ISMARA results: NCI60_1_MDA-MB-231

Sample name: NCI60_1_MDA-MB-231_ATCC

Sorted Z-values histogram for the sample NCI60_1_MDA-MB-231_ATCC

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
E2F1..5.p2	9.214	E2F4 E2F5 E2F2 E2F1 E2F3
TFDP1.p2	8.451	TFDP1
NRF1.p2	8.061	NRF1
YY1.p2	6.963	YY1
ELF1,2,4.p2	6.815	ELF2 ELF1 ELF4
MYB.p2	6.799	MYB
GGAAUGU	6.367
ELK1,4_GABP{A,B1}.p3	5.311	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
ZNF143.p2	5.271	ZNF143
KLF4.p3	5.140	KLF4
NFY{A,B,C}.p2	5.126	NFYC NFYB NFYA
XBP1.p3	4.870	XBP1
HIF1A.p2	4.374	HIF1A
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	3.940	ARNT MAX MYC USF1 BHLHB2 ARNT2
UCCAGUU	3.737
AAGGCAC	3.661
ATF5_CREB3.p2	3.506	ATF5 CREB3
NKX2-2,8.p2	3.391	NKX2-2 NKX2-8
SP1.p2	3.345	SP1
GFI1.p2	3.345	GFI1
BACH2.p2	3.274	BACH2
FOXD3.p2	2.885	FOXD3
EP300.p2	2.779	EP300
AGUGGUU	2.673
SPI1.p2	2.473	SPI1
EHF.p2	2.414	EHF
PAX5.p2	2.386	PAX5
TP53.p2	2.384	TP53
HES1.p2	2.355	HES1
TFAP2B.p2	2.345	TFAP2B
GUAGUGU	2.342
ATF4.p2	2.259	ATF4
bHLH_family.p2	2.066	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
UUGGCAA	2.053
BPTF.p2	1.867	BPTF
NFE2L1.p2	1.838	NFE2L1
AAUACUG	1.686
ARID5B.p2	1.557	ARID5B
UCAAGUA	1.544
FOXN1.p2	1.493	FOXN1
SOX17.p2	1.463	SOX17
ZBTB16.p2	1.373	ZBTB16
ACAGUAU	1.326
CAGUGCA	1.323
FOS_FOS{B,L1}_JUN{B,D}.p2	1.310	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
AGGUAGU	1.280
NFE2L2.p2	1.232	NFE2L2
HOX{A6,A7,B6,B7}.p2	1.212	HOXB6 HOXA7 HOXB7 HOXA6
CCAGUGU	1.205
NFE2.p2	1.181	NFE2
AAGGUGC	1.144
AGCAGCA	1.140
AACACUG	1.044
SRF.p3	1.039	SRF
UCACAUU	1.034
SOX{8,9,10}.p2	1.021	SOX9 SOX8 SOX10
GUGCAAA	1.021
ADNP_IRX_SIX_ZHX.p2	0.981	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
GUAAACA	0.959
ACAUUCA	0.954
PBX1.p2	0.934	PBX1
ONECUT1,2.p2	0.932	ONECUT2 ONECUT1
FOXA2.p3	0.919	FOXA2
PRRX1,2.p2	0.883	PRRX2 PRRX1
NKX3-1.p2	0.874	NKX3-1
SPZ1.p2	0.811	SPZ1
UCACAGU	0.808
ZNF148.p2	0.805	ZNF148
GGAGUGU	0.784
GCAGCAU	0.777
EWSR1-FLI1.p2	0.767	FLI1 EWSR1
AACGGAA	0.721
DMAP1_NCOR{1,2}_SMARC.p2	0.668	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
NFKB1_REL_RELA.p2	0.657	RELA REL NFKB1
ESR1.p2	0.644	ESR1
HMGA1,2.p2	0.621	HMGA1 HMGA2
ZBTB6.p2	0.616	ZBTB6
ESRRA.p2	0.606	ESRRA
SPIB.p2	0.516	SPIB
ACAGUAC	0.511
FOXQ1.p2	0.500	FOXQ1
GFI1B.p2	0.497	GFI1B
RXRG_dimer.p3	0.488	NR1H2 RXRA PPARG PPARA RXRB RXRG
POU6F1.p2	0.487	POU6F1
TEAD1.p2	0.442	TEAD1 TEAD2 TEAD3 TEAD4
HOX{A4,D4}.p2	0.417	HOXA4 HOXD4
