,2.p2	-2.865	EN1 EN2
ALX1.p2	-3.086	ALX1
GATA6.p2	-3.262	GATA6
HOX{A5,B5}.p2	-3.317	HOXB5 HOXA5
MEF2{A,B,C,D}.p2	-3.392	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
POU1F1.p2	-3.700	POU1F1
HNF4A_NR2F1,2.p2	-3.747	NR2F1 NR2F2 HNF4A
TGIF1.p2	-3.768	TGIF1
POU5F1.p2	-3.859	POU5F1
KLF12.p2	-3.883	KLF12
GATA1..3.p2	-3.892	GATA1 GATA2 GATA3
HAND1,2.p2	-3.981	HAND1 HAND2
UUUUUGC	-4.118
TFCP2.p2	-4.323	TFCP2
SMAD1..7,9.p2	-4.520	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
CAGCAGG	-4.544
MYOD1.p2	-4.777	MYOD1
SNAI1..3.p2	-5.009	SNAI2 SNAI1 SNAI3
HIC1.p2	-5.631	HIC1
CUCCCAA	-9.680

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Sample name: NCI60_1_LOXIMVI

Sorted z-values for every WM.