ISMARA results: NCI60_1

Sample name: NCI60_1_MDA-MB-435

Sorted Z-values histogram for the sample NCI60_1_MDA-MB-435

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
ELK1,4_GABP{A,B1}.p3	11.442	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
E2F1..5.p2	8.882	E2F4 E2F5 E2F2 E2F1 E2F3
NRF1.p2	8.011	NRF1
ZNF143.p2	7.143	ZNF143
ELF1,2,4.p2	6.892	ELF2 ELF1 ELF4
YY1.p2	6.511	YY1
TFDP1.p2	6.359	TFDP1
NFY{A,B,C}.p2	5.438	NFYC NFYB NFYA
MYB.p2	5.088	MYB
XBP1.p3	4.471	XBP1
bHLH_family.p2	4.251	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
ATF5_CREB3.p2	3.910	ATF5 CREB3
AAGGCAC	3.874
GGAAUGU	3.821
PAX5.p2	3.730	PAX5
HIF1A.p2	3.601	HIF1A
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	3.299	ARNT MAX MYC USF1 BHLHB2 ARNT2
GUAGUGU	3.197
AHR_ARNT_ARNT2.p2	3.144	ARNT AHR ARNT2
ATF4.p2	3.144	ATF4
EHF.p2	3.100	EHF
BPTF.p2	2.578	BPTF
PBX1.p2	2.405	PBX1
SPI1.p2	2.350	SPI1
MSX1,2.p2	2.277	MSX1 MSX2
GFI1.p2	2.166	GFI1
AACACUG	2.159
HES1.p2	2.116	HES1
ESRRA.p2	2.090	ESRRA
FOXD3.p2	1.958	FOXD3
HOX{A4,D4}.p2	1.868	HOXA4 HOXD4
BACH2.p2	1.844	BACH2
TP53.p2	1.763	TP53
ARID5B.p2	1.756	ARID5B
SP1.p2	1.692	SP1
ACAGUAC	1.664
ONECUT1,2.p2	1.658	ONECUT2 ONECUT1
KLF4.p3	1.546	KLF4
HMGA1,2.p2	1.522	HMGA1 HMGA2
ZBTB16.p2	1.509	ZBTB16
AGUGGUU	1.465
NANOG.p2	1.441	NANOG
NKX6-1,2.p2	1.441	NKX6-1 NKX6-2
NFE2L1.p2	1.294	NFE2L1
HOX{A6,A7,B6,B7}.p2	1.257	HOXB6 HOXA7 HOXB7 HOXA6
UUGGCAA	1.225
SOX17.p2	1.177	SOX17
EP300.p2	1.171	EP300
EWSR1-FLI1.p2	1.158	FLI1 EWSR1
GUAACAG	1.137
PRDM1.p3	1.079	PRDM1
NKX3-1.p2	0.919	NKX3-1
SPIB.p2	0.918	SPIB
LHX3,4.p2	0.894	LHX3 LHX4
NFE2.p2	0.883	NFE2
UCAAGUA	0.881
UCCAGUU	0.868
GGCAAGA	0.844
GFI1B.p2	0.842	GFI1B
TFAP2B.p2	0.818	TFAP2B
CRX.p2	0.811	CRX
UCACAUU	0.805
SRF.p3	0.732	SRF
CCUUCAU	0.701
AACCUGG	0.692
PAX6.p2	0.686	PAX6
FOXN1.p2	0.676	FOXN1
GCUGGUG	0.660
NFE2L2.p2	0.642	NFE2L2
NKX3-2.p2	0.638	NKX3-2
AAGGUGC	0.637
NKX2-2,8.p2	0.633	NKX2-2 NKX2-8
CUACAGU	0.621
CTCF.p2	0.619	CTCF
NR5A1,2.p2	0.570	NR5A1 NR5A2
AUGGCAC	0.546
GGAGUGU	0.516
AAUACUG	0.506
MAFB.p2	0.506	MAFB
NFATC1..3.p2	0.493	NFATC3 NFATC2 NFATC1
GUGCAAA	0.488
IKZF2.p2	0.473	IKZF2
GZF1.p2	0.455	GZF1
AGGUAGU	0.454
PATZ1.p2	0.435	PATZ1
GCAGCAU	0.431
UUGGUCC	0.411
CCAGUGU	0.404
GAUUGUC	0.391
AAUCUCA	0.379
RXRG_dimer.p3	0.377	NR1H2 RXRA PPARG PPARA RXRB RXRG
SREBF1,2.p2	0.375	SREBF1 SREBF2
FOS_FOS{B,L1}_JUN{B,D}.p2	0.343	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