SOX2.p2	0.412	SOX2
UGAAAUG	0.411
AHR_ARNT_ARNT2.p2	0.402	ARNT AHR ARNT2
CCUUCAU	0.393
CTCF.p2	0.327	CTCF
PITX1..3.p2	0.296	PITX2 PITX3 PITX1
NFATC1..3.p2	0.291	NFATC3 NFATC2 NFATC1
ZNF384.p2	0.288	ZNF384
CUUUGGU	0.285
AACCUGG	0.274
TFAP4.p2	0.205	TFAP4
NANOG.p2	0.201	NANOG
CREB1.p2	0.177	CREB1
AACCGUU	0.176
CUACAGU	0.173
AUUGCAC	0.158
AAUGCCC	0.155
IKZF1.p2	0.080	IKZF1
ACUGCAU	0.055
UGACCUA	0.001
ACCCGUA	0.000
ATF2.p2	-0.003	ATF2
UUGGUCC	-0.008
AAUCUCA	-0.023
MYBL2.p2	-0.025	MYBL2
GUAACAG	-0.033
GUCAGUU	-0.038
UAAUGCU	-0.064
ACUGGCC	-0.066
TFAP2{A,C}.p2	-0.073	TFAP2C TFAP2A
AGUGCAA	-0.082
CGUACCG	-0.104
UUGUUCG	-0.111
UGCAUUG	-0.134
AAGUGCU	-0.142
MAFB.p2	-0.171	MAFB
AUGUGCC	-0.213
FOXL1.p2	-0.222	FOXL1
PAX3,7.p2	-0.227	PAX7 PAX3
ACCCUGU	-0.241
AIRE.p2	-0.249	AIRE
CRX.p2	-0.258	CRX
NFIL3.p2	-0.264	NFIL3
GAUUGUC	-0.276
PAX8.p2	-0.278	PAX8
PDX1.p2	-0.304	PDX1
GAUAUGU	-0.311
AACAGUC	-0.312
AGCUUAU	-0.322
VSX1,2.p2	-0.324	VSX2 VSX1
NR4A2.p2	-0.330	NR4A2
HLF.p2	-0.356	HLF
TLX2.p2	-0.363	TLX2
EOMES.p2	-0.369	EOMES
GGACGGA	-0.404
AUGGCAC	-0.426
GAGAACU	-0.430
FEV.p2	-0.450	FEV
NKX6-1,2.p2	-0.452	NKX6-1 NKX6-2
CEBPA,B_DDIT3.p2	-0.458	DDIT3 CEBPA CEBPB
AUGACAC	-0.460
IRF1,2,7.p3	-0.471	IRF1 IRF2 IRF7
AGCUGCC	-0.490
CDX1,2,4.p2	-0.499	CDX1 CDX2 CDX4
GZF1.p2	-0.506	GZF1
ATF6.p2	-0.539	ATF6
PAX4.p2	-0.543	PAX4
AAUCUCU	-0.544
FOXO1,3,4.p2	-0.567	FOXO1 FOXO4 FOXO3
GAUCAGA	-0.582
CDC5L.p2	-0.587	CDC5L
AUGGCUU	-0.595
UGUGCGU	-0.629
POU5F1_SOX2{dimer}.p2	-0.665	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
PAX6.p2	-0.679	PAX6
HOXA9_MEIS1.p2	-0.695	MEIS1 HOXA9
STAT2,4,6.p2	-0.753	STAT2 STAT4 STAT6
PRDM1.p3	-0.783	PRDM1
TAL1_TCF{3,4,12}.p2	-0.793	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
HSF1,2.p2	-0.796	HSF1 HSF2
NR6A1.p2	-0.846	NR6A1
PPARG.p2	-0.846	PPARG
GCUGGUG	-0.846
TFEB.p2	-0.847	TFEB
UAUUGCU	-0.853
NKX3-2.p2	-0.858	NKX3-2
GGCAAGA	-0.873
UAAGACG	-0.909
LEF1_TCF7_TCF7L1,2.p2	-0.932	TCF7 TCF7L2 LEF1 TCF7L1
LMO2.p2	-0.939	LMO2
NKX2-1,4.p2	-0.939	NKX2-1 NKX2-4
UAAGACU	-0.958
LHX3,4.p2	-0.959	LHX3 LHX4
ZEB1.p2	-0.983	ZEB1
STAT5{A,B}.p2	-1.028	STAT5B STAT5A
CGUGUCU	-1.035
SREBF1,2.p2	-1.048	SREBF1 SREBF2
RXRA_VDR{dimer}.p2	-1.053	VDR	$logo of RXRA_VDR{dimer}.p2$
FOX{D1,D2}.p2	-1.079	FOXD2 FOXD1
GGAAGAC	-1.113
EGR1..3.p2	-1.138	EGR3 EGR1 EGR2
RORA.p2	-1.166	RORA
UCCCUUU	-1.183
GCUACAU	-1.192
CUX2.p2	-1.199	CUX2
RBPJ.p2	-1.227	RBPJ
