ISMARA results: NCI60_1

Sample name: NCI60_1_SK-MEL-28

Sorted Z-values histogram for the sample NCI60_1_SK-MEL-28

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
ELK1,4_GABP{A,B1}.p3	8.326	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
NRF1.p2	7.484	NRF1
ZNF143.p2	6.637	ZNF143
NFY{A,B,C}.p2	6.106	NFYC NFYB NFYA
XBP1.p3	5.383	XBP1
YY1.p2	5.036	YY1
E2F1..5.p2	4.736	E2F4 E2F5 E2F2 E2F1 E2F3
HIF1A.p2	4.733	HIF1A
MYB.p2	3.937	MYB
ELF1,2,4.p2	3.744	ELF2 ELF1 ELF4
EHF.p2	3.653	EHF
PAX5.p2	3.512	PAX5
TFDP1.p2	3.475	TFDP1
AAGGCAC	3.375
KLF4.p3	3.260	KLF4
bHLH_family.p2	3.097	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
ATF5_CREB3.p2	3.050	ATF5 CREB3
ATF4.p2	2.936	ATF4
GGAAUGU	2.814
SP1.p2	2.446	SP1
ESRRA.p2	2.406	ESRRA
UUGGCAA	2.344
BACH2.p2	2.277	BACH2
FOXN1.p2	2.201	FOXN1
BPTF.p2	2.160	BPTF
UCAAGUA	2.158
TFEB.p2	2.105	TFEB
NKX2-2,8.p2	2.100	NKX2-2 NKX2-8
CUUUGGU	2.063
NFATC1..3.p2	2.054	NFATC3 NFATC2 NFATC1
PBX1.p2	2.048	PBX1
GUGCAAA	2.022
HOX{A6,A7,B6,B7}.p2	1.879	HOXB6 HOXA7 HOXB7 HOXA6
HMGA1,2.p2	1.822	HMGA1 HMGA2
MAFB.p2	1.731	MAFB
GFI1.p2	1.673	GFI1
UCACAUU	1.655
SPZ1.p2	1.623	SPZ1
FOXD3.p2	1.596	FOXD3
AHR_ARNT_ARNT2.p2	1.592	ARNT AHR ARNT2
SREBF1,2.p2	1.470	SREBF1 SREBF2
ACAGUAU	1.465
EWSR1-FLI1.p2	1.407	FLI1 EWSR1
AACACUG	1.345
NFE2.p2	1.301	NFE2
TFAP4.p2	1.295	TFAP4
ONECUT1,2.p2	1.286	ONECUT2 ONECUT1
TP53.p2	1.282	TP53
AGUGGUU	1.226
HOX{A4,D4}.p2	1.186	HOXA4 HOXD4
GUAGUGU	1.173
ACAGUAC	1.140
GGCAAGA	1.028
UCCAGUU	1.017
GUAACAG	1.004
ARID5B.p2	0.990	ARID5B
MSX1,2.p2	0.956	MSX1 MSX2
ESR1.p2	0.939	ESR1
CTCF.p2	0.910	CTCF
RXRG_dimer.p3	0.893	NR1H2 RXRA PPARG PPARA RXRB RXRG
AUGGCAC	0.889
NKX6-1,2.p2	0.868	NKX6-1 NKX6-2
NFE2L2.p2	0.816	NFE2L2
GAGGUAG	0.813
NKX3-2.p2	0.806	NKX3-2
CREB1.p2	0.779	CREB1
TFAP2B.p2	0.771	TFAP2B
UAAGACG	0.713
PRRX1,2.p2	0.673	PRRX2 PRRX1
NANOG.p2	0.644	NANOG
SOX17.p2	0.609	SOX17
AAUGCCC	0.572
EP300.p2	0.571	EP300
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	0.571	ARNT MAX MYC USF1 BHLHB2 ARNT2
HES1.p2	0.555	HES1
GGAGUGU	0.549
SOX{8,9,10}.p2	0.534	SOX9 SOX8 SOX10
T.p2	0.531	T
NKX3-1.p2	0.496	NKX3-1
CCUUCAU	0.479
SRY.p2	0.470	SRY
ACUGGCC	0.466
IKZF2.p2	0.441	IKZF2
FOSL2.p2	0.383	FOSL2
FOXO1,3,4.p2	0.383	FOXO1 FOXO4 FOXO3
AUGUGCC	0.377
AACAGUC	0.372
CRX.p2	0.359	CRX
SPI1.p2	0.358	SPI1
LHX3,4.p2	0.348	LHX3 LHX4
AACCUGG	0.341
AUGGCUU	0.324
AACCGUU	0.303
AAAGUGC	0.284
CCAGUGU	0.247