UAAGACG	0.339
UGAAAUG	0.336
AGCUUAU	0.306
RBPJ.p2	0.302	RBPJ
AACCGUU	0.279
SPZ1.p2	0.251	SPZ1
AAUGCCC	0.225
FOXQ1.p2	0.224	FOXQ1
SOX2.p2	0.220	SOX2
TFEB.p2	0.214	TFEB
T.p2	0.199	T
ACAGUAU	0.196
ZNF423.p2	0.184	ZNF423
NR6A1.p2	0.179	NR6A1
FOX{I1,J2}.p2	0.157	FOXI1 FOXJ2
FOXO1,3,4.p2	0.139	FOXO1 FOXO4 FOXO3
ACUGGCC	0.134
CUUUGGU	0.115
SOX{8,9,10}.p2	0.099	SOX9 SOX8 SOX10
AAUCUCU	0.082
ACCCGUA	0.076
AUGUGCC	0.065
AGCAGCG	0.039
PRRX1,2.p2	0.017	PRRX2 PRRX1
ZNF384.p2	0.006	ZNF384
ZNF148.p2	-0.018	ZNF148
PAX8.p2	-0.021	PAX8
LEF1_TCF7_TCF7L1,2.p2	-0.036	TCF7 TCF7L2 LEF1 TCF7L1
MYBL2.p2	-0.051	MYBL2
AUGACAC	-0.063
ACUGCAU	-0.113
AACAGUC	-0.139
CAGUGCA	-0.140
DBP.p2	-0.140	DBP
UGACCUA	-0.143
CCAGCAU	-0.173
ESR1.p2	-0.175	ESR1
AGCACCA	-0.191
PDX1.p2	-0.207	PDX1
IKZF1.p2	-0.217	IKZF1
GAUAUGU	-0.239
NR4A2.p2	-0.263	NR4A2
UAUUGCU	-0.286
UGUGCGU	-0.287
GAUCAGA	-0.287
DMAP1_NCOR{1,2}_SMARC.p2	-0.289	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
STAT5{A,B}.p2	-0.292	STAT5B STAT5A
SRY.p2	-0.298	SRY
CUX2.p2	-0.299	CUX2
POU3F1..4.p2	-0.300	POU3F1 POU3F3 POU3F2 POU3F4
ZIC1..3.p2	-0.301	ZIC1 ZIC2 ZIC3
GGACGGA	-0.325
AACGGAA	-0.332
GCUACAU	-0.369
UUGGCAC	-0.376
UCACAGU	-0.380
GAGGUAG	-0.391
UAAUGCU	-0.394
NR3C1.p2	-0.432	NR3C1
PAX3,7.p2	-0.434	PAX7 PAX3
NFIL3.p2	-0.438	NFIL3
TFAP4.p2	-0.446	TFAP4
VSX1,2.p2	-0.453	VSX2 VSX1
AUGGCUU	-0.467
UAAGACU	-0.473
FOXA2.p3	-0.475	FOXA2
POU6F1.p2	-0.481	POU6F1
CDC5L.p2	-0.509	CDC5L
ZNF238.p2	-0.524	ZNF238
GUAAACA	-0.539
HOXA9_MEIS1.p2	-0.541	MEIS1 HOXA9
GUCAGUU	-0.559
EOMES.p2	-0.592	EOMES
HBP1_HMGB_SSRP1_UBTF.p2	-0.592	HMGB2 HMGB3 SSRP1 UBTF HBP1
ACCCUGU	-0.641
UGUGCUU	-0.643
CREB1.p2	-0.659	CREB1
UGCAUUG	-0.659
ADNP_IRX_SIX_ZHX.p2	-0.707	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
TCF4_dimer.p2	-0.709	TCF4
ATF6.p2	-0.731	ATF6
RXR{A,B,G}.p2	-0.751	RXRA RXRB RXRG
FOXP3.p2	-0.766	FOXP3
FOSL2.p2	-0.774	FOSL2
CGUACCG	-0.793
GGCAGUG	-0.797
TAL1_TCF{3,4,12}.p2	-0.840	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
CGUGUCU	-0.856
GAGAACU	-0.879
NHLH1,2.p2	-0.882	NHLH1 NHLH2
AGCAGCA	-0.911
AGUGCAA	-0.941
ATF2.p2	-0.944	ATF2
HMX1.p2	-0.998	HMX1
FOX{F1,F2,J1}.p2	-1.007	FOXF2 FOXJ1 FOXF1
FEV.p2	-1.080	FEV
SOX5.p2	-1.121	SOX5
NFIX.p2	-1.153	NFIX
GGAAGAC	-1.153
CCCUGAG	-1.165
AAGUGCU	-1.195
UGCAUAG	-1.197
CEBPA,B_DDIT3.p2	-1.322	DDIT3 CEBPA CEBPB
IRF1,2,7.p3	-1.329	IRF1 IRF2 IRF7
TLX2.p2	-1.330	TLX2