CCAGCAU	-1.240
T.p2	-1.240	T
MSX1,2.p2	-1.264	MSX1 MSX2
AR.p2	-1.311	AR
UUGGCAC	-1.314
RXR{A,B,G}.p2	-1.315	RXRA RXRB RXRG
GAGAUGA	-1.326
POU3F1..4.p2	-1.335	POU3F1 POU3F3 POU3F2 POU3F4
SRY.p2	-1.408	SRY
CACAGUG	-1.414
TBX4,5.p2	-1.443	TBX5 TBX4
HBP1_HMGB_SSRP1_UBTF.p2	-1.451	HMGB2 HMGB3 SSRP1 UBTF HBP1
HMX1.p2	-1.452	HMX1
ZNF423.p2	-1.493	ZNF423
PAX2.p2	-1.555	PAX2
SOX5.p2	-1.563	SOX5
FOX{I1,J2}.p2	-1.610	FOXI1 FOXJ2
AAAGUGC	-1.698
NANOG{mouse}.p2	-1.709	NANOG
GLI1..3.p2	-1.743	GLI1 GLI2 GLI3
DBP.p2	-1.743	DBP
NHLH1,2.p2	-1.763	NHLH1 NHLH2
HOX{A5,B5}.p2	-1.778	HOXB5 HOXA5
AGCAGCG	-1.786
FOX{F1,F2,J1}.p2	-1.788	FOXF2 FOXJ1 FOXF1
ZNF238.p2	-1.811	ZNF238
NR3C1.p2	-1.815	NR3C1
IKZF2.p2	-1.860	IKZF2
GAGGUAG	-1.881
FOXP3.p2	-1.919	FOXP3
NFIX.p2	-2.049	NFIX
GTF2A1,2.p2	-2.081	GTF2A1 GTF2A2
ALX1.p2	-2.104	ALX1
TFCP2.p2	-2.149	TFCP2
TCF4_dimer.p2	-2.250	TCF4
MZF1.p2	-2.302	MZF1
MYFfamily.p2	-2.308	MYOD1 MYF6 MYF5 MYOG
FOX{C1,C2}.p2	-2.329	FOXC1 FOXC2
GTF2I.p2	-2.329	GTF2I
UGUGCUU	-2.331
ZFP161.p2	-2.337	ZFP161
JUN.p2	-2.340	JUN JUND JUNB
GGCAGUG	-2.367
UGCAUAG	-2.439
ZIC1..3.p2	-2.448	ZIC1 ZIC2 ZIC3
STAT1,3.p3	-2.474	STAT1 STAT3
PATZ1.p2	-2.518	PATZ1
FOSL2.p2	-2.523	FOSL2
GATA1..3.p2	-2.602	GATA1 GATA2 GATA3
GATA6.p2	-2.604	GATA6
EN1,2.p2	-2.624	EN1 EN2
AGCACCA	-2.644
MAZ.p2	-2.651	MAZ
HNF1A.p2	-2.729	HNF1A
NR1H4.p2	-2.742	NR1H4
CCCUGAG	-2.788
POU2F1..3.p2	-2.796	POU2F2 POU2F1 POU2F3
TBP.p2	-2.809	TBP
TLX1..3_NFIC{dimer}.p2	-2.821	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
NKX2-3_NKX2-5.p2	-2.864	NKX2-5 NKX2-3
NR5A1,2.p2	-2.925	NR5A1 NR5A2
RUNX1..3.p2	-2.976	RUNX1 RUNX3 RUNX2
HIC1.p2	-2.989	HIC1
EBF1.p2	-3.021	EBF1
REST.p3	-3.057	REST
GGCUCAG	-3.120
CAGCAGG	-3.258
ETS1,2.p2	-3.316	ETS2 ETS1
POU1F1.p2	-3.482	POU1F1
EVI1.p2	-3.487	EVI1
KLF12.p2	-3.536	KLF12
MEF2{A,B,C,D}.p2	-3.643	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
MYOD1.p2	-3.810	MYOD1
HAND1,2.p2	-4.000	HAND1 HAND2
SNAI1..3.p2	-4.052	SNAI2 SNAI1 SNAI3
HNF4A_NR2F1,2.p2	-4.062	NR2F1 NR2F2 HNF4A
SMAD1..7,9.p2	-4.146	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
MTF1.p2	-4.270	MTF1
RFX1..5_RFXANK_RFXAP.p2	-4.321	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
TGIF1.p2	-4.818	TGIF1
UUUUUGC	-4.822
POU5F1.p2	-5.022	POU5F1
RREB1.p2	-6.556	RREB1
CUCCCAA	-7.840

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Sample name: NCI60_1_MDA-MB-231_ATCC

Sorted z-values for every WM.