NFE2L1.p2	0.242	NFE2L1
AUUGCAC	0.220
AAUCUCA	0.213
ACUGCAU	0.174
GCAGCAU	0.156
HMX1.p2	0.134	HMX1
PAX6.p2	0.126	PAX6
UCACAGU	0.123
ZNF238.p2	0.117	ZNF238
ACCCGUA	0.098
SOX2.p2	0.080	SOX2
SRF.p3	0.063	SRF
ACAUUCA	0.005
UUGUUCG	-0.002
GAUAUGU	-0.008
FOXQ1.p2	-0.017	FOXQ1
UGACCUA	-0.043
CAGUGCA	-0.046
GZF1.p2	-0.076	GZF1
GAUCAGA	-0.086
CUACAGU	-0.092
AAUCUCU	-0.100
ATF2.p2	-0.101	ATF2
GCUACAU	-0.107
HOXA9_MEIS1.p2	-0.109	MEIS1 HOXA9
AGCAGCG	-0.114
FOXA2.p3	-0.120	FOXA2
PAX3,7.p2	-0.131	PAX7 PAX3
CEBPA,B_DDIT3.p2	-0.165	DDIT3 CEBPA CEBPB
ZBTB16.p2	-0.175	ZBTB16
PRDM1.p3	-0.185	PRDM1
GCUGGUG	-0.197
GUCAGUU	-0.199
AAGUGCU	-0.205
UGCAUUG	-0.233
FOX{I1,J2}.p2	-0.256	FOXI1 FOXJ2
GGAAGAC	-0.257
AUGACAC	-0.257
PDX1.p2	-0.264	PDX1
AGGUAGU	-0.274
UGUGCGU	-0.289
GFI1B.p2	-0.303	GFI1B
MYBL2.p2	-0.321	MYBL2
AGUGCAA	-0.329
PAX8.p2	-0.335	PAX8
VSX1,2.p2	-0.336	VSX2 VSX1
UGAAAUG	-0.349
AACGGAA	-0.392
IKZF1.p2	-0.430	IKZF1
CGUGUCU	-0.439
IRF1,2,7.p3	-0.444	IRF1 IRF2 IRF7
FOS_FOS{B,L1}_JUN{B,D}.p2	-0.453	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
AAGGUGC	-0.455
ZNF148.p2	-0.463	ZNF148
PAX2.p2	-0.471	PAX2
NR6A1.p2	-0.490	NR6A1
ATF6.p2	-0.521	ATF6
GAUUGUC	-0.532
TFAP2{A,C}.p2	-0.542	TFAP2C TFAP2A
ZFP161.p2	-0.554	ZFP161
AGCUUAU	-0.578
AGCAGCA	-0.589
ZBTB6.p2	-0.598	ZBTB6
STAT5{A,B}.p2	-0.603	STAT5B STAT5A
ZNF384.p2	-0.608	ZNF384
CGUACCG	-0.626
UAAGACU	-0.636
GAGAACU	-0.646
NR5A1,2.p2	-0.651	NR5A1 NR5A2
RBPJ.p2	-0.662	RBPJ
HIC1.p2	-0.666	HIC1
DMAP1_NCOR{1,2}_SMARC.p2	-0.667	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
UUGGUCC	-0.684
ADNP_IRX_SIX_ZHX.p2	-0.686	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
GGACGGA	-0.693
CDX1,2,4.p2	-0.695	CDX1 CDX2 CDX4
POU3F1..4.p2	-0.695	POU3F1 POU3F3 POU3F2 POU3F4
EOMES.p2	-0.696	EOMES
UAAUGCU	-0.733
GUAAACA	-0.739
SOX5.p2	-0.744	SOX5
NR3C1.p2	-0.763	NR3C1
FOXL1.p2	-0.817	FOXL1
TAL1_TCF{3,4,12}.p2	-0.830	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
EGR1..3.p2	-0.899	EGR3 EGR1 EGR2
ZNF423.p2	-0.912	ZNF423
UUGGCAC	-0.931
CCAGCAU	-0.938
CAGCAGG	-0.943
NHLH1,2.p2	-0.957	NHLH1 NHLH2
NKX2-3_NKX2-5.p2	-0.963	NKX2-5 NKX2-3
TCF4_dimer.p2	-0.999	TCF4
ZEB1.p2	-1.006	ZEB1
FOXP3.p2	-1.030	FOXP3
DBP.p2	-1.064	DBP
AAUACUG	-1.083
UAUUGCU	-1.090
POU5F1_SOX2{dimer}.p2	-1.110	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
HBP1_HMGB_SSRP1_UBTF.p2	-1.119	HMGB2 HMGB3 SSRP1 UBTF HBP1
HOX{A5,B5}.p2	-1.120	HOXB5 HOXA5