ACAUUCA	-1.332
RORA.p2	-1.369	RORA
ALX1.p2	-1.394	ALX1
PAX2.p2	-1.409	PAX2
UCCCUUU	-1.409
HSF1,2.p2	-1.414	HSF1 HSF2
STAT2,4,6.p2	-1.418	STAT2 STAT4 STAT6
AGCUGCC	-1.431
HLF.p2	-1.503	HLF
ZBTB6.p2	-1.518	ZBTB6
NANOG{mouse}.p2	-1.604	NANOG
AR.p2	-1.626	AR
ZEB1.p2	-1.632	ZEB1
AAAGUGC	-1.646
UUGUUCG	-1.683
FOX{C1,C2}.p2	-1.687	FOXC1 FOXC2
RREB1.p2	-1.722	RREB1
NKX2-3_NKX2-5.p2	-1.730	NKX2-5 NKX2-3
NKX2-1,4.p2	-1.748	NKX2-1 NKX2-4
PAX4.p2	-1.770	PAX4
POU5F1_SOX2{dimer}.p2	-1.819	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
HIC1.p2	-1.822	HIC1
AIRE.p2	-1.832	AIRE
AUUGCAC	-1.834
HNF4A_NR2F1,2.p2	-1.907	NR2F1 NR2F2 HNF4A
PPARG.p2	-1.924	PPARG
PITX1..3.p2	-1.927	PITX2 PITX3 PITX1
GATA1..3.p2	-1.929	GATA1 GATA2 GATA3
NR1H4.p2	-1.932	NR1H4
MEF2{A,B,C,D}.p2	-1.932	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
POU1F1.p2	-2.034	POU1F1
FOX{D1,D2}.p2	-2.042	FOXD2 FOXD1
TLX1..3_NFIC{dimer}.p2	-2.092	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
TEAD1.p2	-2.101	TEAD1 TEAD2 TEAD3 TEAD4
RXRA_VDR{dimer}.p2	-2.148	VDR	$logo of RXRA_VDR{dimer}.p2$
FOXL1.p2	-2.231	FOXL1
TFAP2{A,C}.p2	-2.244	TFAP2C TFAP2A
UUUUUGC	-2.277
GTF2A1,2.p2	-2.334	GTF2A1 GTF2A2
GAGAUGA	-2.371
HOX{A5,B5}.p2	-2.385	HOXB5 HOXA5
JUN.p2	-2.412	JUN JUND JUNB
ZFP161.p2	-2.448	ZFP161
MTF1.p2	-2.504	MTF1
MAZ.p2	-2.568	MAZ
STAT1,3.p3	-2.589	STAT1 STAT3
RUNX1..3.p2	-2.613	RUNX1 RUNX3 RUNX2
HNF1A.p2	-2.641	HNF1A
CDX1,2,4.p2	-2.678	CDX1 CDX2 CDX4
LMO2.p2	-2.682	LMO2
RFX1..5_RFXANK_RFXAP.p2	-2.741	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
MZF1.p2	-2.784	MZF1
REST.p3	-2.801	REST
GTF2I.p2	-2.850	GTF2I
GATA6.p2	-2.872	GATA6
CAGCAGG	-2.933
GGCUCAG	-2.970
EN1,2.p2	-2.970	EN1 EN2
GLI1..3.p2	-3.024	GLI1 GLI2 GLI3
ETS1,2.p2	-3.025	ETS2 ETS1
EBF1.p2	-3.037	EBF1
MYOD1.p2	-3.084	MYOD1
EVI1.p2	-3.181	EVI1
EGR1..3.p2	-3.327	EGR3 EGR1 EGR2
NFKB1_REL_RELA.p2	-3.450	RELA REL NFKB1
HAND1,2.p2	-3.475	HAND1 HAND2
TGIF1.p2	-3.507	TGIF1
CACAGUG	-3.509
KLF12.p2	-3.577	KLF12
POU5F1.p2	-3.601	POU5F1
MYFfamily.p2	-3.776	MYOD1 MYF6 MYF5 MYOG
POU2F1..3.p2	-3.819	POU2F2 POU2F1 POU2F3
TBX4,5.p2	-3.871	TBX5 TBX4
SMAD1..7,9.p2	-5.043	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
TFCP2.p2	-5.211	TFCP2
SNAI1..3.p2	-5.598	SNAI2 SNAI1 SNAI3
TBP.p2	-5.942	TBP
CUCCCAA	-5.961

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Sample name: NCI60_1_MDA-MB-435

Sorted z-values for every WM.