CUX2.p2	-1.157	CUX2
GGCAGUG	-1.242
GATA1..3.p2	-1.248	GATA1 GATA2 GATA3
RORA.p2	-1.256	RORA
NR1H4.p2	-1.267	NR1H4
POU6F1.p2	-1.275	POU6F1
TLX1..3_NFIC{dimer}.p2	-1.277	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
TEAD1.p2	-1.344	TEAD1 TEAD2 TEAD3 TEAD4
RXR{A,B,G}.p2	-1.374	RXRA RXRB RXRG
NFIX.p2	-1.375	NFIX
SPIB.p2	-1.383	SPIB
EBF1.p2	-1.387	EBF1
MAZ.p2	-1.419	MAZ
NKX2-1,4.p2	-1.422	NKX2-1 NKX2-4
NR4A2.p2	-1.497	NR4A2
STAT1,3.p3	-1.530	STAT1 STAT3
LEF1_TCF7_TCF7L1,2.p2	-1.550	TCF7 TCF7L2 LEF1 TCF7L1
ZIC1..3.p2	-1.571	ZIC1 ZIC2 ZIC3
UGCAUAG	-1.591
HSF1,2.p2	-1.593	HSF1 HSF2
HNF4A_NR2F1,2.p2	-1.621	NR2F1 NR2F2 HNF4A
CCCUGAG	-1.626
PAX4.p2	-1.635	PAX4
ACCCUGU	-1.653
TLX2.p2	-1.678	TLX2
PATZ1.p2	-1.702	PATZ1
STAT2,4,6.p2	-1.731	STAT2 STAT4 STAT6
FOX{F1,F2,J1}.p2	-1.754	FOXF2 FOXJ1 FOXF1
NFIL3.p2	-1.821	NFIL3
PITX1..3.p2	-1.857	PITX2 PITX3 PITX1
AIRE.p2	-1.874	AIRE
FOX{C1,C2}.p2	-1.886	FOXC1 FOXC2
RXRA_VDR{dimer}.p2	-1.887	VDR	$logo of RXRA_VDR{dimer}.p2$
FOX{D1,D2}.p2	-1.896	FOXD2 FOXD1
AR.p2	-1.932	AR
RFX1..5_RFXANK_RFXAP.p2	-1.956	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
ETS1,2.p2	-1.984	ETS2 ETS1
UGUGCUU	-1.990
HLF.p2	-2.006	HLF
LMO2.p2	-2.038	LMO2
MZF1.p2	-2.077	MZF1
GTF2A1,2.p2	-2.121	GTF2A1 GTF2A2
NANOG{mouse}.p2	-2.127	NANOG
AGCUGCC	-2.147
REST.p3	-2.155	REST
PPARG.p2	-2.175	PPARG
CDC5L.p2	-2.245	CDC5L
RUNX1..3.p2	-2.407	RUNX1 RUNX3 RUNX2
MYFfamily.p2	-2.440	MYOD1 MYF6 MYF5 MYOG
JUN.p2	-2.474	JUN JUND JUNB
ALX1.p2	-2.527	ALX1
FEV.p2	-2.625	FEV
AGCACCA	-2.627
EN1,2.p2	-2.683	EN1 EN2
POU2F1..3.p2	-2.691	POU2F2 POU2F1 POU2F3
POU1F1.p2	-2.763	POU1F1
HNF1A.p2	-2.776	HNF1A
TGIF1.p2	-2.824	TGIF1
UCCCUUU	-2.861
GAGAUGA	-2.909
UUUUUGC	-2.936
RREB1.p2	-2.953	RREB1
GATA6.p2	-3.079	GATA6
CACAGUG	-3.183
MEF2{A,B,C,D}.p2	-3.301	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
MYOD1.p2	-3.524	MYOD1
GGCUCAG	-3.613
EVI1.p2	-3.628	EVI1
GLI1..3.p2	-3.917	GLI1 GLI2 GLI3
MTF1.p2	-3.923	MTF1
POU5F1.p2	-3.948	POU5F1
HAND1,2.p2	-4.037	HAND1 HAND2
NFKB1_REL_RELA.p2	-4.190	RELA REL NFKB1
SMAD1..7,9.p2	-4.292	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
TBX4,5.p2	-4.469	TBX5 TBX4
KLF12.p2	-4.474	KLF12
TFCP2.p2	-4.512	TFCP2
GTF2I.p2	-5.011	GTF2I
SNAI1..3.p2	-5.381	SNAI2 SNAI1 SNAI3
TBP.p2	-6.344	TBP
CUCCCAA	-6.494

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Sample name: NCI60_1_SK-MEL-28

Sorted z-values for every WM.